TGFBRAP1 | bioCADDIE Data Discovery Index
Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Displaying 20 of 1,039 results for "TGFBRAP1"
i
  1. DCTM_VIBCH UniProt:Swiss-Prot

    ID: Q9KQS1

    Description: C4-dicarboxylate TRAP transporter large permease protein DctM Helical Helical Helical Helical Helical Helical Helical Helical Hel...

  2. Integrative Transcriptome Analysis Reveals Common Molecular Subtypes of Human Hepatocellular Carcinoma BioProject

    ID: PRJNA108343

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ion as well as MYC and AKT activation, and S3 was associated with hepatocyte differentiation. Functional studies indicated that the WNT pathway activation signature characteristic of S1 tumors was not simply the result of beta-catenin mutation but rather was the result of transforming growth factor-beta activation, thus representing a new mechanism of WNT pathway activation in HCC. These experiments establish the first consensus classification framework for HCC based on gene expression profiles and highlight the power of integrating multiple data sets to define a robust molecular taxonomy of the disease. Overall design: Surgically resected 118 tumor tissues from patients with hepatocellular carcinoma (HCC)...
  3. Gene expression arrays of cardiomyocyte ribosome-associated RNAs during zebrafish heart regeneration OmicsDI

    ID: E-GEOD-48914

    Date Released: 08-12-2013

    Description: A transgenic line cmlc2:TRAP was made to express EGFP-fused ribosomal protein L10a (EGFP-L10a) in zebrafish cardiomyocytes. Then ribosom...

  4. Age-dependent aorta transcriptomes in wild-type and apoE-deficient C57BL/6J mice BioProject

    ID: PRJNA104025

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: clerosis cluster and cytokine activity, chemokine receptor activity, and antigen binding in the ATLO cluster suggested candidate genes in relation to inflammation triggered by macrophages or adventitia infiltration, respectively. Among other prototype atherosclerosis genes such as Itgax (complement receptor 4), Cd68, Lysz (lysozyme), Vcam1, and Icam1, the atherosclerosis cluster showed markedly overrepresented prototype macrophage/foam cell genes regulating inflammation in cytokine activity (GO: 0005125): Spp1 (osteopontin) and Il6; in cytokine binding (GO: 0019955) Cd74, Il10rb, Ccr2, and Ccr5; and in immunoglobulin binding (GO: 00119865) the proinflammatory galactose-binding lectin Lgals3, as well as genes in scavenger receptor activity and lipid transporter activity. By contrast, the adventitia cluster showed overrepresented genes regulating B cell recruitment, B cell maturation, germinal center formation, and autoimmunity in cytokine activity including Cxcl13, Ccl21, and Ltb, in CXC chemokine receptor activity the secondary lymphoid organ counterreceptor of CXCL13 Blr1 (also known as Cxcr5), Cxcr3, and Cxcr6; and in antigen binding several histocompatibility-2 loci and various markedly expressed immunoglobulin genes. As embryonic lymph node development and tertiary lymphoid organ neogenesis share common features signal intensities of genes specifying the GO molecular function term lymph node development (GO: 0048535) were examined in arrays prepared from wild-type and apoE-/- aortae. These results showed that Id2, Nfkb1, and Ltbr were constitutively expressed at significant levels in aortae of both mouse genotypes whereas other genes including Lta, Ltb, Glycam1, and the two lymphorganogenic genes Cxcl13 and Ccl21 were induced at 78 w in apoE-deficient aortae only. Thus, genes expressed by macrophage-foam cells and genes regulating ATLO neogenesis, embryonic lymph node development, or B cell maturation were constitutively expressed in the arterial wall in both genotypes or emerged in a stepwise fashion at 32 w and 78 w. To verify microarray signal intensity data, separate aortae extracts were examined by quantitative RT-PCR (QRT-PCR) analyses of wild-type and apoE-deficient mice at 32 and 78 w. These data showed that array signal values accurately reflected gene transcripts. Cell lineage analyses of the adventitial infiltrate a...
  5. The Proteasome Stress Regulon is Controlled by a Pair of NAC Transcription Factors in Arabidopsis BioProject

    ID: PRJNA322265

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: differences between 5DAG Arabidopsis Col-0, rpn10-1, and rpn12a-1 seedlings treated with 100 uM MG132 for 0, 3, or 24 hours. Overall design: Examination of 3 different Arabidopsis seedlin...
  6. Effect of telmisartan on prostate carcinogenesis in TRAP rats BioProject

    ID: PRJNA141557

    Keywords: Transcriptome or Gene expression

    Access Type: download

  7. Trap-80-dependence of TNF-alpha-induced genes OmicsDI

    ID: E-GEOD-12697

    Date Released: 05-01-2014

    Description: can be sub-divided, depending on whether they are Trap-80-dependent or -independent. To examine the generality of this grouping, we performed a microarray analysis of wild-type and Trap-80 knock-do...

