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Displaying 20 of 239 results for "GET4"
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  1. USPTO_patents_in_CEE_1981-2010 Dryad

    DateIssued: 02-23-2017

    Description: This file contains publicly available and cleaned data of USPTO patents with at least one inventor from the Czech Republic, Hungary, Poland and Slovak...

  2. ReducedRepresentation : Focussing reduced representation CpG sequencing through judicious restriction enzyme choice BioProject

    ID: PRJEB12622

    Keywords: Other

    Access Type: download

    dataset.description: ed, but unbiased, methylome coverage. Since only ~20% of CpGs are dynamically regulated, we characterised the CpG and genomic context surrounding all suitable restriction enzyme sites to identify those that were located in regions rich in dynamically methylated CpGs. The...
  3. Membrane protein shaving with thermolysin can be used to evaluate topology predictors OmicsDI

    ID: GPM11210015438

    Date Released:

    Description: om PASSEL: [[https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?datasetPassword=YV8455s&identifier=PASS00193 PASS00193]]. Data file: 110512_MB_LepB_65_10.mzXML. Published as p...

  4. GET4_TAEGU UniProt:Swiss-Prot

    ID: B5KFI0

    Description: Golgi to ER traffic protein 4 homolog

  5. DNA methylation analysis of prostate cancer cell lines and tissues using Next Generation Sequencing BioProject

    ID: PRJNA141775

    Keywords: Epigenomics

    Access Type: download

    dataset.description: cer tissues were comparable. While approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues, promoter CGI methylation gradually increased from ~12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues. We found distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly on the CGIs, flanking regions and on CGI sparse promoters. Among the 6,691 methylated promoters in prostate tissues, 2481 differentially methylated regions (DMRs) are cancer specific and several previously studied targets were among them. A novel cancer specific DMR in WFDC2 promoter showed 77% methylation in cancer (17/22), 100% methylation in transform...
  6. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [array] ArrayExpress

    ID: E-GEOD-60744

    Description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized oligonucleotide microarray analysis to charaterize the transcriptome of non-transformed 2xSCS70 and 2xSCS2F10 cells relative to their source tissues. Total RNA from ICC progenitor cell lines and their source tissue (gastric tunica muscularis from C57BL/6J mice (source of 2xSCS2F10 cells) and H-2Kb-tsA58 mice (source of 2xSCS70 cells) was isolated. Oligonucleotide micorarray studies were performed using 2-3 Affymetrix Mouse Genome 430.2 GeneChips per sample....

  7. WFUBMC Primate Center X-96-23: Cynomolgus macaque response to hormone replacement therapy OmicsDI

    ID: E-GEOD-27228

    Date Released: 01-27-2013

    Description: X-96-23 had 5 groups. Each of 4 groups had a different treatment type and there was also a control group. A total of 16 samples was sent for micro array analysis...

  8. MPC_ Deep Sequencing Reveals Distinct Pattern of DNA Methylation in Prostate Cancer BioProject

    ID: PRJNA188782

    Keywords: Phenotype or Genotype

    Access Type: download

    dataset.description: cent and cancer tissues were comparable. Promoter CGI methylation gradually increased from -12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues and approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues. We observed distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly... (for more see dbGaP study page.)...
  9. MPC_ Deep Sequencing Reveals Distinct Pattern of DNA Methylation in Prostate Cancer BioProject

    ID: PRJNA188512

    Access Type: download

    dataset.description: cent and cancer tissues were comparable. Promoter CGI methylation gradually increased from -12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues and approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues. We observed distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly... (for more see dbGaP study page.)...
  10. Solution structure of the Get5 carboxyl domain from S. cerevisiae PDB

    ID: PDB:2LNZ

    Description: Ubiquitin-like protein MDY2

  11. Crystal structure of the Get5 carboxyl domain from S. cerevisiae PDB

    ID: PDB:3VEJ

    Description: Ubiquitin-like protein MDY2

  12. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [RNA-seq] ArrayExpress

    ID: E-GEOD-60853

    Description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized RNA-sequencing to complement the companion microarray study in non-transformed 2xSCS70 and 2xSCS2F10 cells. Libraries were made from total RNA isolated from ICC progenitor cell lines using the Illumina TruSeq mRNA Sample Preparation Kit v2 and sequenced on the Illumina HiSeq 2000 platform....

  13. Solution structure of the Get5 carboxyl domain from A. fumigatus PDB

    ID: PDB:2LO0

    Description: Uncharacterized protein

  14. CCDC 1421943: Experimental Crystal Structure Determination CCDC

    ID: doi:10.5517/CC1JQN41

    Release Date: 05-13-2016

    dataset.creators: Cee, Victor J.
  15. ENm001_AR Dryad

    DateIssued: 01-27-2012

    Description: om the UCSC Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) Pieces of the alignment corresponding to simple repeats, low complexity regions, members of the Alu family, and RNA elements that diverged less than 25% and L1 elements that diverged less than 20% from the reference Rep...

  16. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [array] BioProject

    ID: PRJNA259413

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized oligonucleotide microarray analysis to charaterize the transcriptome of non-transformed 2xSCS70 and 2xSCS2F10 cells relative to their source tissues. Overall design: Total RNA from ICC progenitor cell lines and their source tissue (gastric tunica muscularis from C57BL/6J mice (source of 2xSCS2F10 cells) and H-2Kb-tsA58 mice (source of 2xSCS70 cells) was isolated. Oligonucleotide micorarray studies were performed using 2-3 Affymetrix Mouse Genome 430.2 GeneChips per sample....
  17. co-crystal structure of Pim1 with compound 3 PDB

    ID: PDB:4RPV

    Description: Serine/threonine-protein kinase pim-1 (E.C.2.7.11.1)

  18. Crystal structure of the VEGFR2 kinase domain in complex with a pyridyl-pyrimidine benzimidazole inhibitor PDB

    ID: PDB:3EWH

    Description: vascular endothelial growth factor receptor 2 (E.C.2.7.10.1)

  19. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [RNA-seq] BioProject

    ID: PRJNA259669

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized RNA-sequencing to complement the companion microarray study in non-transformed 2xSCS70 and 2xSCS2F10 cells. Overall design: Libraries were made from total RNA isolated from ICC progenitor cell lines using the Illumina TruSeq mRNA Sample Preparation Kit v2 and sequenced on the Illumina HiSeq 2000 platform....
  20. Crystal structure of benzamide 9 bound to AuroraA PDB

    ID: PDB:3O50

    Description: cDNA FLJ58295, highly similar to Serine/threonine-protein kinase 6 (E.C.2.7.11.1)


Displaying 20 of 239 results for "GET4"