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  1. Neurospora crassa proteome OmicsDI

    ID: PRD000760

    Date Released: 05-04-2007

    Description: Not available

  2. COL1 database samples for the Late Pleistocene of Western Eurasia OmicsDI

    ID: PXD003190

    Date Released: 01-01-1000

    Description: The project aimed to characterize the collagen type I (COL1) sequences from various modern, Holocene and Pleistocene bone, antler and skin samples for...

  3. ATM INDUCES MACROD2 NUCLEAR EXPORT UPON DNA DAMAGE OmicsDI

    ID: PXD003712

    Date Released: 01-01-1000

    Description: ADP-ribosylation is a dynamic post-translation modification that regulates the early phase of various DNA repair pathways by recruiting repair factors...

  4. PAXX is an accessory c-NHEJ factor that associates with Ku70 and has overlapping functions with XLF OmicsDI

    ID: PXD004659

    Date Released: 01-01-1000

    Description: In mammalian cells, classical non-homologous end joining (c-NHEJ) is critical for DNA double-strand break repair induced by ionizing radiation and dur...

  5. NOTCH1 mediates a reciprocal switch between two distinct secretomes during senescence OmicsDI

    ID: PXD004168

    Date Released: 01-01-1000

    Description: Senescence, a persistent form of cell cycle arrest, is often associated with a diverse secretome, which provides complex downstream functionality for ...

  6. Identification of A. thaliana 2-Cys peroxiredoxins interacting proteins OmicsDI

    ID: PXD003923

    Date Released: 01-01-1000

    Description: Peroxiredoxins are ubiquitous thiol-dependent peroxidases for which chaperone and signaling roles have been reported in various types of organisms in ...

  7. Direct glycan structure determination of intact N-linked glycopeptides by low-energy collision-induced association tandem mass spectrometry and predic... OmicsDI

    ID: PXD002803

    Date Released: 01-01-1000

    Description: Intact glycopeptide MS analysis to reveal site-specific protein glycosylation is an important frontier of proteomics. However, computational tools for...

  8. Sulfoxide derivatives of the methionyl peptides in human Jurkat T-lymphocytes OmicsDI

    ID: PRD000013

    Date Released: 02-08-2006

    Description: Not available

  9. RPE-1 and RPE-1 trisomic AHA p-c and steady state data OmicsDI

    ID: PXD004915

    Date Released: 01-01-1000

    Description: We developed a pulse-chase method in where fully SILAC (heavy, medium-heavy and Light) labelled cells were pulsed with Azidohomoalanine (AHA) and then...

  10. wt vs daf-2 C. elegans protein turnover OmicsDI

    ID: PXD002317

    Date Released: 01-01-1000

    Description: Most aging hypotheses revolve around the accumulation of some sort of damage resulting in gradual physiological decline and ultimately death. Avoiding...

  11. Metalloprotease SPRTN/DVC1 Orchestrates Replication-Coupled DNA-Protein Crosslink Removal OmicsDI

    ID: PXD004154

    Date Released: 01-01-1000

    Description: Cytotoxicity of DNA-protein crosslinks (DPCs) is ascribed largely to their ability to block the progression of DNA replication fork. DPCs are frequent...

  12. Quest for missing proteins in the human spermatozoa: an update OmicsDI

    ID: PXD003947

    Date Released: 01-01-1000

    Description: Here, we report work as part of C-HPP initiatives on chromosomes 14 (France) and 2 (Switzerland) aiming to identify missing proteins in ejaculated hum...

  13. Proteomic comparison of Chlamydomonas wildtype and calredoxin knock-down mutants via 14N/15N metabolic labeling OmicsDI

    ID: PXD003759

    Date Released: 01-01-1000

    Description: Calcium (Ca2+) and redox signaling play important roles in acclimation processes from archaea to eukaryotic organisms. Herein we characterized a uniqu...

  14. Proteomic and genomic characterization of a yeast model for Ogden Syndrome OmicsDI

    ID: PXD004923

    Date Released: 01-01-1000

    Description: Naa10 is a N-terminal acetyltransferase that, in a complex with its auxiliary subunit Naa15, co-translationally acetylates the -amino group of n...

  15. Comprehensive proteomic analysis of human erythropoiesis - experiment 3 over 4 OmicsDI

    ID: PXD004315

    Date Released: 01-01-1000

    Description: We performed a proteomic analysis of human erythropoiesis using 4 umbilical cord's blood samples. This study revealed the absolute and quantitative ex...

  16. Ovarian Cancer Proteomics of FFPE Tissue OmicsDI

    ID: PXD003607

    Date Released: 01-01-1000

    Description: We have performed in-depth examination of single tissue sections from a collection of FFPE and Frozen treated tumors, as well as cell line material al...

