ATF1 | bioCADDIE Data Discovery Index
Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Displaying 50 of 607 results for "ATF1"
i
  1. EWS/ATF1 activates Fos and induces soft tissue sarcomas from neural crest-derived cells [Agilent]. BioProject

    ID: PRJNA176041

    Keywords: Transcriptome or Gene expression

    Access Type: download

  2. EWS/ATF1 activates Fos and induces soft tissue sarcomas from neural crest-derived cells [Agilent]. OmicsDI

    ID: E-GEOD-41122

    Date Released: 05-13-2014

    Description: tion, leading to the expression of a chimeric EWS/ATF1 fusion gene. However, little is known about the mechanisms underlying how EWS/ATF1 is involved in the development of CCSs. In addition, the cells of origin for CCSs remain to be determined. We generated EWS/

  3. Atf1-mediated active gene response to H2O2 challenge. BioProject

    ID: PRJNA109969

    Keywords: Other

    Access Type: download

  4. EWS/ATF1 activates Fos and induces soft tissue sarcomas [Affymetrix]. BioProject

    ID: PRJNA176040

    Keywords: Transcriptome or Gene expression

    Access Type: download

  5. Atf1 overexpression gene expression changesS. pombe OmicsDI

    ID: E-GEOD-71820

    Date Released: 09-06-2015

    Description: Atf1 was overexpressed in wt S. pombe cells for 24 hours and gene expression changes were analysed all samples were processed in du...

  6. Atf1-mediated active gene response to H2O2 challenge ArrayExpress

    ID: E-GEOD-13053

    Description: ip mapping of the genomic binding sites for Sty1, Atf1, and the Atf1's binding partner Pcr1; the genome-wide transcriptional profiling of the atf1 and pcr1 strains in response to ...

  7. EWS/ATF1 activates Fos and induces soft tissue sarcomas [Affymetrix] ArrayExpress

    ID: E-GEOD-41121

    Description: tion, leading to the expression of a chimeric EWS/ATF1 fusion gene. However, little is known about the mechanisms underlying how EWS/ATF1 is involved in the development of CCSs. In addition, the cells of origin for CCSs remain to be determined. We generated EWS/

  8. Atf1-mediated active gene response to H2O2 challenge. OmicsDI

    ID: E-GEOD-13053

    Date Released: 05-04-2014

    Description: ip mapping of the genomic binding sites for Sty1, Atf1, and the Atf1's binding partner Pcr1; the genome-wide transcriptional profiling of the atf1 and pcr1 strains in response to ...

  9. EWS/ATF1 activates Fos and induces soft tissue sarcomas [Affymetrix]. OmicsDI

    ID: E-GEOD-41121

    Date Released: 04-22-2013

    Description: tion, leading to the expression of a chimeric EWS/ATF1 fusion gene. However, little is known about the mechanisms underlying how EWS/ATF1 is involved in the development of CCSs. In addition, the cells of origin for CCSs remain to be determined. We generated EWS/

  10. EWS/ATF1 activates Fos and induces soft tissue sarcomas from neural crest-derived cells [Agilent] ArrayExpress

    ID: E-GEOD-41122

    Description: tion, leading to the expression of a chimeric EWS/ATF1 fusion gene. However, little is known about the mechanisms underlying how EWS/ATF1 is involved in the development of CCSs. In addition, the cells of origin for CCSs remain to be determined. We generated EWS/

  11. The bZIP transcription factor Atf1 governs the oxidative stress response and sexual differentiation of... ArrayExpress

    ID: E-GEOD-64871

    Description: K module, have been elucidated but its downstream transcription factors remain unclear. Here we demonstrated that Atf1 with a basic leucine zipper domain is the transcription factor downstream of Hog1 in C. neoformans. We found that ATF1 expression was differentially regulated by oxidative damaging agents, mainly in a Hog1-dependent, but Mpk1-independent, manner. Interestingly, Atf1 not only promoted oxidative stress response a...

