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  1. Genome-wide analysis of gene expression in wild-type and Sp4 hypomorphic mouse cerebellum BioProject

    ID: PRJNA230783

    Keywords: Transcriptome or Gene expression

    Access Type: download

  2. Natronococcus occultus SP4 : Natronococcus occultus SP4 Genome sequencing BioProject

    ID: PRJNA46985

    Keywords: Genome sequencing

    Access Type: download

  3. Streptococcus pyogenes SP4-LAU : Streptococcus pyogenes SP4-LAU Genome sequencing and assembly BioProject

    ID: PRJNA215879

    Keywords: Genome sequencing and assembly

    Access Type: download

  4. Krüppel-like factor 4 regulates T cell function ArrayExpress

    ID: E-GEOD-24880

    Description: Krüppel-like factor 4 (Klf4), a transcription factor mediating context-dependent activation or repression,...

  5. Krüppel-like factor 4 regulates T cell function BioProject

    ID: PRJNA132021

    Keywords: Transcriptome or Gene expression

    Access Type: download

  6. Dry Valleys, Antarctica - Oligotrophic Lake LV.19.SP4.G1 metagenome... BioProject

    ID: PRJNA368339

    Keywords: metagenome

    Access Type: download

  7. Microarray expression analysis in idiopathic and LRRK2-associated Parkinson's disease (PD) BioProject

    ID: PRJNA225814

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ncompassed genes involved in neural functions and transcription factor functions whereas down-regulated DEGs (n=183) affected basic homeostasis. These data point towards the presence of gene - and also protein - expression changes in DAn from PD patients which co-occur simultaneously along with DNA methylation changes. Overall design: Number of samples analyzed: 14 iPSC-derived dopaminergic neurons . Control (C) samples, no pathological changes: SP9, SP11 SP15 SP17. Samples from idiopathic Parkinson's Disease (IPD) pat...
  8. Dry Valleys, Antarctica - Oligotrophic Lake LV.19.SP4.G1 metagenome... BioProject

    ID: PRJNA363603

    Keywords: metagenome

    Access Type: download

  9. Whole cell mRNA expression profiling in control and complex I deficient patient fibroblasts incubated with DMSO, AICAR, chloramphenicol, and resveratr... ArrayExpress

    ID: E-GEOD-65634

    Description: Background: Transcription control of mitochondrial metabolism is essential for cellular function. A better understanding of this process will a...

  10. Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca PDB

    ID: PDB:3A13

    Description: ribulose-1,2-bisphosphate carboxylase/oxygenase (E.C.4.1.1.39)

  11. Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP PDB

    ID: PDB:3KDN

    Description: Ribulose bisphosphate carboxylase (E.C.4.1.1.39)

  12. Whole cell mRNA expression profiling in control and complex I deficient patient fibroblasts incubated with DMSO, AICAR, chloramphenicol, and resveratr... BioProject

    ID: PRJNA274569

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: Background: Transcription control of mitochondrial metabolism is essential for cellular function. A better understanding of this process will a...
  13. Comparison of gene expression profiles by CD3+CD4+ thymocytes derived from fetal and adult hematopoietic stem cells ArrayExpress

    ID: E-GEOD-25085

    Description: and allowed to mature into single positive CD4+ (SP4) thymocytes over the course of 7-8 weeks. SP4 thymocytes from injected stem cells were subsequently sort-purified from thymic implants and gene expression was performed. HSC from fetal (age 18-22 gestational weeks) and adult (age: 19-43 year old) HLA-A2+ donors were obtained from different tissues. After injection into human fetal thymic i...

  14. Gene Expression Profile during human CD4+ T cell differentiation BioProject

    ID: PRJNA90033

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: P), CD3highCD4+CD8- "single positive" thymocytes (SP4), CD3+CD4+CD8-CD45RA+CD62L+ naïve T cells from cord blood (CB4+), and CD3+CD4+CD8-CD45RA+CD62L+ naïve T cells from adult blood (AB4+). Keywords = Microarray Keywords = gene expression Keywords = thymocytes Keywords = naïve CD4+ T cell Keywords = recent thymic emigrants Keywords: other...
  15. Comparison of gene expression profiles by CD3+CD4+ thymocytes derived from fetal and adult hematopoietic stem cells BioProject

