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Displaying 50 of 130 results for "TSC22D3"
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  1. Transcriptome of a mouse kidney cortical collecting duct cell line: effects of aldosterone and vasopressin ArrayExpress

    ID: E-GEOD-678

    Description: mpkCCD(cl4)) and the changes in the transcriptome induced by aldosterone and vasopressin. Serial analysis of gene expression (SAGE) was performed on untreated cells and on cells treated with either aldosterone or vasopressin for 4 h. The transcriptomes in these three experimental conditions...

  2. Transcriptome of a mouse kidney cortical collecting duct cell line: effects of aldosterone and vasopressin BioProject

    ID: PRJNA87623

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: mpkCCD(cl4)) and the changes in the transcriptome induced by aldosterone and vasopressin. Serial analysis of gene expression (SAGE) was performed on untreated cells and on cells treated with either aldosterone or vasopressin for 4 h. The transcriptomes in these three experimental conditions...
  3. DIP-chip: Rapid and accurate determination of DNA-binding specificity BioProject

    ID: PRJNA97819

    Keywords: Epigenomics

    Access Type: download

  4. Escherichia coli : DIP-seq raw sequence reads BioProject

    ID: PRJNA303192

    Keywords: raw sequence reads

    Access Type: download

  5. DIP-seq analysis of 5mC and 5hmC distributions in hESCs and day 12 neural cells BioProject

    ID: PRJNA282456

    Keywords: Epigenomics

    Access Type: download

  6. Crystal Structure of the complex of Dpr6 Domain 1 bound to DIP-alpha Domain 1+2 PDB

    ID: PDB:5EO9

    Description: Dpr6, isoform C, CG32791, isoform A

  7. DIP Using Image Encryption and XOR Operation Affine Transform Figshare

    ID: doi:10.6084/M9.FIGSHARE.1385151.V1

    Release Date: 01-19-2016

    Description:

  8. Cost effectiveness of the NZ DIP guideline screening recommendations FINAL Dryad

    DateIssued: 05-18-2015

    Description: compare the cost effectiveness of the 2-step and 3-step screening strategies described in the article....

  9. Crystal Structure Analysis of the Bb segment of Factor B complexed with Di-isopropyl-phosphate (DIP) PDB

    ID: PDB:1RS0

    Description: Complement factor B (E.C.3.4.21.47)

  10. DIP Using Image Encryption and XOR Operation Affine Transform Figshare

    ID: doi:10.6084/M9.FIGSHARE.1385151

    Release Date: 07-31-2015

    Description:

  11. DIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5 ArrayExpress

    ID: E-GEOD-13751

    Description: DNA Immunoprecipitation was performed using purified, naked, genomic DNA and purified recombinant DNA binding domains for S. cerevisiae transcription ...

  12. DIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5 BioProject

    ID: PRJNA109407

    Keywords: Epigenomics

    Access Type: download

  13. Conformation of DIP-AST5 from 2D NMR data PDB

    ID: PDB:2JQS

    Description: Allatostatins

  14. Conformation of DIP-AST8 from 2D NMR data PDB

    ID: PDB:2JQU

    Description: Allatostatins

  15. Transcriptome of a mouse kidney cortical collecting duct cell line: effects of aldosterone and vasopressin OmicsDI

    ID: E-GEOD-678

    Date Released: 03-27-2012

    Description: mpkCCD(cl4)) and the changes in the transcriptome induced by aldosterone and vasopressin. Serial analysis of gene expression (SAGE) was performed on untreated cells and on cells treated with either aldosterone or vasopressin for 4 h. The transcriptomes in these three experimental conditions...

  16. Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data) ArrayExpress

    ID: E-GEOD-24841

    Description: We analyzed the genome-wide binding of Tet1 in control (shScr) and Tet1 knockdown (shTet1) mouse ES cells using two different Tet1 antibodies (Tet1-C ...

