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  1. FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis ArrayExpress

    ID: E-GEOD-46902

    Description: Fanconi Anemia (FA) is a rare genetic disorder characterized by an increased susceptibility t...

  2. FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis BioProject

    ID: PRJNA202990

    Keywords: Epigenomics

    Access Type: download

  3. Structure of the FANCI-FANCD2 complex PDB

    ID: PDB:3S4W

    Description: Fanconi anemia group I protein homolog, Fanconi anemia ...

  4. Fanconi anemia proteins interact with CtBP1 and modulate the expression of the Wnt antagonist Dickkopf-1 ArrayExpress

    ID: E-GEOD-43330

    Description: Fanconi anemia (FA) is a genetic disorder characterized by congenital abnormalities, bone mar...

  5. Fanconi anemia proteins interact with CtBP1 and modulate the expression of the Wnt antagonist Dickkopf-1 BioProject

    ID: PRJNA185443

    Keywords: Transcriptome or Gene expression

    Access Type: download

  6. Gene expression profiles of murine Runx1;Runx3 double deficient cKit+Sca1+Lin- hematopoietic stem/progenitor cells ArrayExpress

    ID: E-GEOD-51107

    Description: uman inherited bone marrow failure syndromes like Fanconi anemia (FA), caused by defective DNA repair. Indeed, Runx1;Runx3 DKO cells showed mitomycin C hypersensitivity, due to impairment of monoubiquitinated-FANCD2 recruitment to DNA damage foci, although FANCD2 monoubiquitination in the FA pathway was unaffected. RUNX1 and RUNX3 interact with FANCD2 independent of CBFβ, suggesting non-transcriptional role for RUNX in DNA repair. These findings suggest that RUNX dysfunction causes DNA repair defec...

  7. Tailoring heated intra-peritoneal Mitomycin C for peritoneal metastases originating from colorectal carcinoma – A translational approach to improve... BioProject

    ID: PRJNA217767

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: eparate assays. Thirty-seven genes related to the FA-BRCA pathway, ATM-ATR pathway and enzymatic activation of MMC were correlated on expression array platform to MMC sensitivity. Low sensitivity correlated with a decrease in BLM (p=0.01) and BRCA2 (p=0.02) on mRNA expression level. Both genes are part of the Fanconi Anaemia-BRCA (FA-BRCA) pathway and therefore, functionality of the FA-BRCA pathway in cell lines was determined using chromosomal breakage assay and Western Blot for key protein FANCD2. However...
  8. BRCA1 functions independently of homologous recombination in DNA interstrand crosslink repair ArrayExpress

    ID: E-GEOD-35698

    Description: exacerbates genomic instability in cells lacking FANCD2, a mediator of the Fanconi Anemia pathway for ICL repair. Brca1 therefore has two separate roles in ICL repair, whereas FANCD2 provides a key activity that can not be bypassed by ablation of 53BP1 or Ku. B cells were stimulated to undergo class switch recombination in vitro. Chromatin from B cells was harvested 72 hours post-stimulation and used for RPA ChIP to study the extent of resection of DNA DSBs....

  9. Oxymetholone therapy of Fanconi anemia suppresses osteopontin transcription and induces hematopoietic stem cell cycling ArrayExpress

    ID: E-GEOD-58724

    Description: We used Fancd2-/- mice to understand its mechanism of action. Transcriptome analysis of cKit+ Sca1+ Lin- (KSL) cells discovered that only f...

  10. Gene expression profiles of murine Runx1;Runx3 double deficient cKit+Sca1+Lin- hematopoietic stem/progenitor cells BioProject

    ID: PRJNA221199

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: uman inherited bone marrow failure syndromes like Fanconi anemia (FA), caused by defective DNA repair. Indeed, Runx1;Runx3 DKO cells showed mitomycin C hypersensitivity, due to impairment of monoubiquitinated-FANCD2 recruitment to DNA damage foci, although FANCD2 monoubiquitination in the FA pathway was unaffected. RUNX1 and RUNX3 interact with FANCD2 independent of CBFβ, suggesting non-transcriptional role for RUNX in DNA repair. These findings suggest that RUNX dysfunction causes DNA repair defec...
  11. BRCA1 functions independently of homologous recombination in DNA interstrand crosslink repair BioProject