    ID: PRJNA142743

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: and allowed to mature into single positive CD4+ (SP4) thymocytes over the course of 7-8 weeks. SP4 thymocytes from injected stem cells were subsequently sort-purified from thymic implants and gene expression was performed. Overall design: HSC from fetal (age 18-22 gestational weeks) and adult (age: 19-43 year old) HLA-A2+ donors were obtained from different tissues. After injection into huma...
  16. Transcription profiling of human fetal thymocytes and circulating naive T cells ArrayExpress

    ID: E-GEOD-1460

    Description: P), CD3highCD4+CD8- "single positive" thymocytes (SP4), CD3+CD4+CD8-CD45RA+CD62L+ naïve T cells from cord blood (CB4+), and CD3+CD4+CD8-CD45RA+CD62L+ naïve T cells from adult blood (AB4+)....

  17. Expression data from CD4 single positive thymocyte subsets from C57BL/6 mice of 6-8 wks of age BioProject

    ID: PRJNA143871

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: our subsets of CD4 SP, namely, SP1, SP2, SP3, and SP4 that follow a functional maturation program and a sequential emergence during mouse ontogeny. We used microarray to detail the global programm of gene expression during the maturation of murine CD4 single positive thymocytes Overall design: Four subsets of CD4+CD8-CD25-NK1.1- thymocytes from C57BL/6 mice of 6-8 wks of age were purified for RNA extraction and hybridization on Affymetrix microarrays, namely, SP1 (Qa-2-6C10+CD69+), SP2 (Qa-2-6C10-CD69+), SP3 (Qa-2-6C10-CD69-), SP4
  18. Whole Genome Expression Array in Human T-cell Acute Lymphoblastic Leukemia ArrayExpress

    ID: E-GEOD-46170

    Description: D3neg,CD4,CD8poz), ISP(Immature single positive), SP4(Single positive CD4), SP8 (Single positive CD8)....

  19. Expression data from CD4 single positive thymocyte subsets from C57BL/6 mice of 6-8 wks of age ArrayExpress

    ID: E-GEOD-30083

    Description: our subsets of CD4 SP, namely, SP1, SP2, SP3, and SP4 that follow a functional maturation program and a sequential emergence during mouse ontogeny. We used microarray to detail the global programm of gene expression during the maturation of murine CD4 single positive thymocytes Four subsets of CD4+CD8-CD25-NK1.1- thymocytes from C57BL/6 mice of 6-8 wks of age were purified for RNA extraction and hybridization on Affymetrix microarrays, namely, SP1 (Qa-2-6C10+CD69+), SP2 (Qa-2-6C10-CD69+), SP3 (Qa-2-6C10-CD69-), SP4 (Qa-2+6C10-C...

  20. ANP7_ZOAAM UniProt:Swiss-Prot

    ID: P19611

    Description: Ice-structuring protein SP4(HPLC 7) AFP-like Important for ice-binding Important for ice-binding Important for ice-binding Important for ice-binding...

  21. Whole Genome Expression Array in Human T-cell Acute Lymphoblastic Leukemia BioProject

    ID: PRJNA197490

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: D3neg,CD4,CD8poz), ISP(Immature single positive), SP4(Single positive CD4), SP8 (Single positive CD8)....
  22. Synergistic, context-dependent and hierarchical functions of hematopoietic progenitor niche components ArrayExpress

    ID: E-GEOD-33268

    Description: ocytes; DN3, CD4/CD8-negative stage 3 thymocytes; SP4, CD4 single-positive thymocytes; SP8, CD8 single-positive thymocytes; B IgM-, IgM surface negative B cells; B IgM+, IgM surface positive B cells; B IgM- -/-, IgM surface negative B cells from Foxn1-deficient genotype....

  23. Comparison of gene expression profiles by CD3+CD4+ thymocytes derived from fetal and adult hematopoietic stem cells OmicsDI

    ID: E-GEOD-25085

    Date Released: 12-17-2010

    Description: and allowed to mature into single positive CD4+ (SP4) thymocytes over the course of 7-8 weeks. SP4 thymocytes from injected stem cells were subsequently sort-purified from thymic implants and gene expression was performed. HSC from fetal (age 18-22 gestational weeks) and adult (age: 19-43 year old) HLA-A2+ donors were obtained from different tissues. After injection into human fetal thymic i...