  17. Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data) BioProject

    ID: PRJNA133431

    Keywords: Epigenomics

    Access Type: download

  18. Me-DIP-chip data from osteosarcoma tumours BioProject

    ID: PRJNA114171

    Keywords: Epigenomics

    Access Type: download

  19. Translational control in early adipogenesis ArrayExpress

    ID: E-GEOD-29744

    Description: l27a, Rpl6, Rpl7a, Rps18, Rpsa, Sema3g, Tbc1d22a, Tsc22d3), form part of ribosomes (L6, L7a, L18, L27a, Sa, S18, S15a pseudogene), act on the regulation of translation (eIF4b) or transcription (Hsf1, Irf6, Myc, Tsc22d3). Others act as chaperones (Bag3, Hspa8/Hsc70, Hsp90ab1) or in other metabolic or signals transducing processes. We conclude that a moderate reorganisation of the functionality of the ribosomal machinery is a very important step for the growth and expression control at the beginning of adipogenesis. 12 samples: 4 (0h, non-polysomal fraction; 0h, polysomal fraction; 6h, non-polysomal fraction; 6h, polysomal fraction) x3 replicates...

  20. Me-DIP-chip data from osteosarcoma cell lines BioProject

    ID: PRJNA109227

    Keywords: Epigenomics

    Access Type: download

  21. Translational control in early adipogenesis OmicsDI

    ID: E-GEOD-29744

    Date Released: 06-26-2012

    Description: l27a, Rpl6, Rpl7a, Rps18, Rpsa, Sema3g, Tbc1d22a, Tsc22d3), form part of ribosomes (L6, L7a, L18, L27a, Sa, S18, S15a pseudogene), act on the regulation of translation (eIF4b) or transcription (Hsf1, Irf6, Myc, Tsc22d3). Others act as chaperones (Bag3, Hspa8/Hsc70, Hsp90ab1) or in other metabolic or signals transducing processes. We conclude that a moderate reorganisation of the functionality of the ribosomal machinery is a very important step for the growth and expression control at the beginning of adipogenesis. 12 samples: 4 (0h, non-polysomal fraction; 0h, polysomal fraction; 6h, non-polysomal fraction; 6h, polysomal fraction) x3 replicates...

  22. MSL2 reads DNA shape to distinguish X from autosome for dosage compensation (DIP experiments) BioProject

    ID: PRJNA302264

    Keywords: Epigenomics

    Access Type: download

  23. Methyl DIP-chip from self-pollinated ddm1 mutant and ddm1 kyp double mutant ArrayExpress

    ID: E-GEOD-34222

    Description: ent DNA methylase gene CHROMOMETHYALSE3, the ddm1-induced de novo cytosine methylation was abolished for all three contexts, CpG, CpHpG, and CpHpH. Furthermore, RNAi mutants showed strong developmental defects when combined with ddm1 mutation. Our results revealed unexpected interactions of epigenetic modifications, which could be conserved among diverse eukaryotes. comparison of DNA methylation between WT, 2G ddm1 (2 replications), 8G ddm1 (2 replications), and 8G ddm1 kyp...

  24. T22D3_PONAB UniProt:Swiss-Prot

    ID: Q5RED5

    Description: TSC22 domain family protein 3 AP1-binding Leucine-

  25. Role of Serine 134 phosphorylation of the glucocorticoid receptor (GR) in glucocorticoid signaling ArrayExpress

    ID: E-GEOD-28912

    Description: come directly activated. Here we report the human glucocorticoid receptor (GR) Serine 134 as a novel target for p38 MAPK. Unlike most other phosphorylation events that occur on the GR, phosphorylation of Ser134 was found to be hormone-independent in several human and rat c...

