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Displaying 30 of 30 results for "NLGN4X"
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  1. Crystal structure of the synaptic protein neuroligin 4 PDB

    ID: PDB:3BE8

    Description: Neuroligin-4, X-linked

  2. Crystal structure of synaptic protein neuroligin-4 in complex with neurexin-beta 1: alternative refinement PDB

    ID: PDB:2WQZ

    Description: NEUROLIGIN 4, X-LINKED, NEUREXIN-1-BETA

  3. NLGNX_MACMU UniProt:Swiss-Prot

    ID: Q8WMG7

    Description: Neuroligin-4, X-linked Extracellular Helical Cytoplasmic

  4. Human immunodeficiency virus 1 strain:NL4-3 : Human immunodeficiency virus 1 strain:NL4-3 Targeted Locus (Loci) BioProject

    ID: PRJNA259391

    Keywords: targeted loci

    Access Type: download

  5. REVISITED CRYSTAL STRUCTURE OF NEUREXIN1BETA-NEUROLIGIN4 COMPLEX PDB

    ID: PDB:2XB6

    Description: NEUROLIGIN-4, X-LINKED, NEUREXIN-1-BETA

  6. Full-length sequencing of a heterogeneous five HIV-1 virus mixture BioProject

    ID: PRJNA217811

    Keywords: genome sequencing

    Access Type: download

  7. HIV-1 NL4-3 : A population of HIV-1 NL4-3 sequences from an evolution experiment (raw sequence reads) BioProject

    ID: PRJNA304947

    Keywords: raw sequence reads

    Access Type: download

    dataset.description: saged HIV-1 NL4-3 for 90 transfers in MT-2 and MT-4 T-cell lines and monitored the changes of the population by Illumina sequencing....
  8. HIV-1 group M strain:NL4-3 or R7 : HIV-1 group M strain:NL4-3 or R7 Phenotype or Genotype BioProject

    ID: PRJNA326016

    Keywords: phenotype or genotype

    Access Type: download

  9. Differentially Expressed Pseudogenes in HIV-1 Infection ArrayExpress

    ID: E-GEOD-70785

    Description: We analyzed transcriptomic data from infected and uninfected T-cells to identify pseudogenes and their parent genes showing differential expression in...

  10. Differentially Expressed Pseudogenes in HIV-1 Infection BioProject

    ID: PRJNA289529

    Keywords: Transcriptome or Gene expression

    Access Type: download

  11. Human immunodeficiency virus strain:NL4-3 : Human immunodeficiency virus strain:NL4-3 Raw sequence reads BioProject

    ID: PRJNA313963

    Keywords: raw sequence reads

    Access Type: download

  12. HIV-1 Protease NL4-3 in complex with inhibitor, TL-3 PDB

    ID: PDB:2AZ8

    Description: Protease retropepsin (E.C.3.4.23.16)/tripeptide inhibitor TL-3

    dataAcquisition.name: X-RAY DIFFRACTION
  13. Structure of HIV Protease NL4-3 in an Unliganded State PDB

    ID: PDB:2HB4

    Description: Protease (E.C.3.4.23.16)

    dataAcquisition.name: X-RAY DIFFRACTION
  14. HIV-1 Protease NL4-3 1X mutant PDB

    ID: PDB:2AZ9

    Description: Protease retropepsin (E.C.3.4.23.16)/tripeptide inhibitor TL-3

    dataAcquisition.name: X-RAY DIFFRACTION
  15. HIV-1 Protease NL4-3 3X mutant in complex with inhibitor, TL-3 PDB

    ID: PDB:2AZB

    Description: Protease retropepsin (E.C.3.4.23.16)/tripeptide inhibitor TL-3

    dataAcquisition.name: X-RAY DIFFRACTION
  16. HIV-1 Protease NL4-3 6X mutant PDB

    ID: PDB:2AZC

    Description: Protease retropepsin (E.C.3.4.23.16)/tripeptide inhibitor TL-3

    dataAcquisition.name: X-RAY DIFFRACTION
  17. Toward a Better Understanding of Potential Roles of Astrocytes in HIV-1-associated Neurocognitive Disorders ArrayExpress

    ID: E-GEOD-17383

    Description: We present a microarray analysis of primary mouse astrocytes exposed to HIV-1 in culture. Results are compared with previous genomic studies of HIV-1 ...

  18. Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNAs by HIV-1 ArrayExpress

    ID: E-GEOD-21892

    Description: Herein expression trends of host miRNA were measured in CEMx174 lymphocytes infected with HIV-1NL4-3 or derivative strains deficient in Tat RSS activi...

  19. Human immunodeficiency virus 1 isolate:NL4-3 : Impact of 5-azacytidine and 5-aza-2'-deoxycytidine on the mutagenesis of HIV-1 BioProject

    ID: PRJNA309859

    Keywords: raw sequence reads

    Access Type: download

  20. Spatio-temporal transcriptome of the human brain ArrayExpress

    ID: E-GEOD-25219

    Description: cated in brain growth and cognitive function, and NLGN4X, a candidate gene for autism spectrum disorders. We found that the developing transcriptome is organized into functionally distinct large-scale networks of co-regulated transcripts. We also observed marked differences in expression trajectories of genes associated with specific neurodevelopmental processes, neural cell types, neurotransmitter systems, autism spectrum disorders, and schizophrenia. Association analysis of the SNP genotypes and transcriptome revealed potential polymorphic regulators of gene expression in different regions across development. This study provides a comprehensive, publicly available dataset on the spatiotemporal human brain transcriptome and new insights into the transcriptional foundations of brain development and evolution. This submission represents the transcriptome component of the study. Submitter did not submit SNP and CNV data due to privacy issue of patients....