  24. Krüppel-like factor 4 regulates T cell function OmicsDI

    ID: E-GEOD-24880

    Date Released: 03-27-2012

    Description: Krüppel-like factor 4 (Klf4), a transcription factor mediating context-dependent activation or repression,...

  25. ChIPseq examination of EAP-1 binding across generations of spr-5(by101) mutant worms BioProject

    ID: PRJNA226690

    Keywords: Epigenomics

    Access Type: download

  26. Expression data from CD4 single positive thymocyte subsets from C57BL/6 mice of 6-8 wks of age OmicsDI

    ID: E-GEOD-30083

    Date Released: 06-26-2012

    Description: our subsets of CD4 SP, namely, SP1, SP2, SP3, and SP4 that follow a functional maturation program and a sequential emergence during mouse ontogeny. We used microarray to detail the global programm of gene expression during the maturation of murine CD4 single positive thymocytes Four subsets of CD4+CD8-CD25-NK1.1- thymocytes from C57BL/6 mice of 6-8 wks of age were purified for RNA extraction and hybridization on Affymetrix microarrays, namely, SP1 (Qa-2-6C10+CD69+), SP2 (Qa-2-6C10-CD69+), SP3 (Qa-2-6C10-CD69-), SP4 (Qa-2+6C10-C...

  27. Synergistic, context-dependent and hierarchical functions of hematopoietic progenitor niche components. BioProject

    ID: PRJNA149061

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ocytes; DN3, CD4/CD8-negative stage 3 thymocytes; SP4, CD4 single-positive thymocytes; SP8, CD8 single-positive thymocytes; B IgM-, IgM surface negative B cells; B IgM+, IgM surface positive B cells; B IgM- -/-, IgM surface negative B cells from Foxn1-deficient genotype....
  28. Transcriptome profiling of the ovine pars tuberalis in long and short photoperiod conditions [4-22 weeks] BioProject

    ID: PRJNA275351

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: Persistent free-running circannual (circa 1-year) rhythms have evolved in animals to regulate hormone cycles and time annual reproduction. In mammals, these are synchroniz...
  29. ChIPseq examination of EAP-1 binding across generations of spr-5(by101) mutant worms OmicsDI

    ID: E-GEOD-52102

    Date Released: 06-01-2014

    Description: istone H3 lysine 4 dimethyl (H3K4me2) demethylase spr-5 leads to inherited accumulation of the euchromatic H3K4me2 mark and progressive decline in fertility. Here we identified a genetic network of chromatin-modifying factors, including the H3K4me1/me2 methyltransferases SET-17 and SET-30, the H3K9me1/me2...

  30. Innate immunity and the evolution of resistance to an emerging infectious disease in a wild bird ArrayExpress

    ID: E-GEOD-35931

    Description: lar inoculation with 20 μl of culture containing 1 x 104 to 1 x 106 color changing units/ml of an early 2007 Auburn MG isolate. All infected birds were inoculated with precisely the same volume of the same culture. Control birds were sham infected using sterile SP4 medium (Whitcomb 1983). Infected birds were euthanized three days (N=6 from Arizona and N=11 from Alabama) and 14 days (N=11 from Arizona and N=12 from Alabama) after treatment. Control birds were euthanized 14 days after sham-inoculation; Control (N=11 birds from Arizona and 9 from Alabama) and infected birds were maintained under identical conditions, but in separate rooms of an aviary. Infected birds were euthanized three days (N=6 from Arizona and N=11 from Alabama) and 14 days (N=11 from Arizona and N=12 from Alabama) after treatment. Control birds were euthanized 14 days after sham-inoculation. We used a common reference design (Yang & Speed 2002), in which we pooled 2 to 6 spleens from birds from the same population in the same treatment to generate enough mRNA for microarray hybridizations and hybridized two pools for each treatment from each population....

  31. ChIPseq examination of EAP-1 binding across generations of spr-5(by101) mutant worms ArrayExpress

    ID: E-GEOD-52102

    Description: istone H3 lysine 4 dimethyl (H3K4me2) demethylase spr-5 leads to inherited accumulation of the euchromatic H3K4me2 mark and progressive decline in fertility. Here we identified a genetic network of chromatin-modifying factors, including the H3K4me1/me2 methyltransferases SET-17 and SET-30, the H3K9me1/me2...