  26. actions of glucocorticoids by phosphorylating the glucocorticoid receptor through p38 mitogen-activated protein kinase... ArrayExpress

    ID: E-GEOD-22647

    Description: eral supplies. We showed here that AMPK regulates glucocorticoid actions on carbohydrate metabolism by targeting the glucocorticoid receptor (GR) and modifying transcription of glucocorticoid-responsive genes in a tissue- and promoter-specific fashion. Activation of AMPK in rats reversed glucocorticoid-induced hepatic steatosis and suppressed gluc

  27. Translational control in early adipogenesis BioProject

    ID: PRJNA141175

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: l27a, Rpl6, Rpl7a, Rps18, Rpsa, Sema3g, Tbc1d22a, Tsc22d3), form part of ribosomes (L6, L7a, L18, L27a, Sa, S18, S15a pseudogene), act on the regulation of translation (eIF4b) or transcription (Hsf1, Irf6, Myc, Tsc22d3). Others act as chaperones (Bag3, Hspa8/Hsc70, Hsp90ab1) or in other metabolic or signals transducing processes. We conclude that a moderate reorganisation of the functionality of the ribosomal machinery is a very important step for the growth and expression control at the beginning of adipogenesis. Overall design: 12 samples: 4 (0h, non-polysomal fraction; 0h, polysomal fraction; 6h, non-polysomal fraction; 6h, polysomal fraction) x3 replicates...
  28. Methyl DIP-chip from self-pollinated ddm1 mutant and ddm1 kyp double mutant BioProject

    ID: PRJNA149817

    Keywords: Epigenomics

    Access Type: download

  29. Transcription profiling by array of diploid, triplod and tetraploid Arabidopsis plants ArrayExpress

    ID: E-GEOD-6828

    Description: evelopmental stage1.02, 2 leaves). Sample names:; DIP diploid; TET tetraploid; TFE triploid female excess; TME triplod male excess; Experimenter name: Olivier Garnier; Experimenter phone: 00-353-21-490-4028; Experimenter address: Plant molecular genetics lab, Dpt of Biochemistry, UCC; Experimenter address: Lee Maltings Prospect row; Experimenter zip/postal_code: Cork; Experimenter country: Ireland Experiment Overall Design: 11 samples were used in this experiment...

  30. Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells (ChIP-Seq) ArrayExpress

    ID: E-GEOD-43949

    Description: the differentiation of Th17 cells. DNA binding of TSC22D3 in Th17 cells compared to WCE...

  31. marine metagenome : Marine photic zone, New Caledonia Lagoon raw sequence reads, nitrogenase amplicons BioProject

    ID: PRJNA300416

    Keywords: raw sequence reads

    Access Type: download

    dataset.description: fertilization with dissolved inorganic phosphate (DIP) over a 23-day period, using both polymerase chain reaction (PCR) amplification of nitrogenase genes (nifH) and quantitative PCR (qPCR) assays targeting known marine diazotroph lineages....
  32. Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis (MeDIP-seq) ArrayExpress

    ID: E-GEOD-59579

    Description: ing enhancers from aberrant DNA methylation. 5hmC-DIP-seq analysis for distribution of 5hmC in in vitro-grown hematopoietic cells transduced with AML1-ETO...

  33. Genome-wide analysis of expression and DNA methylation at CpG-island-associated sense-antisense transcript loci in mouse ArrayExpress

    ID: E-GEOD-14392

    Description: .5 and 13.5 days postcoitum (dpc)]) were used for DIP chip experiments. Nine of twelve tissues were separately analyzed classified on the basis of sex. A technical duplication of DIP chip analysis was performed by using the same genomic DNA of male kidney....

  34. Tumor hypoxia causes DNA hypermethylation by reducing TET activity (DIP-Seq) BioProject

    ID: PRJNA291094

    Keywords: Epigenomics

    Access Type: download

  35. actions of glucocorticoids by phosphorylating the glucocorticoid receptor through p38 mitogen-activated protein kinase.... BioProject

    ID: PRJNA128033

    Keywords: Transcriptome or Gene expression

    Access Type: download

  36. Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells (ChIP-Seq) BioProject

    ID: PRJNA188244

    Keywords: Epigenomics

    Access Type: download

    dataset.description: ion of Th17 cells. Overall design: DNA binding of TSC22D3 in Th17 cells compared to WCE...
  37. Novel targets for the transcription factors MEF2 in MA-10 Leydig cells ArrayExpress