  12. Atf1 overexpression gene expression changesS. pombe BioProject

    ID: PRJNA292131

    Keywords: Transcriptome or Gene expression

    Access Type: download

  13. The bZIP transcription factor Atf1 governs the oxidative stress response and sexual differentiation of... OmicsDI

    ID: E-GEOD-64871

    Date Released: 01-17-2015

    Description: K module, have been elucidated but its downstream transcription factors remain unclear. Here we demonstrated that Atf1 with a basic leucine zipper domain is the transcription factor downstream of Hog1 in C. neoformans. We found that ATF1 expression was differentially regulated by oxidative damaging agents, mainly in a Hog1-dependent, but Mpk1-independent, manner. Interestingly, Atf1 not only promoted oxidative stress response a...

  14. Atf1 overexpression gene expression changesS. pombe ArrayExpress

    ID: E-GEOD-71820

    Description: Atf1 was overexpressed in wt S. pombe cells for 24 hours and gene expression changes were analysed all samples were processed in du...

  15. Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase BioProject

    ID: PRJNA267234

    Keywords: Other

    Access Type: download

    dataset.description: profiling of S. pombe set1/COMPASS/H3K4 mutants, atf1 and set1 atf1 deletion mutants, set1 clr3 deletion mutants; ChIP-chip tiling microarray profiling of S. pombe Set1,
  16. The bZIP transcription factor Atf1 governs the oxidative stress response and sexual differentiation of... BioProject

    ID: PRJNA272403

    Keywords: Transcriptome or Gene expression

    Access Type: download

  17. EWS/ATF1 activates Fos and induces soft tissue sarcomas from neural crest-derived cells ArrayExpress

    ID: E-GEOD-41123

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  18. The transcription factors Pcr1 and Atf1 have distinct roles in stress- and Sty1-dependent gene regulation OmicsDI

    ID: E-TABM-447

    Date Released: 05-02-2014

    Description: e expression was monitored in the knockout of two transcription factors, Pcr1 and Atf1, in the presence and absence of oxidative stress induced by KCl....

  19. Mus musculus strain:ICR : Nakai_MEF BioProject

    ID: PRJNA237998

    Keywords: genome sequencing

    Access Type: download

    dataset.description: ATF1/CREB members modulate proteostasis capacity by regulating the stress-inducible HSF1-transcription complex
  20. Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase ArrayExpress

    ID: E-GEOD-63301

    Description: profiling of S. pombe set1/COMPASS/H3K4 mutants, atf1 and set1 atf1 deletion mutants, set1 clr3 deletion mutants; ChIP-chip tiling microarray profiling of S. pombe Set1,

  21. Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase OmicsDI

    ID: E-GEOD-63301

    Date Released: 01-02-2015

    Description: profiling of S. pombe set1/COMPASS/H3K4 mutants, atf1 and set1 atf1 deletion mutants, set1 clr3 deletion mutants; ChIP-chip tiling microarray profiling of S. pombe Set1,

  22. Mus musculus : Nakai_ChIP-seq BioProject

    ID: PRJNA238001

    Keywords: genome sequencing

    Access Type: download

    dataset.description: ATF1/CREB members modulate proteostasis capacity by regulating the stress-inducible HSF1-transcription complex
  23. The transcription factors Pcr1 and Atf1 have distinct roles in stress- and Sty1-dependent gene regulation ArrayExpress

    ID: E-TABM-447

    Description: e expression was monitored in the knockout of two transcription factors, Pcr1 and Atf1, in the presence and absence of oxidative stress induced by KCl....

  24. 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) increase CREB1 binding to the C/EBP half-site GCAA BioProject

    ID: PRJNA349036

    Keywords: Other

    Access Type: download

    dataset.description: he double-stranded DNA binding of the mouse B-ZIP transcription factors (TFs) CREB1, ATF1, and JUND. 5mC inhibited CREB1 binding to the canonical CRE half-site |GTCA, but increased binding to the C/EBP half-site |GCAA. 5hmC inhibited CREB1 binding to all 8-mers except TGAT|GCAA, where binding is enhanced. We observed similar DNA binding patterns with the closely related TF: ATF1. In contrast, both 5mC and 5h...
  25. Mouse Model of Clear Cell Sarcoma ArrayExpress

    ID: E-GEOD-41293

    Description: lop in mice bearing conditional activation of EWS-ATF1, compared to control mouse tissues from the chest wall as well as tumor samples from mouse models of synovial sarcoma and osteosarcoma achieved by conditional disruption o...