  21. Data from: The W100 pocket on HIV-1 gp120 penetrated by b12 is not a target for other CD4bs monoclonal antibodies Dryad

    DateIssued: 04-25-2012

    Description: BACKGROUND: The conserved CD4 binding site (CD4bs) on HIV-1 gp120 is a major target for vaccines. It is a priority to determine sites and structures w...

  22. An expression atlas of rice mRNAs and small RNAs BioProject

    ID: PRJNA98409

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ) mRNA libraries in our database, but it includes 4 mature leaf biological replicates and 2 mature root biological replicates. In order to reduce the redundancy, we created combined sets (NL4 and NR2) and submitted those data. The method for the MPSS sequencing of mRNAs is described in Brenner et al. (Nat Biotechnol. 2000 18:630)....
  23. Deep Mutational Scanning of HIV tat and rev in a non-overlapped context ArrayExpress

    ID: E-MTAB-5154

    Description: The data here was used to generate Figures 3 and 4 and 7 and might be of general use for people interested in deep mutational scanning, looking for signatures of epistasis in rev or tat, or reanalyzing and mining the data. FAQ: Why do the ends of each amplicon have such variation? In order to increase diversity across the flowcell, I pooled standard primers with N, NN, and NNN extensions to throw amplicons out of phase. When aligning you should trim the ends or ignore them. This means that the overlap between PE's can vary by 3 nt. Why are the filenames not easy to deal with? The filenames are tied to separate MiSeq runs. I hope to clean up the nomenclature and update this entry in the future while preserving the run information. You can get a sen...

  24. Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNAs by HIV-1 BioProject

    ID: PRJNA126907

    Keywords: Transcriptome or Gene expression

    Access Type: download

  25. Human immunodeficiency virus 1 strain:NL4-3 : RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP) BioProject

    ID: PRJNA248760

    Keywords: other

    Access Type: download

  26. Toward a Better Understanding of Potential Roles of Astrocytes in HIV-1-associated Neurocognitive Disorders BioProject

    ID: PRJNA118813

    Keywords: Transcriptome or Gene expression

    Access Type: download

  27. Crystal Structure of the alpha-Neurexin-1 ectodomain, LNS 2-6 PDB

    ID: PDB:3POY

    Description: Neurexin-1-alpha

    dataAcquisition.name: X-RAY DIFFRACTION
  28. Spatio-temporal transcriptome of the human brain BioProject

    ID: PRJNA134455

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: cated in brain growth and cognitive function, and NLGN4X, a candidate gene for autism spectrum disorders. We found that the developing transcriptome is organized into functionally distinct large-scale networks of co-regulated transcripts. We also observed marked differences in expression trajectories of genes associated with specific neurodevelopmental processes, neural cell types, neurotransmitter systems, autism spectrum disorders, and schizophrenia. Association analysis of the SNP genotypes and transcriptome revealed potential polymorphic regulators of gene expression in different regions across development. This study provides a comprehensive, publicly available dataset on the spatiotemporal human brain transcriptome and new insights into the transcriptional foundations of brain development and evolution. This submission represents the transcriptome component of the study. Submitter did not submit SNP and CNV data due to privacy issue of patients....
  29. Spatio-temporal transcriptome of the human brain OmicsDI

    ID: E-GEOD-25219

    Date Released: 05-02-2014

    Description: cated in brain growth and cognitive function, and NLGN4X, a candidate gene for autism spectrum disorders. We found that the developing transcriptome is organized into functionally distinct large-scale networks of co-regulated transcripts. We also observed marked differences in expression trajectories of genes associated with specific neurodevelopmental processes, neural cell types, neurotransmitter systems, autism spectrum disorders, and schizophrenia. Association analysis of the SNP genotypes and transcriptome revealed potential polymorphic regulators of gene expression in different regions across development. This study provides a comprehensive, publicly available dataset on the spatiotemporal human brain transcriptome and new insights into the transcriptional foundations of brain development and evolution. This submission represents the transcriptome component of the study. Submitter did not submit SNP and CNV data due to privacy issue of patients....

  30. Deep Mutational Scanning of HIV tat and rev in a non-overlapped context BioProject

    ID: PRJEB16306

    Keywords: Other

    Access Type: download

    dataset.description: The data here was used to generate Figures 3 and 4 and 7 and might be of general use for people interested in deep mutational scanning, looking for signatures of epistasis in rev or tat, or reanalyzing and mining the data. FAQ: Why do the ends of each amplicon have such variation? In order to increase diversity across the flowcell, I pooled standard primers with N, NN, and NNN extensions to throw amplicons out of phase. When aligning you should trim the ends or ignore them. This means that the overlap between PE's can vary by 3 nt. Why are the filenames not easy to deal with? The filenames are tied to separate MiSeq runs. I hope to clean up the nomenclature and update this entry in the future while preserving the run information. You can get a sense of t...

Displaying 30 of 30 results for "NLGN4X"