GET4 | bioCADDIE Data Discovery Index
Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Displaying 50 of 239 results for "GET4"
i
  1. Crystal structure of an ATP-bound Get3-Get4-Get5 complex from S.cerevisiae PDB

    ID: PDB:4PWX

    Description: ATPase GET3 (E.C.3.6.-.-), Golgi to ER traffic protein 4, Ubiquitin-like

  2. Crystal structure of C. therm. Get4 PDB

    ID: PDB:3LPZ

    Description: Get4 (YOR164C homolog)

  3. CRYSTAL STRUCTURE OF S. CEREVISIAE GET4-GET5 COMPLEX PDB

    ID: PDB:2WPV

    Description: UPF0363 PROTEIN YOR164C, UBIQUITIN-LIKE PROTEIN MDY2

  4. Appendix A. Plot layout for the Climate Extremes Experiment (CEE). Figshare

    ID: doi:10.6084/M9.FIGSHARE.3560343

    Release Date: 09-30-2016

    Description: Plot layout for the Climate Extremes Experiment (CEE).

  5. Appendix A. Plot layout for the Climate Extremes Experiment (CEE). Figshare

    ID: doi:10.6084/M9.FIGSHARE.3560343.V1

    Release Date: 09-30-2016

    Description: Plot layout for the Climate Extremes Experiment (CEE).

  6. WFUBMC Primate Center X-96-23: Cynomolgus macaque response to hormone replacement therapy BioProject

    ID: PRJNA137499

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: X-96-23 had 5 groups. Each of 4 groups had a different treatment type and there was also a control group. A total of 16 samples was sent for micro array analysis...
  7. 2.8 A crystal structure of a Get3-Get4-Get5 intermediate complex from S.cerevisiae PDB

    ID: PDB:5BW8

    Description: ATPase GET3 (E.C.3.6.-.-), Golgi to ER traffic protein 4, Ubiquitin-like

  8. WFUBMC Primate Center X-96-23: Cynomolgus macaque response to hormone replacement therapy ArrayExpress

    ID: E-GEOD-27228

    Description: X-96-23 had 5 groups. Each of 4 groups had a different treatment type and there was also a control group. A total of 16 samples was sent for micro array analysis...

  9. Crystal structure of S. cerevisiae Get4 in complex with an N-terminal fragment of Get5 PDB

    ID: PDB:3LKU

    Description: UPF0363 protein YOR164C, Ubiquitin-like protein MDY2

  10. 6.0 A Crystal structure of a Get3-Get4-Get5 intermediate complex from S.cerevisiae PDB

    ID: PDB:5BWK

    Description: ATPase GET3 (E.C.3.6.-.-), Golgi to ER traffic protein 4, Ubiquitin-like

  11. Women’s Health Initiative Sight Exam (WHISE) BioProject

    ID: PRJNA257233

    Keywords: Phenotype or Genotype

    Access Type: download

    dataset.description: udy page http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000200 WHI Cohort. Individual level phenotype data and molecular data for all WHI top-level study and substudies are available by requesting Authorized Access to the WHI Cohort study http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000200. Wom...
  12. The novel SUV4-20 inhibitor A-196 verifies a role for epigenetics in genomic integrity PDB

    ID: PDB:5CPR

    Description: Histone-lysine N-methyltransferase SUV420H1 (E.C.2.1.1.43)

  13. DNA methylation analysis of prostate cancer cell lines and tissues using Next Generation Sequencing ArrayExpress

    ID: E-GEOD-27618

    Description: cer tissues were comparable. While approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues, promoter CGI methylation gradually increased from ~12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues. We found distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly on the CGIs, flanking regions and on CGI sparse promoters. Among the 6,691 methylated promoters in prostate tissues, 2481 differentially methylated regions (DMRs) are cancer specific and several previously studied targets were among them. A novel cancer specific DMR in WFDC2 promoter showed 77% methylation in cancer ...

  14. Crystal structure of the Sgt2 TPR domain from Aspergillus fumigatus PDB

    ID: PDB:3SZ7

    Description: Hsc70 cochaperone (SGT) (E.C.3.1.3.16)

  15. Methylation profiling in pediatric medulloblastoma BioProject

    ID: PRJNA95829

    Keywords: Epigenomics

    Access Type: download

    dataset.description: sitively digested DNA (Cy5) from the same sample. CGI methylation in 20 pediatric medulloblastomas (M) and normal cerebellum (Cb, pool of five unaffected donors, age 25–33 years)...
  16. GET4_BOVIN UniProt:Swiss-Prot

    ID: Q0P5I8

    Description: Golgi to ER traffic protein 4 homolog

  17. GET4A_XENLA UniProt:Swiss-Prot

    ID: Q6NRL4

    Description: Golgi to ER traffic protein 4 homolog

  18. GET4_XENTR UniProt:Swiss-Prot

    ID: A4QNE0

    Description: Golgi to ER traffic protein 4 homolog

  19. GET4B_XENLA UniProt:Swiss-Prot

    ID: Q6GLK9

    Description: Golgi to ER traffic protein 4 homolog

  20. Methylation profiling in pediatric medulloblastoma ArrayExpress

    ID: E-GEOD-4857

    Description: sitively digested DNA (Cy5) from the same sample. CGI methylation in 20 pediatric medulloblastomas (M) and normal cerebellum (Cb, pool of five unaffected donors, age 25–33 years)...