    ID: PRJNA152035

    Keywords: Epigenomics

    Access Type: download

    dataset.description: exacerbates genomic instability in cells lacking FANCD2, a mediator of the Fanconi Anemia pathway for ICL repair. Brca1 therefore has two separate roles in ICL repair, whereas FANCD2 provides a key activity that can not be bypassed by ablation of 53BP1 or Ku. Overall design: B cells were stimulated to undergo class switch recombination in vitro. Chromatin from B cells was harvested 72 hours post-stimulation and used for RPA ChIP to study the extent of resection of DNA DSBs....
  12. Molecular Profiling of Metastatic Prostate Carcinoma Reveals Substantial Inter-individual and Limited Intra-individual Diversity: Implications for Pre... ArrayExpress

    ID: E-GEOD-74685

    Description: rsely related to proliferation, the expression of Fanconi Anemia complex genes was strongly associated with increased cell cycle progression. Inhibition of FANCA, FANCC, FANCD2 and BRCA2 expression reduced prostate cancer growth. The limited molecular diversity across metastases may result from bottlenecks imposed by the dissemination process, limited evolutionary time between metastatic seeding and tumor sampling, intermixing of tumor clones, and selection resulting from treatment pressures. Though exceptions exist, evaluating a single metastasis provides a reasonable assessment of the key molecular processes that occur throughout the spectrum of disseminated tumors within an individual, and may be used for selecting treatments ba...

  13. Gene expression profiling reveals activation of the FA/BRCA pathway in advanced squamous cervical cancer with intrinsic resistance and therapy failure ArrayExpress

    ID: E-GEOD-56363

    Description: g confirmed increased expression of BRCA1, BRIP1, FANCD2 and RAD51 in non-responsive compared with responsive advanced squamous cervical cancer, both in the initial set of 21 cervical cancer samples and the second set of 24 samples. Twenty-one patients with locally advanced squamous cell carcinoma (FIGO stage IIB-IIIB) were enrolled in the genomics study. A tissue fragment from a primary biopsy specimen was harvested from each patient prior to the therapy. Tissue samples were stored in liquid nitrogen until use for RNA extraction. One-color microarray experiment was performed to measure differences in gene expression between cervical cancer samples with 6-month complete response (12 patients ) and non-complete response (9 patients). Complet response group was considered as reference....

  14. Oxymetholone therapy of Fanconi anemia suppresses osteopontin transcription and induces hematopoietic stem cell cycling BioProject

    ID: PRJNA253277

    Keywords: Transcriptome or Gene expression

    Access Type: download

  15. Gene expression profiling reveals activation of the FA/BRCA pathway in advanced squamous cervical cancer with intrinsic resistance and therapy failure BioProject

    ID: PRJNA243049

    Keywords: Transcriptome or Gene expression

    Access Type: download

  16. FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis OmicsDI

    ID: E-GEOD-46902

    Date Released: 07-17-2013

    Description: Fanconi Anemia (FA) is a rare genetic disorder characterized by an increased susceptibility t...

  17. FACOS_HUMAN UniProt:Swiss-Prot

    ID: Q96PS1

    Description: FANCD2 opposite strand protein

  18. FACOS_BOVIN UniProt:Swiss-Prot

    ID: Q32KZ5

    Description: FANCD2 opposite strand protein

  19. Fatty acid composition of developing tree peony (Paeonia section Moutan DC.) seeds and transcriptome analysis during seed development ArrayExpress

    ID: E-MTAB-3377

    Description: Tree peony (Paeonia ostii section Moutan DC.) is known for its excellent ornamental and medicinal values. In 2011, seeds from P. ostii have been ident...

  20. Data from: Genome-wide association study in Arabidopsis thaliana of natural variation in seed oil melting point, a widespread adaptive trait in plants Dryad

    DateIssued: 03-14-2016

    Description: Seed oil melting point is an adaptive, quantitative trait determined by the relative proportions of the fatty acids that compose the oil. Micro- and m...

  21. Fatty acid composition of developing tree peony (Paeonia section Moutan DC.) seeds and transcriptome analysis during seed development BioProject

    ID: PRJEB8704

    Keywords: Other

    Access Type: download

  22. Oxymetholone therapy of Fanconi anemia suppresses osteopontin transcription and induces hematopoietic stem cell cycling OmicsDI

    ID: E-GEOD-58724

    Date Released: 03-12-2015

    Description: We used Fancd2-/- mice to understand its mechanism of action. Transcriptome analysis of cKit+ Sca1+ Lin- (KSL) cells discovered that only f...