  26. EWS/ATF1 activates Fos and induces soft tissue sarcomas from neural crest-derived cells. OmicsDI

    ID: E-GEOD-41123

    Date Released: 04-22-2013

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  27. Transcription profiling of stress treated fission yeast (stressors: compound: heavy metal, oxidation, alkylation and osmosis ArrayExpress

    ID: E-MEXP-29

    Description: employed on wild type and mutant cells (sty1 and atf1 knock-out cells). The 5 stresses were heat, and four types of compound: heavy metal, oxidation, alkylation and osmosis....

  28. ATF1_MOUSE UniProt:Swiss-Prot

    ID: P81269

    Description: Cyclic AMP-dependent transcription factor ATF-1 KID bZIP Basic motif Leucine-zipper Phosphoserine; by CaMK1, CDK3,...

  29. ATF1_BOVIN UniProt:Swiss-Prot

    ID: Q08DA8

    Description: Cyclic AMP-dependent transcription factor ATF-1 KID bZIP Basic motif Leucine-zipper Phosphoserine; by CaMK1, CDK3,...

  30. Mouse Model of Clear Cell Sarcoma BioProject

    ID: PRJNA176464

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: lop in mice bearing conditional activation of EWS-ATF1, compared to control mouse tissues from the chest wall as well as tumor samples from mouse models of synovial sarcoma and osteosarcoma achieved by conditional disruption o...
  31. ATFC_BOMMO UniProt:Swiss-Prot

    ID: Q9GPH3

    Description: Activating transcription factor of chaperone bZIP Basic motif Leucine-zipper

  32. Clear cell sarcoma human HEEBO microarray data ArrayExpress

    ID: E-GEOD-43045

    Description: lanoma, with a predilection for young adults. EWS-ATF1, the fusion product of a balanced chromosomal translocation between chromosomes 22 and 12, is considered the definitional feature of the tumor. Conditional expression of the EWS-ATF1 human cDNA in the mouse ...

  33. Clear cell sarcoma human HEEBO microarray data BioProject

    ID: PRJNA184178

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: lanoma, with a predilection for young adults. EWS-ATF1, the fusion product of a balanced chromosomal translocation between chromosomes 22 and 12, is considered the definitional feature of the tumor. Conditional expression of the EWS-ATF1 human cDNA in the mouse ...
  34. RNA-Seq experiment to identify genes regulated by ATF4 BioProject

    ID: PRJNA285117

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: Activating Transcription Factor 4 (ATF4) is a transcription
  35. Schizosaccharomyces pombe : ChIP-seq analysis of glucose starvation response in S. pombe BioProject

    ID: PRJDB4338

    Keywords: Genome sequencing

    Access Type: download

    dataset.description: Genomic distribution of Atf1, histone H3 and H3K9ac was analyzed by ChIP sequencing. 101 bp single end on illumina GAIIx.
  36. Comparative transcriptome analysis of the CO2 sensing pathway via differential expressions of carbonic anhydrase in Cryptococcus neoformans OmicsDI

    ID: E-GEOD-21192

    Date Released: 05-02-2014

    Description: d genes, including an oxidative stress-responsive Atf1 transcription factor, although a majority of them do not have any orthologs in other fungi. The present study revealed other roles of Atf1 in capsule and melanin production and diverse stress responses, including thermotolerance and antifungal drug resistance, of C. neoformans. This study provides further insights into the signaling network of CA/CO2-sensing pathway in pathogenic fungi. 17 slides are used in this analysis, 3 or 2 biological replicate experiments are performed, total RNAs are extracted from 2 strains (H99 Wild type strain, CTR4::CAN2) at 2 time points (0hr time, 12hr time) in 2 conditions (BCS, CuSO4). We use the mixed all of total RNAs from this experiment as a control RNA. We use Cy5 as Sample dye and Cy3 as a control dye. Several experiment samples are dye swaped....