  17. Penicillium oxalicum mutant EU2106 secretome LC-MS/MS OmicsDI

    ID: PXD004046

    Date Released: 01-01-1000

    Description: Comparative assays of the secretomes of P. oxalicum strains HP7-1 and its mutant EU2106 .

  18. Human HeLa cell lince SILAC OmicsDI

    ID: PXD003813

    Date Released: 01-01-1000

    Description: The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic protein

  19. In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - iPRG 2008 provided DB analysis OmicsDI

    ID: PXD003956

    Date Released: 01-01-1000

    Description: This dataset is no actual new study but the results of the benchmark of the iPRG2008 benchmark dataset used in the manuscript "In-depth Analysis of Pr...

  20. Proteomics Analyses of Mycelium and Cysts of Phytophthora capsici OmicsDI

    ID: PXD002603

    Date Released: 01-01-1000

    Description: In this project, we have performed a comparative analysis of the proteomes of the mycelium and cysts of P. capsici. The identified proteins were funct...

  21. Comparative Proteome Analysis in Schizosaccharomyces pombe identifies metabolic targets to improve protein production and secretion OmicsDI

    ID: PXD003016

    Date Released: 01-01-1000

    Description: This dataset contains additional experimental results for the determination of the effect of Fluconazole and amino acid supplementation to the NW10 st...

  22. Co-immunoprecipitation of HA-tagged proteins in Giardia lamblia OmicsDI

    ID: PXD003718

    Date Released: 01-01-1000

    Description: Giardia lamblia's diverged endocytic system was investigated using co-immunoprecipitation of known and conserved endocytic factors which led to the di...

  23. Human exosome proteome OmicsDI

    ID: PXD000117

    Date Released: 01-01-1000

    Description: Proteomics study of human urine exosomes. This data describes the proteomic complement of the human exosomal urine fraction from 10 healthy volunteers...

  24. HUPO Kidney and Urine Proteome Project OmicsDI

    ID: PRD000042

    Date Released: 08-08-2008

    Description: Not available

  25. Selectivity in enrichment of PKA isoforms and their intereactors OmicsDI

    ID: PRD000062

    Date Released: 05-21-2008

    Description: Not available

  26. Characterization of the Mouse Brain Proteome Using Global Proteomic Analysis Complemented with Cysteinyl-Peptide Enrichment OmicsDI

    ID: PRD000010

    Date Released: 01-24-2006

    Description: Whole Mouse brain proteome analysis.

  27. 2D LC-ESI MS/MS of Marek`s disease virus transformed chicken CD4 T cell line OmicsDI

    ID: PRD000016

    Date Released: 05-09-2006

    Description: Not available

  28. SgK269 Interactome OmicsDI

    ID: PXD004250

    Date Released: 01-01-1000

    Description: Anti Flag IP of Flag-SgK269 and control IP from MCF10A EcoR cells.

  29. 3T3-L1 adipocyte protein turnover OmicsDI

    ID: PXD003696

    Date Released: 01-01-1000

    Description: Insulin is a potent regulator of protein metabolism. Here we describe a time-resolved map of insulin-regulated protein turnover in 3T3-L1 adipocytes u...

  30. Proteomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in Synechocystis sp. PCC 6803 OmicsDI

    ID: PXD004974

    Date Released: 01-01-1000

    Description: Using an engineered 3-HP producing SM strain, in this project, the cellular responses to 3-HP internally produced were first determined using a quanti...

  31. Analyzing downstream targets of Beauveria bassiana gelsolin duing conidal development OmicsDI

    ID: PXD003618

    Date Released: 01-01-1000

    Description: Comparative proteomics, between the wild type and delta BbGel1 strains grown on the surface of culture media, is performed to explore the downstream ...

  32. Streptococcus pyogenes (GAS) membrane vesicles (MVs) and membranes LC-MSMS OmicsDI

    ID: PXD005167

    Date Released: 01-01-1000

    Description: Proteomics characterisation of membrane vesicles (MV) and corresponding membranes derived from Streptococcus pyogenes M1 (clinical isolate ISS3348) gr...

  33. HCOV-NL63 spike protein glycopeptides OmicsDI

    ID: PXD004557

    Date Released: 01-01-1000

    Description: HCoV-NL63 is a coronavirus that can cause severe lower respiratory tract infections requiring hospitalization. Of great interest is understanding the ...

  34. quancat based proteomics identifies distinct patterns of protein synthesis induced by hypertrophic agents in cardiomyocytes OmicsDI

    ID: PXD004127

    Date Released: 01-01-1000

    Description: The aim of this project was to quantify the effects of different hypertrophic stimuli on synthesis of specific proteins in adult rat ventricular cardi...