  23. Gene expression profiles of murine Runx1;Runx3 double deficient cKit+Sca1+Lin- hematopoietic stem/progenitor cells OmicsDI

    ID: E-GEOD-51107

    Date Released: 09-01-2014

    Description: uman inherited bone marrow failure syndromes like Fanconi anemia (FA), caused by defective DNA repair. Indeed, Runx1;Runx3 DKO cells showed mitomycin C hypersensitivity, due to impairment of monoubiquitinated-FANCD2 recruitment to DNA damage foci, although FANCD2 monoubiquitination in the FA pathway was unaffected. RUNX1 and RUNX3 interact with FANCD2 independent of CBFβ, suggesting non-transcriptional role for RUNX in DNA repair. These findings suggest that RUNX dysfunction causes DNA repair defec...

  24. Imatinib therapy of chronic myeloid leukemia restores the expression levels of key genes for DNA damage and cell cycle progression ArrayExpress

    ID: E-GEOD-33075

    Description: ssion of the following genes was analyzed: POLE2, FANCD2, PTEN, FOXO3, and ABCB7. The specific primers were designed with Primer Express 3.0 software (Applied Biosystems) and tested for specificity using NCBI's BLAST software. Gene expression was achieved using relative quantitative real-time RT-PCR and the SYBR® Green I. Expression was quantified relative to GAPDH expression by the application of the Pfaffl analysis method....

  25. FACD2_RAT UniProt:Swiss-Prot

    ID: Q6IV68

    Description: Fanconi anemia group D2 protein homolog Interaction with FANCE Interaction...

  26. Imatinib therapy of chronic myeloid leukemia restores the expression levels of key genes for DNA damage and cell cycle progression BioProject

    ID: PRJNA149487

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ssion of the following genes was analyzed: POLE2, FANCD2, PTEN, FOXO3, and ABCB7. The specific primers were designed with Primer Express 3.0 software (Applied Biosystems) and tested for specificity using NCBI's BLAST software. Gene expression was achieved using relative quantitative real-time RT-PCR and the SYBR® Green I. Expression was quantified relative to GAPDH expression by the application of the Pfaffl analysis method....
  27. BRCA1 functions independently of homologous recombination in DNA interstrand crosslink repair OmicsDI

    ID: E-GEOD-35698

    Date Released: 10-18-2012

    Description: exacerbates genomic instability in cells lacking FANCD2, a mediator of the Fanconi Anemia pathway for ICL repair. Brca1 therefore has two separate roles in ICL repair, whereas FANCD2 provides a key activity that can not be bypassed by ablation of 53BP1 or Ku. B cells were stimulated to undergo class switch recombination in vitro. Chromatin from B cells was harvested 72 hours post-stimulation and used for RPA ChIP to study the extent of resection of DNA DSBs....

  28. MEN1_BOVIN UniProt:Swiss-Prot

    ID: Q0P5I0

    Description: Menin Interaction with FANCD2 Phosphoserine Phosphoserine Phosphothreonine

  29. FAD-LAD-rescaled-all Dryad

    DateIssued: 12-09-2016

    Description: tab-delimited tables of first and last appearance dates across 100 CONOP solutions for all taxa

  30. FAD Dryad

    DateIssued: 02-23-2016

    Description: ted as text file. As described in the papert the "FAD" corresponds to the earliest representative of the lineage while "LAD" refers to the first appearance of the tip taxon associated with that respective branch. All numeric values refer to millions of years before present (Myr). Tip taxa corresp...

  31. FAD Dryad

    DateIssued: 02-23-2016

    Description: ted as text file. As described in the papert the "FAD" corresponds to the earliest representative of the lineage while "LAD" refers to the first appearance of the tip taxon associated with that respective branch. All numeric values refer to millions of years before present (Myr). Tip taxa corresp...

  32. Fanconi anemia proteins interact with CtBP1 and modulate the expression of the Wnt antagonist Dickkopf-1 OmicsDI

    ID: E-GEOD-43330

    Date Released: 04-22-2013

    Description: Fanconi anemia (FA) is a genetic disorder characterized by congenital abnormalities, bone mar...