  21. USPTO_patents_in_CEE_1981-2010 Dryad

    DateIssued: 02-23-2017

    Description: This file contains publicly available and cleaned data of USPTO patents with at least one inventor from the Czech Republic, Hungary, Poland and Slovak...

  22. ReducedRepresentation : Focussing reduced representation CpG sequencing through judicious restriction enzyme choice BioProject

    ID: PRJEB12622

    Keywords: Other

    Access Type: download

    dataset.description: ed, but unbiased, methylome coverage. Since only ~20% of CpGs are dynamically regulated, we characterised the CpG and genomic context surrounding all suitable restriction enzyme sites to identify those that were located in regions rich in dynamically methylated CpGs. The...
  23. Membrane protein shaving with thermolysin can be used to evaluate topology predictors OmicsDI

    ID: GPM11210015438

    Date Released:

    Description: om PASSEL: [[https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?datasetPassword=YV8455s&identifier=PASS00193 PASS00193]]. Data file: 110512_MB_LepB_65_10.mzXML. Published as p...

  24. GET4_TAEGU UniProt:Swiss-Prot

    ID: B5KFI0

    Description: Golgi to ER traffic protein 4 homolog

  25. DNA methylation analysis of prostate cancer cell lines and tissues using Next Generation Sequencing BioProject

    ID: PRJNA141775

    Keywords: Epigenomics

    Access Type: download

    dataset.description: cer tissues were comparable. While approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues, promoter CGI methylation gradually increased from ~12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues. We found distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly on the CGIs, flanking regions and on CGI sparse promoters. Among the 6,691 methylated promoters in prostate tissues, 2481 differentially methylated regions (DMRs) are cancer specific and several previously studied targets were among them. A novel cancer specific DMR in WFDC2 promoter showed 77% methylation in cancer (17/22), 100% methylation in transform...
  26. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [array] ArrayExpress

    ID: E-GEOD-60744

    Description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized oligonucleotide microarray analysis to charaterize the transcriptome of non-transformed 2xSCS70 and 2xSCS2F10 cells relative to their source tissues. Total RNA from ICC progenitor cell lines and their source tissue (gastric tunica muscularis from C57BL/6J mice (source of 2xSCS2F10 cells) and H-2Kb-tsA58 mice (source of 2xSCS70 cells) was isolated. Oligonucleotide micorarray studies were performed using 2-3 Affymetrix Mouse Genome 430.2 GeneChips per sample....

  27. WFUBMC Primate Center X-96-23: Cynomolgus macaque response to hormone replacement therapy OmicsDI

    ID: E-GEOD-27228

    Date Released: 01-27-2013

    Description: X-96-23 had 5 groups. Each of 4 groups had a different treatment type and there was also a control group. A total of 16 samples was sent for micro array analysis...

  28. MPC_ Deep Sequencing Reveals Distinct Pattern of DNA Methylation in Prostate Cancer BioProject

    ID: PRJNA188782

    Keywords: Phenotype or Genotype

    Access Type: download

    dataset.description: cent and cancer tissues were comparable. Promoter CGI methylation gradually increased from -12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues and approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues. We observed distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly... (for more see dbGaP study page.)...
  29. MPC_ Deep Sequencing Reveals Distinct Pattern of DNA Methylation in Prostate Cancer BioProject

    ID: PRJNA188512

    Access Type: download

    dataset.description: cent and cancer tissues were comparable. Promoter CGI methylation gradually increased from -12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues and approximately 20% of all CpG islands (CGIs) (68,508) were methylated in tissues. We observed distinct patterns in promoter methylation around transcription start sites, where methylation occurred directly... (for more see dbGaP study page.)...
  30. Solution structure of the Get5 carboxyl domain from S. cerevisiae PDB

    ID: PDB:2LNZ

    Description: Ubiquitin-like protein MDY2

  31. Crystal structure of the Get5 carboxyl domain from S. cerevisiae PDB

    ID: PDB:3VEJ

    Description: Ubiquitin-like protein MDY2

  32. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [RNA-seq] ArrayExpress

    ID: E-GEOD-60853

    Description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized RNA-sequencing to complement the companion microarray study in non-transformed 2xSCS70 and 2xSCS2F10 cells. Libraries were made from total RNA isolated from ICC progenitor cell lines using the Illumina TruSeq mRNA Sample Preparation Kit v2 and sequenced on the Illumina HiSeq 2000 platform....

  33. Solution structure of the Get5 carboxyl domain from A. fumigatus PDB

    ID: PDB:2LO0

    Description: Uncharacterized protein

  34. CCDC 1421943: Experimental Crystal Structure Determination CCDC

    ID: doi:10.5517/CC1JQN41

    Release Date: 05-13-2016

    dataset.creators: Cee, Victor J.
  35. ENm001_AR Dryad

    DateIssued: 01-27-2012

    Description: om the UCSC Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) Pieces of the alignment corresponding to simple repeats, low complexity regions, members of the Alu family, and RNA elements that diverged less than 25% and L1 elements that diverged less than 20% from the reference Rep...