    ID: E-GEOD-64128

    Description: e Pde8a, Por, Ahr, Bmal1, Cyp1a1, Cyp1b1, Map2k1, Tsc22d3, Nr0b2, Smad4, and Star, which were all downregulated in the absence of MEF2. In silico analyses revealed the presence of MEF2 binding sites within the first 2 kb upstream the transcription start site of the Por, Bmal1, and Nr0b2 promoters, which suggests a direct regulation by MEF2. Using transient transfections in MA-10 Leydig cells, siRNA knockdown, and a MEF2-Engrailed dominant negative, we found that MEF2 activates the Por, Bmal1 and Nr0b2 promoters and that this requires an intact MEF2 element. Our results identify novel target genes for MEF2 and define MEF2 as an important regulator of Leydig cell function and male reproduction. MA-10 Leydig cells were treated with siRNA MEF2A/2D (siRNA MEF2) or scrambled siRNA as control (siRNA Ctrl) 48h before total RNA extraction....

  38. Role of Serine 134 phosphorylation of the glucocorticoid receptor (GR) in glucocorticoid signaling BioProject

    ID: PRJNA140563

    Keywords: Transcriptome or Gene expression

    Access Type: download

  39. individual dip sampling data for mosquito larvae in Ethiopia Dryad

    DateIssued: 05-05-2016

    Description: epth: depth in cm at the point of each individual dip sample. Area: area of the water body being sampled. Mean_depth: mean of depth measures from site. ph: ph at each site. Tall_rip: percentage estimate of tall (>20cm) riparian vegetation around the water body. Temp: temperature in degrees celsius at the s...

  40. Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics ArrayExpress

    ID: E-GEOD-56429

    Description: in various human pathologies. In mammals, the TET family of dioxygenases can oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) in a stepwise manner. 5fC and 5caC are selectively recognized and excised by mammalian thymine DNA glycosylase (TDG), and ...

  41. Genome-wide analysis reveals TET- and TDG-mediated 5-methylcytosine oxidation dynamics [MeDIP-Seq] ArrayExpress

    ID: E-GEOD-46111

    Description: Ten-eleven translocation (Tet) family of DNA dioxygenases converts 5-methylcytosine (5mC) into 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5- carb...

  42. Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells (ChIP-Seq) OmicsDI

    ID: E-GEOD-43949

    Date Released: 05-04-2014

    Description: the differentiation of Th17 cells. DNA binding of TSC22D3 in Th17 cells compared to WCE...

  43. Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics BioProject

    ID: PRJNA243290

    Keywords: Epigenomics

    Access Type: download

    dataset.description: in various human pathologies. In mammals, the TET family of dioxygenases can oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) in a stepwise manner. 5fC and 5caC are selectively recognized and excised by mammalian thymine DNA glycosylase (TDG), and ...
  44. A library of yeast transcription factor motifs ArrayExpress

    ID: E-GEOD-12349

    Description: s Protein binding microarray (PBM), ChIP-chip and DIP-chip experiments of yeast transcription factor DNA-binding domains were performed. Briefly, the PBMs involved binding GST-tagged DNA-binding proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006. A key feature is that the microarrays are composed of de Bruijn sequences that contain each 10-base sequence once and only once, providing an evenly balanced sequence distribution. Individual de Bruijn sequences have different properties, including representation of gapped patterns. Here we provide the data transformed into median intensities for all 32,896 8-base sequences, Z-scores for these intensities, and E-scores. E-scores are a modified version of AUC, and describe how well each 8-mer ranks the intensities of the spots. In general the E-scores are slightly more reproducible than Z-scores, but contain less information about relative binding affinity. Additional experimental details are found in Berger et al., Nature Biotechnology 2006, Berger et al., Cell 2008, and the accompanying Supplementary information. Raw 35-mer array data is available on the web link provided...