  33. FANCG_HUMAN UniProt:Swiss-Prot

    ID: O15287

    Description: Fanconi anemia group G protein TPR 1 TPR 2 TPR 3 TPR 4 Phosphoserine In FANCG; associated wit...

  34. Phylogenetic analysis of FAD-dependent oxidase (FADOX) gene candidates from twenty BIA-accumulating plant species. Rooted tree. Dryad

    DateIssued: 09-21-2015

  35. BRCA2_RAT UniProt:Swiss-Prot

    ID: O35923

    Description: with PALB2 Interaction with NPM1 Interaction with FANCD2 Interaction with SHFM1/DSS1 Nuclear export signal; masked by interaction with SHFM1/DSS1 Phosphoserine Phosphoserine Phosphoserine Phosphoserine Phosphoserine; by CDK1 and CDK2 Phosphoserine...

  36. FAD-LAD-rescaled-ptero Dryad

    DateIssued: 12-09-2016

    Description: tab-delimited tables of first and last appearance dates across 100 CONOP solutions for just the pterocephaliids

  37. Gene expression profile of sporadic and PSEN1 early-onset Alzheimer’s Disease BioProject

    ID: PRJNA170842

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: turn can be divided in monogenic or familial AD (FAD) and sporadic early-onset AD (EOAD). Mutations in PSEN1, PSEN2 and APP genes have been linked with FAD. The aim of our study was to describe the brain whole-genome RNA expression profile of the posterior cingulate area in EOAD and FAD c...
  38. Phylogenetic analysis of FAD-dependent oxidase (FADOX) gene candidates from twenty BIA-accumulating plant species. Dryad

    DateIssued: 09-21-2015

  39. Crystal structure of human Fanconi-associated nuclease 1 PDB

    ID: PDB:4RY3

    Description: Fanconi-associated nuclease 1 (E.C.3.1.21.-, 3.1.4.1)

  40. Structure of FANCI PDB

    ID: PDB:3S51

    Description: Fanconi anemia group I protein homolog

  41. Gene expression profile of sporadic and PSEN1 early-onset Alzheimer’s Disease ArrayExpress

    ID: E-GEOD-39420

    Description: turn can be divided in monogenic or familial AD (FAD) and sporadic early-onset AD (EOAD). Mutations in PSEN1, PSEN2 and APP genes have been linked with FAD. The aim of our study was to describe the brain whole-genome RNA expression profile of the posterior cingulate area in EOAD and FAD c...

  42. A Nuclease DNA complex PDB

    ID: PDB:4REA

    Description: PROTEIN/DNA Complex

    dataset.keywords: FANCD2
  43. Structure of a Y DNA-FANCI complex PDB

    ID: PDB:3S4Z

    Description: dna repair 1

    primaryPublication.title: Structure of the FANCI-FANCD2 complex: insights into the Fanconi anemia DNA repair pathway.
  44. Gene expression profile of sporadic and PSEN1 early-onset Alzheimer’s Disease OmicsDI

    ID: E-GEOD-39420

    Date Released: 01-27-2015

    Description: turn can be divided in monogenic or familial AD (FAD) and sporadic early-onset AD (EOAD). Mutations in PSEN1, PSEN2 and APP genes have been linked with FAD. The aim of our study was to describe the brain whole-genome RNA expression profile of the posterior cingulate area in EOAD and FAD c...

  45. Azrou-n-Fad region, Algeria, 1952, Army Map Service (AMS) NF 32-5 (Raster Image) Dataverse

    Description: 1:250,000 AMS Series sheet map entitled: Azrou-n-Fad. Compilation date: 1952. Printed in: 1963. Covers portions of Azrou-n-Fad region, Algeria. Map quadrangle number: NF 32-5. Edition statement: Ed. 1 - AMS. Compiled in 1952 from: Carte du Sahara, 1:200,000, I...

    Person: United States. Army Map Service Harvard University. Center for Geographic Analysis. East View Cartographic, Inc.

    Release Date: 12-13-2011

  46. Differentiating 3T3-L1 adipocytes, introduced with siRNA against aof2 and rfk genes, or treated with tranylcypromine ArrayExpress

    ID: E-GEOD-18598

    Description: gulation. Since the enzymatic activity of LSD1 is FAD (flavin adenine dinucleotide)-dependent, its effects on gene expression may be influenced by FAD availability. To address the importance of histone demethylation in adipogenic differentiation and function, we performed cDNA microarray in LSD1-deficient 3T3-L1 cells as well as in the cells treated with LSD1 inhibitor tranylcypromine (TC). FAD-synthesizing enyme, riboflavin kinase (RFK) -deficient cells were also subjected to the microarray ana...