  32. A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory OmicsDI

    ID: E-GEOD-14432

    Date Released: 05-01-2014

    Description: age populations taken from generation 1,13 and 26 spr-5 mutant animals as well as wild-type animals reveals a large class of spermatogenesis-expressed genes whose expression coordinately increased from generations 1

  33. Cleaved Serpin 42Da PDB

    ID: PDB:4P0O

    Description: Serine protease inhibitor 4, isoform B

    gene.name: Spn42Da, sp4, Spn4, CG9453, Dmel_CG9453
  34. Cleaved Serpin 42Da (C 2 2 21) PDB

    ID: PDB:4P0F

    Description: Serine protease inhibitor 4, isoform B

    gene.name: Spn42Da, sp4, Spn4, CG9453, Dmel_CG9453
  35. all data - from micrographs to spectra Dryad

    DateIssued: 11-11-2014

    Description: Please refer to the ReadMe file for more information.

    identifiers.ID: doi:10.5061/dryad.3sn4t/1
  36. Innate immunity and the evolution of resistance to an emerging infectious disease in a wild bird BioProject

    ID: PRJNA152071

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: lar inoculation with 20 μl of culture containing 1 x 104 to 1 x 106 color changing units/ml of an early 2007 Auburn MG isolate. All infected birds were inoculated with precisely the same volume of the same culture. Control birds were sham infected using sterile SP4 medium (Whitcomb 1983). Infected birds were euthanized three days (N=6 from Arizona and N=11 from Alabama) and 14 days (N=11 from Arizona and N=12 from Alabama) after treatment. Control birds were euthanized 14 days after sham-inoculation; Control (N=11 birds from Arizona and 9 from Alabama) and infected birds were maintained under identical conditions, but in separate rooms of an aviary. Infected birds were euthanized three days (N=6 from Arizona and N=11 from Alabama) and 14 days (N=11 from Arizona and N=12 from Alabama) after treatment. Control birds were euthanized 14 days after sham-inoculation. We used a common reference design (Yang & Speed 2002), in which we pooled 2 to 6 spleens from birds from the same population in the same treatment to generate enough mRNA for microarray hybridizations and hybridized two pools for each treatment from each population....
  37. A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory ArrayExpress

    ID: E-GEOD-14432

    Description: age populations taken from generation 1,13 and 26 spr-5 mutant animals as well as wild-type animals reveals a large class of spermatogenesis-expressed genes whose expression coordinately increased from generations 1

  38. Whole cell mRNA expression profiling in control and complex I deficient patient fibroblasts incubated with DMSO, AICAR, chloramphenicol, and resveratr... OmicsDI

    ID: E-GEOD-65634

    Date Released: 09-06-2015

    Description: Background: Transcription control of mitochondrial metabolism is essential for cellular function. A better understanding of this process will a...

  39. synthetic Mycoplasma mycoides JCVI-syn1.0 : Synthetic Mycoplasma mycoides JCVI-syn1.0 genome sequencing BioProject

    ID: PRJNA48403

    Keywords: Genome sequencing

    Access Type: download

    dataset.description: m a yeast clone. The sequenced clone is sMmYCp235-1. This synthetic genome contains all but 14 of the genes of wild type Mycoplasma mycoides subspecies capri strain GM12. Among the genes deleted from the genome are components of the ABC glycerol transporter operon gtsABCD. These genes are involved in the production of hydrogen peroxide, which is believed to be the principal virulence factor of the mycoides group of mycoplas...
  40. Whole Genome Expression Array in Human T-cell Acute Lymphoblastic Leukemia OmicsDI

    ID: E-GEOD-46170

    Date Released: 06-03-2014

    Description: D3neg,CD4,CD8poz), ISP(Immature single positive), SP4(Single positive CD4), SP8 (Single positive CD8)....

  41. A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory BioProject

    ID: PRJNA111763

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: age populations taken from generation 1,13 and 26 spr-5 mutant animals as well as wild-type animals reveals a large class of spermatogenesis-expressed genes whose expression coordinately increased from generations 1
  42. Transcription profiling of human fetal thymocytes and circulating naive T cells OmicsDI

    ID: E-GEOD-1460

    Date Released: 03-27-2012

    Description: P), CD3highCD4+CD8- "single positive" thymocytes (SP4), CD3+CD4+CD8-CD45RA+CD62L+ naïve T cells from cord blood (CB4+), and CD3+CD4+CD8-CD45RA+CD62L+ naïve T cells from adult blood (AB4+)....