  35. Sec62 regulates ER-phagy during recovery from ER stress OmicsDI

    ID: PXD003961

    Date Released: 01-01-1000

    Description: Perturbing ER homeostasis activates stress programs collectively called the unfolded protein response (UPR). The UPR enhances production of ER-residen...

  36. Identification of human PKD2 interaction partners from cytosolic protein fractions of HeLa cells by affinity enrichment cross-linking/MS OmicsDI

    ID: PXD003909

    Date Released: 01-01-1000

    Description: We investigated the interaction network of human PKD2 in the cytosol as well as in Golgi-enriched subcellular protein fractions, using an affinity enr...

  37. GPMDB Submission: Plasma Proteome OmicsDI

    ID: PRD000004

    Date Released: 08-20-2005

    Description: Not available

  38. ORNL - UC, Berkeley AMD (Acid Mine Drainage) Community Proteome Study OmicsDI

    ID: PRD000021

    Date Released: 03-29-2007

    Description: Not available

  39. In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - PXD000603 UniProt proteome analysis OmicsDI

    ID: PXD003072

    Date Released: 01-01-1000

    Description: This dataset is no actual new study but the results of the benchmark against the PXD000603 used in the manuscript "In-depth Analysis of Protein Infere...

  40. HHV5 glycoprotein H characterization OmicsDI

    ID: PXD003810

    Date Released: 01-01-1000

    Description: Relative peptide amouint of glycoprotein H found in human cytomegalovirus (HHV5) between strain AD169 and VR1814

  41. Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome OmicsDI

    ID: PRD000050

    Date Released: 07-17-2008

    Description: Not available

  42. An optimised fragmentation regime for cross-linking/mass spectrometry OmicsDI

    ID: PXD003737

    Date Released: 01-01-1000

    Description: In this study we compared three different fragmentation techniques and two combined fragmentation schemes available on a novel tribrid mass spectromet...

  43. Titration of Sall4 by the NuRD complex facilitates neural differentiation of ES cells OmicsDI

    ID: PXD003614

    Date Released: 01-01-1000

    Description: Sall4 is a transcription factor essential for early mammalian development. Though it is reported to play an important role in embryonic stem (ES) cell...

  44. P falciparum gametocyte proteomes OmicsDI

    ID: PXD004124

    Date Released: 01-01-1000

    Description: The P.falciparum gametocyte proteomes of wild type gametocytes and two clones of Pfg377 depleted gametocytes were obtained for a label free comparativ...

  45. Identification of potential human PML interacting proteins in Nicotiana benthamiana OmicsDI

    ID: PXD004254

    Date Released: 01-01-1000

    Description: In spite of the crucial tasks fulfilled by the subnuclear structures known as PML nuclear bodies (PML-NBs) in mammalian cells, the presence of PML-NBs...

  46. The marine bacterium Pseudomonas fluorescens BA3SM1 counteracts toxicity of CdSe nanoparticles OmicsDI

    ID: PXD004012

    Date Released: 01-01-1000

    Description: CdSe nanoparticles (CdSe NPs) are extensively used in the industry of renewable energies and it is regrettably expectedthat these pollutants will some...

  47. Bovine milk LCMSMS proteomics OmicsDI

    ID: PXD003011

    Date Released: 01-01-1000

    Description: This project tested the hypothesis that drying off and involution is accompanied by similar changes among the low abundance proteins as mastitis, ther...

  48. Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas spp.Part 6a OmicsDI

    ID: PXD004064

    Date Released: 01-01-1000

    Description: Bacteria that inhabit the rhizosphere of agricultural crops can have a beneficial effect on crop growth, including through the solubilisation and rem...

  49. Temporal regulation of Lsp1 O-GlcNAcylation and phosphorylation duringactivated Bcellsapoptosis OmicsDI

    ID: PXD003788

    Date Released: 01-01-1000

    Description: Here, we decipher the molecular mechanisms bridging B cell activation and apoptosis mediated by post-translational modification(PTM). We found that O-...

  50. Profiling of spreading- coupled protein tyrosine phosphorylation OmicsDI

    ID: PXD004340

    Date Released: 01-01-1000

    Description: Protein tyrosine phosphorylation is an important mechanism that regulates cytoskeleton reorganization and cell spreading of migratory cells. A number ...

  51. In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - yeast UniProt proteome with isoforms analysis OmicsDI

    ID: PXD003067

    Date Released: 01-01-1000

    Description: This dataset is no actual new study but the results of the benchmark of the Yeast Gold Dataset used in the manuscript "In-depth Analysis of Protein In...