  47. ain:UAMS-1 and UAMS-1 allelic exchange mutants in fad and MocR : Characterization of the LFR Genomic Islet in Staphylococcus aureus CC30... BioProject

    ID: PRJNA324690

    Keywords: transcriptome

    Access Type: download

  48. Characterization of the LFR Genomic Islet in Staphylococcus aureus CC30 ArrayExpress

    ID: E-GEOD-83995

    Description: the LFR genomic islet: 1) fatty acid desaturase (fad) and 2) a MocR regulator. The overall results of our study suggest that the LFR islet enhances metabolic plasticity of the CC30 lineage which contributes to increased colonization, survival and persistence in the host. The background strain used for these experiments was UAMS-...

  49. Expression data from Hematopoietic stem cells OmicsDI

    ID: E-GEOD-64215

    Date Released: 01-02-2015

    Description: d to determine the molecular mechanism underlying Fancd2 and Foxo3a double knockout mice HSCs exhaustion. Methods: SLAM cells were obtained from WT, Fancd2KO, Foxo3aKO and DKO bone marrow cells. Total RNA from SLAM cell...

  50. Characterization of the LFR Genomic Islet in Staphylococcus aureus CC30 OmicsDI

    ID: E-GEOD-83995

    Date Released: 07-10-2016

    Description: the LFR genomic islet: 1) fatty acid desaturase (fad) and 2) a MocR regulator. The overall results of our study suggest that the LFR islet enhances metabolic plasticity of the CC30 lineage which contributes to increased colonization, survival and persistence in the host. The background strain used for these experiments was UAMS-...

  51. Crystal structure of a FAD binding protein from Bacillus cereus, a putative NAD(FAD)-utilizing dehydrogenases PDB

    ID: PDB:2I0Z

    Description: NAD(FAD)-utilizing dehydrogenases

  52. Expression data from Hematopoietic stem cells ArrayExpress

    ID: E-GEOD-64215

    Description: d to determine the molecular mechanism underlying Fancd2 and Foxo3a double knockout mice HSCs exhaustion. Methods: SLAM cells were obtained from WT, Fancd2KO, Foxo3aKO and DKO bone marrow cells. Total RNA from SLAM cell...

  53. CRYSTAL STRUCTURE OF YEAST FAD SYNTHETASE (FAD1) IN COMPLEX WITH FAD PDB

    ID: PDB:2WSI

    Description: FAD SYNTHETASE (E.C.2.7.7.2)

  54. FAD binding by ApbE protein from Salmonella enterica: a new class of FAD binding proteins PDB

    ID: PDB:3PND

    Description: Thiamine biosynthesis lipoprotein ApbE

  55. Characterization of the LFR Genomic Islet in Staphylococcus aureus CC30 BioProject

    ID: PRJNA327760

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: the LFR genomic islet: 1) fatty acid desaturase (fad) and 2) a MocR regulator. The overall results of our study suggest that the LFR islet enhances metabolic plasticity of the CC30 lineage which contributes to increased colonization, survival and persistence in the host. Overall design: The background strain used for these exper...
  56. Differentiating 3T3-L1 adipocytes, introduced with siRNA against aof2 and rfk genes, or treated with tranylcypromine OmicsDI

    ID: E-GEOD-18598

    Date Released: 06-27-2012

    Description: gulation. Since the enzymatic activity of LSD1 is FAD (flavin adenine dinucleotide)-dependent, its effects on gene expression may be influenced by FAD availability. To address the importance of histone demethylation in adipogenic differentiation and function, we performed cDNA microarray in LSD1-deficient 3T3-L1 cells as well as in the cells treated with LSD1 inhibitor tranylcypromine (TC). FAD-synthesizing enyme, riboflavin kinase (RFK) -deficient cells were also subjected to the microarray ana...