  43. RCOR_CAEEL UniProt:Swiss-Prot

    ID: Q18919

    Description: REST corepressor spr-1 ELM2 SANT 1 SANT 2 GATA-type

  44. MIP_DROME UniProt:Swiss-Prot

    ID: Q9VVF7

    Description: ; when associated with A-67 Reduced activation of SPR; when associated with A-202 Reduced activation of SPR...

  45. MTBS_BPSPR UniProt:Swiss-Prot

    ID: P00476

    Description: Modification methylase SPRI SAM-dependent MTase C5-type (in Ref. 2; AAA32604) (in Ref. 2; AAA32604)

    taxonomicInformation.name: Bacillus phage SPR
  46. Resistant response of leaves of upland cotton line Im216 to Xanthomonas campestris pv. malvacearum race 1 ArrayExpress

    ID: E-GEOD-2851

    Description: with Xanthomonas campestris pv. malvacearum race 1. Fifth or sixth leaves of the bacterial blight-resistant cotton line Im216, which had been grown in a plant growth chamber, were infiltrated with a suspension of about 5x10^6 colony-forming units m...

  47. Solution NMR structure of lipoprotein spr from Escherichia coli K12. Northeast Structural Genomics target ER541-37-162 PDB

    ID: PDB:2K1G

    Description: Lipoprotein spr

  48. Resistant response of leaves of upland cotton line Im216 to Xanthomonas campestris pv. malvacearum race 1 OmicsDI

    ID: E-GEOD-2851

    Date Released: 06-10-2011

    Description: with Xanthomonas campestris pv. malvacearum race 1. Fifth or sixth leaves of the bacterial blight-resistant cotton line Im216, which had been grown in a plant growth chamber, were infiltrated with a suspension of about 5x10^6 colony-forming units m...

  49. Synergistic, context-dependent and hierarchical functions of hematopoietic progenitor niche components. OmicsDI

    ID: E-GEOD-33268

    Date Released: 09-26-2012

    Description: ocytes; DN3, CD4/CD8-negative stage 3 thymocytes; SP4, CD4 single-positive thymocytes; SP8, CD8 single-positive thymocytes; B IgM-, IgM surface negative B cells; B IgM+, IgM surface positive B cells; B IgM- -/-, IgM surface negative B cells from Foxn1-deficient genotype....

  50. Supervised Pretrial Release Programs, 1979-1982: Miami, Milwaukee, and Portland Dataverse

    Description: f different types of supervised pretrial release (SPR). Four major types of effects were examined: (1) defendants' behaviors while awaiting trial (failure to appear and arrests for new offenses), (2) the costs of

    Person: Austin, James Krisberg, Barry

    Release Date: 04-08-2015

  51. VIM-2-1, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening PDB

    ID: PDB:5ACW

    Description: BETA-LACTAMASE (E.C.3.5.2.6)

  52. Crystal Structure of Human Sepiapterin Reductase in complex with NADP+ PDB

    ID: PDB:1Z6Z

    Description: Sepiapterin reductase (E.C.1.1.1.153)

    gene.name: SPR
  53. SPY2_CHICK UniProt:Swiss-Prot

    ID: Q9PTL2

    Description: Protein sprouty homolog 2 SPR Cys-rich

  54. SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors PDB

    ID: PDB:4I0J

    Description: Beta-secretase 1 (E.C.3.4.23.46)

  55. SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors PDB

    ID: PDB:4I0I

    Description: Beta-secretase 1 (E.C.3.4.23.46)

  56. VIM-2-2, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening PDB

    ID: PDB:5ACX

    Description: BETA-LACTAMASE (E.C.3.5.2.6)

  57. Crystal structure of human sepiapterin reductase in complex with sulfasalazine PDB

    ID: PDB:4J7X

    Description: Sepiapterin reductase (E.C.1.1.1.153)

    gene.name: SPR
  58. SPRE2_RAT UniProt:Swiss-Prot

    ID: Q3C2P8

    Description: Sprouty-related, EVH1 domain-containing protein 2 WH1 KBD SPR

  59. VIM-2-OX, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening PDB

    ID: PDB:5ACV

    Description: BETA-LACTAMASE (E.C.3.5.2.6)