  8. Gene trapping in the Asian malaria vector, Anopheles stephensi ArrayExpress

    ID: E-GEOD-78771

    Description: A piggyBac transposon-based gene trap element was transformed into the Asian malaria vector, Anopheles stephensi, and remobilized using the jumpstarter approach usi...

  9. colour data for artificial traps placed on natural backgrounds Dryad

    DateIssued: 04-30-2014

    Description: related to measurement of the colour of a single trap and its background. Data were measured electronically using image analysis of digital photographs. ‘Trap’: trap i.d. (these relate directly to ‘trap’ in ‘Artificial_On_Natural’. Colour: Trap colou...

  10. Microarray analysis of wildtype, Klf3 H275R homozygous and heterozygous, Klf3 CH gene trap homozygous and heterozygous E12.5 embryos ArrayExpress

    ID: E-GEOD-43908

    Description: pression in whole E12.5 embryos containing a gene trap (CH) or point mutation (H275R) within the Klf3 gene Affymetrix microarrays were performed on RNA from wildtype, Klf3 H275R/H275R, Klf3 H275R/+, Klf3 CH homozygous and Klf3 CH heterozygous E12.5 embryo...

  11. Trap-80-dependence of TNF-alpha-induced genes ArrayExpress

    ID: E-GEOD-12697

    Description: can be sub-divided, depending on whether they are Trap-80-dependent or -independent. To examine the generality of this grouping, we performed a microarray analysis of wild-type and Trap-80 knock-do...

  12. Gene expression arrays of cardiomyocyte ribosome-associated RNAs during zebrafish heart regeneration ArrayExpress

    ID: E-GEOD-48914

    Description: A transgenic line cmlc2:TRAP was made to express EGFP-fused ribosomal protein L10a (EGFP-L10a) in zebrafish cardiomyocytes. Then ribosom...

  13. Video 1 - May 29 2015 - Bottlenose dolphin using the one-step process to manipulate a fish trap Dryad

    DateIssued: 11-23-2016

  14. Crystal structure of B.licheniformis Anti-TRAP protein, an antagonist of TRAP-RNA interactions PDB

    ID: PDB:3LD0

    Description: Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA

  15. Colour data for artificial traps placed on artificial backgrounds Dryad

    DateIssued: 04-30-2014

    Description: related to measurement of the colour of a single trap and its background. These traps are a sample created with used in the study, though these traps were not used in the study itself. Data were collected electronically using image analysis of digital photographs. ‘Trap’: Trap i.d. ‘TrpClr’: trap colou...

  16. Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0678), Target EFI-501078... PDB

    ID: PDB:4XF5

    Description: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN

  17. X-Ray Crystallographic Structure of hTrap1 N-terminal Domain-apo PDB

    ID: PDB:5F3K

    Description: Heat shock protein 75 kDa, mitochondrial

  18. CRYSTAL STRUCTURE OF B.SUBTILIS ANTI-TRAP PROTEIN, AN ANTAGONIST OF TRAP-RNA INTERACTIONS PDB

    ID: PDB:2BX9

    Description: TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN-INHIBITORY PROTEIN

  19. Rovero et al_EAM cam trap database.csv Figshare

    ID: doi:10.6084/M9.FIGSHARE.3444005

    Release Date: 12-28-2016

    Description: Camera trap records of medium to large mammals detected in selected mountain blocks and forests within the the Eastern Arc Mountains of Ta...

  20. DawrinCode records - Diptera Dryad

    DateIssued: 09-26-2016

    Description: Specimens were collected at a site in Steel Creek, in Northwest Arkansas, using Malaise pitfall, colored pan, Lindgren funnel, and canopy traps.

    identifiers.ID: doi:10.5061/dryad.bk225/1

Displaying 20 of 1,039 results for "TGFBRAP1"