  57. Differentiating 3T3-L1 adipocytes, introduced with siRNA against aof2 and rfk genes, or treated with tranylcypromine BioProject

    ID: PRJNA123791

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: gulation. Since the enzymatic activity of LSD1 is FAD (flavin adenine dinucleotide)-dependent, its effects on gene expression may be influenced by FAD availability. To address the importance of histone demethylation in adipogenic differentiation and function, we performed cDNA microarray in LSD1-deficient 3T3-L1 cells as well as in the cells treated with LSD1 inhibitor tranylcypromine (TC). FAD-synthesizing enyme, riboflavin kinase (RFK) -deficient cells were also subjected to the microarray ana...
  58. Gene expression profiling reveals activation of the FA/BRCA pathway in advanced squamous cervical cancer with intrinsic resistance and therapy failure OmicsDI

    ID: E-GEOD-56363

    Date Released: 05-13-2014

    Description: g confirmed increased expression of BRCA1, BRIP1, FANCD2 and RAD51 in non-responsive compared with responsive advanced squamous cervical cancer, both in the initial set of 21 cervical cancer samples and the second set of 24 samples. Twenty-one patients with locally advanced squamous cell carcinoma (FIGO stage IIB-IIIB) were enrolled in the genomics study. A tissue fragment from a primary biopsy specimen was harvested from each patient prior to the therapy. Tissue samples were stored in liquid nitrogen until use for RNA extraction. One-color microarray experiment was performed to measure differences in gene expression between cervical cancer samples with 6-month complete response (12 patients ) and non-complete response (9 patients). Complet response group was considered as reference....

  59. Crystal Structure of RebH, a FAD-dependent halogenase from Lechevalieria aerocolonigenes, the L-Tryptophan with FAD complex PDB

    ID: PDB:2OA1

    Description: Crystal Structure of RebH, a FAD-dependent halogenase from Lechevalieria aerocolonigenes, the L-Tryptophan with FAD complex...

  60. Molecular Profiling of Metastatic Prostate Carcinoma Reveals Substantial Inter-individual and Limited Intra-individual Diversity: Implications for Pre... OmicsDI

    ID: E-GEOD-74685

    Date Released: 12-27-2015

    Description: rsely related to proliferation, the expression of Fanconi Anemia complex genes was strongly associated with increased cell cycle progression. Inhibition of FANCA, FANCC, FANCD2 and BRCA2 expression reduced prostate cancer growth. The limited molecular diversity across metastases may result from bottlenecks imposed by the dissemination process, limited evolutionary time between metastatic seeding and tumor sampling, intermixing of tumor clones, and selection resulting from treatment pressures. Though exceptions exist, evaluating a single metastasis provides a reasonable assessment of the key molecular processes that occur throughout the spectrum of disseminated tumors within an individual, and may be used for selecting treatments ba...

  61. afficking protein, a bifunctional FMN transferase/FAD pyrophosphatase, N55Y mutant, FAD bound form... PDB

    ID: PDB:4XDT

    Description: FAD:protein FMN transferase (E.C.2.7.1.180, 3.6.1.18)

  62. Homo sapiens isolate:primary skin fibroblasts : Functional studies of rare genetic variants causally connected with Alzheimer's disease in the Polish ... BioProject

    ID: PRJNA382346

    Keywords: raw sequence reads

    Access Type: download

    dataset.description: ith familial early-onset AD (fEOAD). The research group is recruited from among patients with causative mutations of EOAD and FAD, which are under hospital care of neurodegenerative disease diagnostic centers from all over Poland. As a research material primary skin fibroblasts were derived from fEOAD patients and age- and sex- matched controls....
  63. Transcription profiling of Pseudomonas aeruginosa PAO1-psrA::Tn vs. PAO1 in LB OmicsDI

    ID: E-GEOD-8083

    Date Released: 05-02-2014

    Description: b-Oxidative enzymes for fatty acid degradation (Fad) of long-chain fatty acid (LCFA), a component of lung surfactant phosphatidylcholine, are induced in vivo during lung infection...