  60. VIM-2-NAT, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening PDB

    ID: PDB:5ACU

    Description: BETA-LACTAMASE (E.C.3.5.2.6)

  61. Crystal structure of human sepiapterin reductase in complex with an N-acetylserotinin analogue PDB

    ID: PDB:4XWY

    Description: HUMAN SEPIAPTERIN REDUCTASE (E.C.1.1.1.153)

    gene.name: SPR
  62. Crystal structure of human sepiapterin reductase in complex with sulfapyridine PDB

    ID: PDB:4HWK

    Description: Sepiapterin reductase (E.C.1.1.1.153)

    gene.name: SPR
  63. Resistant response of leaves of upland cotton line Im216 to Xanthomonas campestris pv. malvacearum race 1 BioProject

    ID: PRJNA91909

    Keywords: Transcriptome or Gene expression

    Access Type: download

  64. SPY1_MOUSE UniProt:Swiss-Prot

    ID: Q9QXV9

    Description: Protein sprouty homolog 1 SPR Poly-Ser Cys-rich N-acetylmethionine

  65. SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors. PDB

    ID: PDB:4I0H

    Description: Beta-secretase 1 (E.C.3.4.23.46)

  66. Crystal structure of human sepiapterin reductase in complex with sulfathiazole PDB

    ID: PDB:4J7U

    Description: Sepiapterin reductase (E.C.1.1.1.153)

    gene.name: SPR
  67. Human sepiapterin reductase in complex with the cofactor NADP+ and the trypthophan metabolite xanthurenic acid PDB

    ID: PDB:4Z3K

    Description: human Sepiapterin reductase (E.C.1.1.1.153)

    gene.name: SPR
  68. CT01 vs wild-type at 3% O2 OmicsDI

    ID: E-GEOD-2146

    Date Released: 05-01-2014

    Description: of wild-type (2.4.1) and CT01 (contains an omega Spr/Smr insertion in RSP4157) gene expression; growth condition is (3% O2 + 96%N2 + 1%CO2) semi-aerobic growth in the dark...

  69. SPY1_CHICK UniProt:Swiss-Prot

    ID: Q9PTL1

    Description: Protein sprouty homolog 1 SPR Cys-rich

  70. SPY2_BOVIN UniProt:Swiss-Prot

    ID: Q08E39

    Description: Protein sprouty homolog 2 SPR Poly-Ser Cys-rich Cleavage; by FAP

  71. SPRE2_XENTR UniProt:Swiss-Prot

    ID: Q5Y171

    Description: Sprouty-related, EVH1 domain-containing protein 2 WH1 KBD SPR Poly-Asp

  72. DNA methylation signatures of parental deprivation in peripheral tissues of male rhesus macaques ArrayExpress

    ID: E-GEOD-84020

    Description: rol mother-reared (MR) and surrogate peer-reared (SPR) male monkeys whole blood (5 vs 5) and buccal swab samples (3 vs 3) were analyzed by methylated DNA immunoprecipitation (MeDIP) coupled with promoter tiling arrays....

  73. Tree Comparison Test (SPR) Dryad

    DateIssued: 05-19-2014

    Description: Script written for the TNT phylogenetic program for testing the significant of topological similarity between two trees relative to randomly generated...

  74. SPRE1_XENTR UniProt:Swiss-Prot

    ID: Q66JG9

    Description: Sprouty-related, EVH1 domain-containing protein 1 WH1 KBD SPR Poly-Gly

  75. SPY4_BOVIN UniProt:Swiss-Prot

    ID: A2VDU1

    Description: Protein sprouty homolog 4 SPR Poly-Ser Cys-rich N-acetylmethionine Phosphoserine

  76. SPRE_XENLA UniProt:Swiss-Prot

    ID: Q7ZY31

    Description: Sepiapterin reductase NADP NADP NADP NADP Substrate binding Substrate NADP Substrate; via amide nitrogen Substrate

    dataset.version: 1
  77. SPRE2_PONAB UniProt:Swiss-Prot

    ID: Q5RDN2

    Description: Sprouty-related, EVH1 domain-containing protein 2 WH1 KBD SPR Phosphoserine