  36. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [array] BioProject

    ID: PRJNA259413

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized oligonucleotide microarray analysis to charaterize the transcriptome of non-transformed 2xSCS70 and 2xSCS2F10 cells relative to their source tissues. Overall design: Total RNA from ICC progenitor cell lines and their source tissue (gastric tunica muscularis from C57BL/6J mice (source of 2xSCS2F10 cells) and H-2Kb-tsA58 mice (source of 2xSCS70 cells) was isolated. Oligonucleotide micorarray studies were performed using 2-3 Affymetrix Mouse Genome 430.2 GeneChips per sample....
  37. co-crystal structure of Pim1 with compound 3 PDB

    ID: PDB:4RPV

    Description: Serine/threonine-protein kinase pim-1 (E.C.2.7.11.1)

  38. Crystal structure of the VEGFR2 kinase domain in complex with a pyridyl-pyrimidine benzimidazole inhibitor PDB

    ID: PDB:3EWH

    Description: vascular endothelial growth factor receptor 2 (E.C.2.7.10.1)

  39. Transcriptome analysis of two clonally-derived ICC progenitor cell lines [RNA-seq] BioProject

    ID: PRJNA259669

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: CPM containing 5% cell-free chick embryo extract (CEE; Accurate Chemical). Long-term culturing of both cell lines was associated with further decline in Kit expression while expression of Ano1 and other markers of ICC precursors was maintained. Following spontaneous transformation, both 2xSCS70 and 2xSCS2F10 cells grafted into nude mice gave rise to tumors containing Kit(+)cells and otherwise resembling gastrointestinal stromal tumors (GIST), which originate from the ICC lineage (Bardsley et al., Gastroenterology 2010;139:942-952). This study utilized RNA-sequencing to complement the companion microarray study in non-transformed 2xSCS70 and 2xSCS2F10 cells. Overall design: Libraries were made from total RNA isolated from ICC progenitor cell lines using the Illumina TruSeq mRNA Sample Preparation Kit v2 and sequenced on the Illumina HiSeq 2000 platform....
  40. Crystal structure of benzamide 9 bound to AuroraA PDB

    ID: PDB:3O50

    Description: cDNA FLJ58295, highly similar to Serine/threonine-protein kinase 6 (E.C.2.7.11.1)

  41. Crystal structure of human Pim-1 kinase in complex with an aminooxadiazole-indole inhibitor. PDB

    ID: PDB:4TY1

    Description: Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.11.1)

  42. Evolution of a highly Selective and Potent 2-(Pyridin-2-yl)-1,3,5-triazine Tie-2 Kinase Inhibitor PDB

    ID: PDB:2P4I

    Description: Tie-2 Kinase

    dataset.creators: Bellon, S.
  43. Synthesis, Structural Analysis, and SAR Studies of Triazine Derivatives as Potent, Selective Tie-2 Inhibitors PDB

    ID: PDB:2OO8

    Description: Tie-2

    dataset.creators: Bellon, S.
  44. Crystal structure of human Pim-1 kinase in complex with a thiadiazolamine-indole inhibitor. PDB

    ID: PDB:4WT6

    Description: Serine/threonine protein kinase pim-1 (E.C.2.7.11.1)

  45. Crystal structure of human Pim-1 kinase in complex with an azaspiro pyrazinyl-indazole inhibitor. PDB

    ID: PDB:4WRS

    Description: Serine/threonine-protein kinase pim-1 (E.C.2.7.11.1)

  46. Structure of AuroraA with pyridyl-pyrimidine urea inhibitor PDB

    ID: PDB:3EFW

    Description: Serine/threonine-protein kinase 6 (E.C.2.7.11.1)

  47. tructure of human JNK3 complexed with N-(3-methyl-4-(3-(2-(methylamino)pyrimidin-4-yl)pyridin-2-yloxy)naphthalen-1-yl)-1H-benzo[d]imidazol-2-amine... PDB

    ID: PDB:3DA6

    Description: Mitogen-activated protein kinase 10 (E.C.2.7.11.24)

  48. Crystal structure of human Pim-1 kinase in complex with a macrocyclic quinoxaline-pyrrolodihydropiperidinone inhibitor PDB

    ID: PDB:5EOL

    Description: Serine/threonine-protein kinase pim-1 (E.C.2.7.11.1)

  49. Crystal structure of anthranilamide 10 bound to AuroraA PDB

    ID: PDB:3O51

    Description: cDNA FLJ58295, highly similar to Serine/threonine-protein kinase 6 (E.C.2.7.11.1)

  50. Crystal structure of the VEGFR2 kinase domain in complex with a pyridinyl-triazine inhibitor PDB

    ID: PDB:2P2H

    Description: Vascular endothelial growth factor receptor 2 (E.C.2.7.10.1)


Displaying 50 of 239 results for "GET4"