  64. Crystal Structure of Candida glabrata FMN Adenylyltransferase in complex with FAD and Inorganic Pyrophosphate PDB

    ID: PDB:3G6K

    Description: FMN adenylyltransferase (E.C.2.7.7.2)

  65. Crystal structure of Aspergillus flavus FAD glucose dehydrogenase PDB

    ID: PDB:4YNT

    Description: glucose dehydrogenase (E.C.1.1.5.9)

  66. Crystal structure of FAD binding domain of Erv1 from Saccharomyces cerevisiae PDB

    ID: PDB:4E0H

    Description: Mitochondrial FAD-linked sulfhydryl oxidase ERV1 (E.C.1.8.3.2)

  67. FAD-linked sulfhydryl oxidase ALR mutation PDB

    ID: PDB:4LDK

    Description: FAD-linked sulfhydryl oxidase ALR (E.C.1.8.3.2)

  68. Transcription profiling of Pseudomonas aeruginosa PAO1-psrA::Tn vs. PAO1 in LB ArrayExpress

    ID: E-GEOD-8083

    Description: b-Oxidative enzymes for fatty acid degradation (Fad) of long-chain fatty acid (LCFA), a component of lung surfactant phosphatidylcholine, are induced in vivo during lung infection...

  69. Exploring the role of sigma factor gene expression on production by Corynebacterium glutamicum: sigma factor H and FMN as example ArrayExpress

    ID: E-GEOD-70017

    Description: osphate pathway and for enzymes dependent on FMN, FAD or NADPH as cofactor were upregulated when sigH was overexpressed. To test if sigH overexpression can be exploited for production of riboflavin-derived FMN or FAD, the endogenous gene for bifunctional riboflavin kinase/FMN adenyltransferase was co-expressed with sigH from a plasmid. Balanced expression of sigH and ribF improved accumulation of riboflavin (19.8 ± 0.3 μM) and allowed for its conversion to FMN (33.1 ± 1.8 μM) in the supernatant. While a proof-of-concept was reached, conversion was not complete and titers were not high. This study revealed that inducible and gradable overexpression of sigma factor genes is an interesting approach to switch gene expression profiles and to discover untapped potential of bacteria for chemical production. Endogenous sigma factor gene, sigH, was overexpressed in C. glutamicum ATCC13032 from IPTG inducible vector, pEKEx3. Two different concentration of IPTG (10 μM and 15 μM) was used for induction of SigH expression....

  70. Crystal structure of the FAD binding domain from mimivirus sulfhydryl oxidase R596 PDB

    ID: PDB:3GWN

    Description: Probable FAD-linked sulfhydryl oxidase R596 (E.C.1.8.3.2)

  71. Crystal structure of the general stress FMN/FAD binding protein from the phytopathogen Xanthomonas citri PDB

    ID: PDB:3U35

    Description: General stress protein

  72. Crystal structure of M. smegmatis DprE1 in complex with FAD and covalently bound BTZ043 PDB

    ID: PDB:4F4Q

    Description: Oxidoreductase, FAD-binding

  73. CRYSTAL STRUCTURE OF RAT NEURONAL NITRIC-OXIDE SYNTHASE FAD/NADP+ DOMAIN AT 1.9A RESOLUTION. PDB

    ID: PDB:1F20

    Description: NITRIC-OXIDE SYNTHASE (E.C.1.14.13.39)

  74. 1.55 Angstrom Resolution Crystal Structure of Glutathione Reductase from Yersinia pestis in Complex with FAD PDB

    ID: PDB:5VDN

    Description: Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7)

  75. Crystal Structure of a ferredoxin NADP+ reductase from Neisseria gonorrhoeae with bound NADP and FAD PDB

    ID: PDB:5THX

    Description: Ferredoxin--NADP reductase

  76. Crystal structure of SjTGR (thioredoxin glutathione reductase from Schistosoma japonicumi)complex with FAD PDB

    ID: PDB:4LA1

    Description: Thioredoxin glutathione reductase (E.C.1.6.4.5)

  77. Crystal structure of thioredoxin reductase from Mycobacterium smegmatis in complex with FAD PDB

    ID: PDB:5UTH

    Description: Thioredoxin reductase (E.C.1.8.1.9)

  78. ACD11_RAT UniProt:Swiss-Prot

    ID: B3DMA2

    Description: Acyl-CoA dehydrogenase family member 11 FAD FAD FAD FAD FAD; shared with dimeric partner

  79. CKX10_ORYSJ UniProt:Swiss-Prot

    ID: Q5Z620

    Description: Cytokinin dehydrogenase 10 FAD-binding PCMH-type FAD FAD FAD FAD Pro-rich

  80. FAS5_RHOFA UniProt:Swiss-Prot

    ID: P46377

    Description: acterized oxidoreductase ORF5 in fasciation locus FAD-binding PCMH-type FAD FAD FAD FAD FAD;...