  45. interphalangeal (PIP) and distal interphalangeal (DIP) joints for the shod (n=4) and unshod (n=4) conditions about the flexion-extension axis... PeerJ

    ID: doi:10.7287/PEERJ.PREPRINTS.1779/SUPP-4

    Release Date: 02-23-2016

    Creators: Panagiotopoulou, Olga

  46. Epigenetic and transcriptional landscapes of Dnmt3a-deficient olfactory sensory neurons ArrayExpress

    ID: E-GEOD-52464

    Description: SN-expressed genes, and the alteration of odorant-induced transcriptional responses of immediate early genes. Together, these results demonstrate that Dnmt3a is necessary to define the neuronal transcriptional state and may be broadly involved in refining expression profiles within differentiated cells. To determine the contributions of Dnmt3a to the DNA modification and transcriptional landscapes of a post-mitotic neuronal population, we performed DNA immunoprecipitation (DIP-seq) using antibodies specific for 5mC and 5hmC and rRNA-depleted transcriptional profiling (RNA-seq) coupled to high-throughput sequencing using genomic DNA or RNA from FACS-isolated mature olfactory sensory neurons (mOSNs) from main olfactory epithelium (MOE) of Dnmt3a wildtype (WT), heterozygous-null (Het), or homozygous-null (KO) 3-week old mice. Similarly, to compare this information with other epigenetic features of the MOE, we performed H3K4me1 (WT), H3K27ac (WT), and H3K27me3 (WT and K...

  47. Complementary Expression of Immunoglobulin Superfamily Ligands and Receptors in Synaptic Pairs in the Drosophila Visual System ArrayExpress

    ID: E-GEOD-68235

    Description: gging, we demonstrate that 21 paralogs of the Dpr family, a subclass of Immunoglobulin (Ig)-domain containing proteins, are expressed in unique combinations in homologous neurons with different layer-specific synaptic connections. Dpr interacting proteins (DIPs), comprising nine paralogs of another subclass of Ig superfamily proteins, are expressed in a complementary layer-specific fashion in a subset of synaptic partners. We propose that pairs of Dpr/DIP paralogs contribute to layer-specific patterns of synaptic connectivity. Conclusions: This complexity is mirrored by the complexity of the cell surface and secreted molecules expressed by each of the R cell and lamina neurons profiled in this study. How this complexity contributes to specificity remains elusive, but the ...

  48. interphalangeal (PIP) and distal interphalangeal (DIP) joints for the shod (n=4) and unshod (n=4) conditions about the flexion-extension axis... PeerJ

    ID: doi:10.7287/PEERJ.PREPRINTS.1779V1/SUPP-4

    Release Date: 02-23-2016

    Creators: Panagiotopoulou, Olga

  49. Transcriptome response to change in ploidy level in Arabidopsis BioProject

    ID: PRJNA99151

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: developmental stage1.02, 2 leaves). Sample names: DIP diploid TET tetraploid TFE triploid female excess TME triplod male excess Experimenter name: Olivier Garnier Experimenter phone: 00-353-21-490-4028 Experimenter address: Plant molecular genetics lab, Dpt of Biochemistry, UCC Experimenter address: Lee Maltings Prospect row Experimenter zip/postal_code: Cork Experimenter country: Ireland Keywords: strain_or_line_design Overall design: 11 samples were used in this experiment...
  50. Structural elucidation of a novel mechanism for bacteriophage-based inhibition of the RNA degradosome OmicsDI

    ID: PXD003285

    Date Released: 01-01-1000

    Description: ected cell. Encoded by the giant phage фKZ, KZ37/Dip associates with two RNA binding sites of the RNase E component of the Pseudomonas aeruginosa RNA degradosome. Thereby, KZ37/Dip competes with the binding of RNA substrates, resulting in effective inhibition of RNA degradation. The crystal structure of KZ37/Dip (2.2 Å) reveals an unprecedented fold for which there are no identified structural homologues. The protein forms a homo-dimer th...


Displaying 50 of 130 results for "TSC22D3"