  78. Identification of N6-adenine methylation in C. elegans DNA OmicsDI

    ID: E-GEOD-66504

    Date Released: 08-19-2015

    Description: Importantly, we identify a DNA demethylase, NMAD-1, and a potential DNA methyltransferase, DAMT-1, which regulate 6mA levels and crosstalk between methylation of histone H3K4me2 and 6mA, and control the epigenetic inheritance of phenotypes associated with the loss of the H3K4me2 demethylase spr-5. Together, these data identify a novel DNA modification in C. elegans and raise the exciting possibility that 6mA may be a carrier of heritable epigenetic information in eukaryotes. SMRT-sequencing for a mixed cell population of wildtype worms 6mA ChIP-Seq for a mixed cell population of wildtype worms...

  79. SPY2_CHLAE UniProt:Swiss-Prot

    ID: Q866R9

    Description: Protein sprouty homolog 2 SPR Poly-Ser Cys-rich Cleavage; by FAP

  80. SPRE2_DANRE UniProt:Swiss-Prot

    ID: Q6NYK3

    Description: Sprouty-related, EVH1 domain-containing protein 2 WH1 KBD SPR

  81. SPRE2_MOUSE UniProt:Swiss-Prot

    ID: Q924S7

    Description: Sprouty-related, EVH1 domain-containing protein 2 WH1 KBD SPR

  82. SPRE_MERUN UniProt:Swiss-Prot

    ID: Q8R536

    Description: Sepiapterin reductase NADP NADP NADP NADP Substrate binding Substrate NADP Substrate; via amide nitrogen Substrate N-acetylmethionine Phosphoserine Ph...

    dataset.version: 1
  83. SPRE_XENTR UniProt:Swiss-Prot

    ID: B0BML7

    Description: Sepiapterin reductase NADP NADP NADP NADP Substrate binding Substrate NADP Substrate; via amide nitrogen Substrate

    dataset.version: 1
  84. SPY2_MACFA UniProt:Swiss-Prot

    ID: Q2PFN5

    Description: Protein sprouty homolog 2 SPR Poly-Ser Cys-rich Cleavage; by FAP

  85. CT01 vs wild-type at 3% O2 BioProject

    ID: PRJNA91401

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: of wild-type (2.4.1) and CT01 (contains an omega Spr/Smr insertion in RSP4157) gene expression; growth condition is (3% O2 + 96%N2 + 1%CO2) semi-aerobic growth in the dark...
  86. DJ-1 as high-fat diet associated protein OmicsDI

    ID: PXD000379

    Date Released: 03-26-2014

    Description: n 16 protein spots. One isoform of the protein DJ-1 was elevated in the high fat diet group in the analyzed three different mouse strains SWR/J, C57BL/6N and AKR/J. Large scale validation of DJ-1 isoforms in individual samples and tissues confirmed a shift in the pattern of DJ-1 isoforms towards more acidic isoforms in several brain and peripheral tissues after feeding a high-fat diet for 10 days. The identification of an oxidation of cysteine 106 as well as a 2-succinyl modification of the same residue by mass spectrometry not only explains the isoelectric shift of DJ-1 but also links our results to similar shifts of DJ-1 observed in neurodegenerative disease states under oxidative stress. We hypothesize that DJ-1 is a common physiological sensor involved in both nutrition-induced effects and neurodegenerative disease...

  87. Innate immunity and the evolution of resistance to an emerging infectious disease in a wild bird OmicsDI

    ID: E-GEOD-35931

    Date Released: 05-02-2014

    Description: lar inoculation with 20 μl of culture containing 1 x 104 to 1 x 106 color changing units/ml of an early 2007 Auburn MG isolate. All infected birds were inoculated with precisely the same volume of the same culture. Control birds were sham infected using sterile SP4 medium (Whitcomb 1983). Infected birds were euthanized three days (N=6 from Arizona and N=11 from Alabama) and 14 days (N=11 from Arizona and N=12 from Alabama) after treatment. Control birds were euthanized 14 days after sham-inoculation; Control (N=11 birds from Arizona and 9 from Alabama) and infected birds were maintained under identical conditions, but in separate rooms of an aviary. Infected birds were euthanized three days (N=6 from Arizona and N=11 from Alabama) and 14 days (N=11 from Arizona and N=12 from Alabama) after treatment. Control birds were euthanized 14 days after sham-inoculation. We used a common reference design (Yang & Speed 2002), in which we pooled 2 to 6 spleens from birds from the same population in the same treatment to generate enough mRNA for microarray hybridizations and hybridized two pools for each treatment from each population....