  81. T. Maritima FDTS (R174K mutant) with FAD PDB

    ID: PDB:4GTL

    Description: Thymidylate synthase thyX (E.C.2.1.1.148)

  82. Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD PDB

    ID: PDB:2AXR

    Description: glucooligosaccharide oxidase (E.C.1.1.3.-)

  83. CKX1_ORYSJ UniProt:Swiss-Prot

    ID: Q0JQ12

    Description: Cytokinin dehydrogenase 1 FAD-binding PCMH-type FAD FAD FAD FAD Poly-Ala

  84. CKX11_ORYSJ UniProt:Swiss-Prot

    ID: Q6Z955

    Description: Cytokinin dehydrogenase 11 FAD-binding PCMH-type FAD FAD FAD FAD Ala-rich

  85. CKX1_ARATH UniProt:Swiss-Prot

    ID: O22213

    Description: Cytokinin dehydrogenase 1 FAD-binding PCMH-type FAD FAD FAD FAD FAD

  86. CKX7_ARATH UniProt:Swiss-Prot

    ID: Q9FUJ1

    Description: Cytokinin dehydrogenase 7 FAD-binding PCMH-type FAD FAD FAD FAD FAD

  87. CKX3_ARATH UniProt:Swiss-Prot

    ID: Q9LTS3

    Description: Cytokinin dehydrogenase 3 FAD-binding PCMH-type FAD FAD FAD FAD FAD

  88. Crystal structure of a FAD-dependent pyridine nucleotide-disulphide oxidoreductase from Desulfovibrio vulgaris PDB

    ID: PDB:3IWA

    Description: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (E.C.1.6.-.-)

  89. 2.2 Angstrom Resolution Crystal Structure of P-Hydroxybenzoate Hydroxylase from Pseudomonas putida in Complex with FAD. PDB

    ID: PDB:5TTI

    Description: Adenosylhomocysteinase (E.C.3.3.1.1)

  90. Crystal structure Acyl-CoA dehydrogenase from Brucella melitensis in complex with FAD PDB

    ID: PDB:5EZ3

    Description: Acyl-CoA dehydrogenase (E.C.1.3.8.-)

  91. Structure and action of the myxobacterial chondrochloren halogenase CndH, a new variant of FAD-dependent halogenases PDB

    ID: PDB:3E1T

    Description: Halogenase

  92. Human LSD1 Histone Demethylase-CoREST in complex with an FAD- tranylcypromine adduct PDB

    ID: PDB:2UXX

    Description: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 (E.C.1.-.-.-), REST COREPRESSOR 1

  93. Crystal structure of the FAD binding domain of cytochrome P450 BM3 PDB

    ID: PDB:4DQK

    Description: Bifunctional P-450/NADPH-P450 reductase (E.C.1.14.14.1, 1.6.2.4)

  94. 2.3 Angstrom Resolution Crystal Structure of Glutathione Reductase from Vibrio parahaemolyticus in Complex with FAD. PDB

    ID: PDB:5U1O

    Description: Adenosylhomocysteinase (E.C.3.3.1.1)

  95. 1.88 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus mutans UA159 in Complex with FAD PDB

    ID: PDB:5V36

    Description: Adenosylhomocysteinase (E.C.3.3.1.1, 1.8.1.7)

  96. Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, FAD substrate bound form PDB

    ID: PDB:4IFX

    Description: Thiamine biosynthesis lipoprotein ApbE

  97. Crystal structure of the C2 form of FAD synthetase from Thermotoga maritima PDB

    ID: PDB:2I1L

    Description: Riboflavin kinase/FMN adenylyltransferase

  98. Crystal structure of the general stress FMN/FAD binding protein from the phytopathogen Xanthomonas citri PDB

    ID: PDB:3U34

    Description: General stress protein

  99. Crystal structure of an acyl-CoA dehydrogenase domain protein from Burkholderia phymatum bound to FAD PDB

    ID: PDB:5IDU

    Description: Acyl-CoA dehydrogenase domain protein

  100. GCDH_MACFA UniProt:Swiss-Prot

    ID: Q8HXX8

    Description: ondrion Glutaryl-CoA dehydrogenase, mitochondrial FAD FAD FAD FAD FAD Substrate binding Substrate binding Proto...


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