  37. Transcription profiling of stress treated fission yeast (stressors: compound: heavy metal, oxidation, alkylation and osmosis OmicsDI

    ID: E-MEXP-29

    Date Released: 06-03-2014

    Description: employed on wild type and mutant cells (sty1 and atf1 knock-out cells). The 5 stresses were heat, and four types of compound: heavy metal, oxidation, alkylation and osmosis....

  38. Comparative transcriptome analysis of the CO2 sensing pathway via differential expressions of carbonic anhydrase in Cryptococcus neoformans ArrayExpress

    ID: E-GEOD-21192

    Description: d genes, including an oxidative stress-responsive Atf1 transcription factor, although a majority of them do not have any orthologs in other fungi. The present study revealed other roles of Atf1 in capsule and melanin production and diverse stress responses, including thermotolerance and antifungal drug resistance, of C. neoformans. This study provides further insights into the signaling network of CA/CO2-sensing pathway in pathogenic fungi. 17 slides are used in this analysis, 3 or 2 biological replicate experiments are performed, total RNAs are extracted from 2 strains (H99 Wild type strain, CTR4::CAN2) at 2 time points (0hr time, 12hr time) in 2 conditions (BCS, CuSO4). We use the mixed all of total RNAs from this experiment as a control RNA. We use Cy5 as Sample dye and Cy3 as a control dye. Several experiment samples are dye swaped....

  39. MCAF1_CHICK UniProt:Swiss-Prot

    ID: Q5ZIE8

    Description: Activating transcription factor 7-interacting protein 1 Fibronectin type-I...

  40. Clear cell sarcoma human HEEBO microarray data OmicsDI

    ID: E-GEOD-43045

    Date Released: 06-02-2014

    Description: lanoma, with a predilection for young adults. EWS-ATF1, the fusion product of a balanced chromosomal translocation between chromosomes 22 and 12, is considered the definitional feature of the tumor. Conditional expression of the EWS-ATF1 human cDNA in the mouse ...

  41. TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER PDB

    ID: PDB:1CI6

    Description: TRANSCRIPTION FACTOR ATF-4, TRANSCRIPTION FACTOR C/EBP BETA COMPLEX

  42. Activating transcription factor 6 is necessary and sufficient for alcoholic fatty liver disease in zebrafish BioProject

    ID: PRJNA243510

    Keywords: Transcriptome or Gene expression

    Access Type: download

  43. Solution Structure of a SUMO-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3 PDB

    ID: PDB:2RPQ

    Description: Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1...

  44. Crystal structure of the RhoGAP domain of human glucocorticoid receptor DNA-binding factor 1 PDB

    ID: PDB:3FK2

    Description: Glucocorticoid receptor DNA-binding factor 1

  45. Multifunctional role of the transcription factor Blimp1 in coordinating plasma cell differentiation BioProject

    ID: PRJNA291849

    Keywords: Other

    Access Type: download

  46. Disruption of Drp1 in the liver protects mice against diet-induced obesity through induction of fibroblast growth factor 21 BioProject

    ID: PRJNA270467

    Keywords: Transcriptome or Gene expression

    Access Type: download

  47. Pdx-1 activates islet α- and β-cell proliferation via a TRPC3/6- and ERK 1/2-regulated mechanism BioProject

    ID: PRJNA214905

    Keywords: Transcriptome or Gene expression

    Access Type: download

  48. NMR structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) mutant V77E in a Ca2+-free/Mg2+-bound Activator State PDB

    ID: PDB:2NA0

    Description: Guanylyl cyclase-activating protein 1

  49. PRC2 loss amplifies Ras-driven transcription and confers sensitivity to BRD4-based therapies [ChIP-seq] BioProject

    ID: PRJNA264623

    Keywords: Epigenomics

    Access Type: download

  50. Downstream targets of ID1 transcription factor in Non-Small Cell Lung Carcinoma (NSCLC) BioProject

    ID: PRJNA169351

    Keywords: Transcriptome or Gene expression

    Access Type: download


Displaying 50 of 607 results for "ATF1"