  88. SPY1_CEREL UniProt:Swiss-Prot

    ID: Q1L0X2

    Description: Protein sprouty homolog 1 SPR Cys-rich N-acetylmethionine

  89. CT01 vs wild-type at 3% O2 ArrayExpress

    ID: E-GEOD-2146

    Description: of wild-type (2.4.1) and CT01 (contains an omega Spr/Smr insertion in RSP4157) gene expression; growth condition is (3% O2 + 96%N2 + 1%CO2) semi-aerobic growth in the dark...

  90. SPRE_RAT UniProt:Swiss-Prot

    ID: P18297

    Description: Sepiapterin reductase NADP NADP NADP NADP Substrate binding Substrate NADP Substrate; via amide nitrogen Substrate N-acetylmethionine Phosphoserine Ph...

    dataset.version: 1
  91. SPY1_BOVIN UniProt:Swiss-Prot

    ID: A5D992

    Description: Protein sprouty homolog 1 SPR Cys-rich N-acetylmethionine

  92. Crystal structure analysis of cruzain with Fragment 1 (N-(1H-benzimidazol-2-yl)-1,3-dimethyl-pyrazole-4-carboxamide) PDB

    ID: PDB:4W5B

    Description: Cruzain

  93. Chlorobium tepidum Sepiapterin Reductase complexed with NADP and Sepiapterin PDB

    ID: PDB:2BD0

    Description: sepiapterin reductase (E.C.1.1.1.153)

    datasetDistributions.accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=2BD0&bionumber=1
  94. Crystal Structure of Protease Anisep from Arthrobacter Nicotinovorans PDB

    ID: PDB:3WY8

    Description: Serine protease(E.C.3.4.21.1)

    gene.name: Spr
  95. Isolated p110a subunit of PI3Ka provides a platform for structure-based drug design PDB

    ID: PDB:4TV3

    Description: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (E.C.2.7.1.153)

    dataset.keywords: Surface Plasmon Resonance (SPR)
  96. Identification of N6-adenine methylation in C. elegans DNA ArrayExpress

    ID: E-GEOD-66504

    Description: Importantly, we identify a DNA demethylase, NMAD-1, and a potential DNA methyltransferase, DAMT-1, which regulate 6mA levels and crosstalk between methylation of histone H3K4me2 and 6mA, and control the epigenetic inheritance of phenotypes associated with the loss of the H3K4me2 demethylase spr-5. Together, these data identify a novel DNA modification in C. elegans and raise the exciting possibility that 6mA may be a carrier of heritable epigenetic information in eukaryotes. SMRT-sequencing for a mixed cell population of wildtype worms 6mA ChIP-Seq for a mixed cell population of wildtype worms...

  97. SEPIAPTERIN REDUCTASE COMPLEXED WITH N-ACETYL SEROTONIN PDB

    ID: PDB:1NAS

    Description: SEPIAPTERIN REDUCTASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, N-ACETYL SEROTONIN

    datasetDistributions.accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=1NAS&bionumber=1
  98. Isolated p110a subunit of PI3Ka provides a platform for structure-based drug design PDB

    ID: PDB:4TUU

    Description: Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (E.C.2.7.1.153)

    dataset.keywords: Surface Plasmon Resonance (SPR)
  99. ructure analysis of cruzain with three Fragments: 1 (N-(1H-benzimidazol-2-yl)-1,3-dimethyl-pyrazole-4-carboxamide), 6 (2-amino-4,6-difluorobenzothiazole) and 9 (N-(1H-benzimidazol-2-yl)-3-(4-... PDB

    ID: PDB:4W5C

    Description: Cruzain (E.C.3.4.22.52)

  100. Crystal Structure of the lectin domain of F18 fimbrial adhesin FedF. PDB

    ID: PDB:4B4P

    Description: F18 FIMBRIAL ADHESIN AC

    dataset.keywords: SPR

Displaying 100 of 562 results for "SP4"