  52. Combination of bottom up 2D-LC-MS and intact protein separation enhances coverage of proteome and low molecular weight short open reading frame encode... OmicsDI

    ID: PXD004325

    Date Released: 01-01-1000

    Description: The recent discovery of an increasing number of small open reading frame (sORF) creates the need for suitable analytical technologies for the comprehe...

  53. Proteomics of Tsetse salivary glands before and after infection with Trypanosoma parasite. OmicsDI

    ID: PXD004577

    Date Released: 01-01-1000

    Description: Trypanosoma brucei causes African trypanosomosis to humans and cattle, against which there are no effective vaccines or drugs. The tsetse fly Glossina...

  54. Glycoproteomics reveals the presence of decorin peptides with anti-myostatin activity in human atrial fibrillation OmicsDI

    ID: PXD004465

    Date Released: 01-01-1000

    Description: We analysed by proteomics the cardiac extraceelular matrix in human atrial fibrillation and disvovered the presence of extracellular matrix protein fr...

  55. Tube-gel digestion: a fast and reproducible sample preparation protocol for label-free quantitative proteomics of complex biological samples OmicsDI

    ID: PXD003841

    Date Released: 01-01-1000

    Description: Comparison of tube-gel protocol to stacking gel and liquid digestion for label-free extracted ion-current quantification of complex biological samples...

  56. In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - PXD001118 UniProt proteome analysis OmicsDI

    ID: PXD003959

    Date Released: 01-01-1000

    Description: This dataset is no actual new study but the results of the benchmark against the submission PXD001118 used in the manuscript "In-depth Analysis of Pro...

  57. Pea drought tolerance analysis by LC-MSMS OmicsDI

    ID: PXD004587

    Date Released: 01-01-1000

    Description: Abiotic stresses caused by adverse environmental conditions are responsible for heavy economic losses on pea crop, being drought one of the most impor...

  58. Data in support of Synthesis and deposition of basement membrane proteins by primary brain capillary endothelial cells in a murine model of the blood-... OmicsDI

    ID: PXD003981

    Date Released: 01-01-1000

    Description: The aim of the present study was to analyze four different in vitro models of the murine BBB for expression and possible secretion of major basement m...

  59. Uterine flushing proteome of tammar wallaby from diapause to reactivation and late gestation OmicsDI

    ID: PXD004170

    Date Released: 01-01-1000

    Description: The tammar blastocyst remains in embryonic diapause until it receives a signal from the uterine endometrium via its secretions.This study analaysed ut...

  60. Site-specific glycosylation of donkey milk lactoferrin investigated by High Resolution Mass Spectrometry OmicsDI

    ID: PXD004289

    Date Released: 01-01-1000

    Description: A comprehensive glycosylation profile of donkey lactoferrin, isolated by ion exchange chromatography from an individual milk sample, was obtained by m...

  61. Manassantin A SILAC-Pulse Proteolysis OmicsDI

    ID: PXD002305

    Date Released: 01-01-1000

    Description: Manassantin A is a natural product that has been isolated from the perennial herb Saururus chinensis Baill and the aquatic plant Saururus cernuus. Ma...

  62. Phosphoproteomic characterization of infulenza A virus infected human macrophages OmicsDI

    ID: PXD001620

    Date Released: 01-01-1000

    Description: Human primary macrophages were infected with influenza A virus (H3N2/Udorn strain, HA 256) for 6 hrs or left untreated. Cells were collected and lysed...

  63. Quantification of highly homologous Major Urinary Proteins in wild house mice OmicsDI

    ID: PXD004642

    Date Released: 01-01-1000

    Description: Male house mice were housed under semi-natural conditions and their urinary proteins were quantified using MS1 and MS2 based label-free strategies. Th...

  64. Analysis of skeletal muscle from a tailored pig model of Duchenne muscular dystrophy OmicsDI

    ID: PXD002918

    Date Released: 01-01-1000

    Description: We recently generated a novel genetically engineered pig model displaying the fundamental biochemical, clinical and pathological hallmarks of human DM...

  65. In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - iPRG 2008 Swiss-Prot analysis OmicsDI

    ID: PXD003953

    Date Released: 01-01-1000

    Description: This dataset is no actual new study but the results of the benchmark of the iPRG2008 benchmark dataset used in the manuscript "In-depth Analysis of Pr...

  66. Comprehensive proteomic analysis of human erythropoiesis - experiment 4 over 4 OmicsDI

    ID: PXD004316

    Date Released: 01-01-1000

    Description: We performed a proteomic analysis of human erythropoiesis using 4 umbilical cord's blood samples. This study revealed the absolute and quantitative ex...

  67. Myosin VIIA 138-1 immunoaffinity purification OmicsDI

    ID: PXD004221

    Date Released: 01-01-1000

    Description: Through its activity in stereocilia, MYO7A (myosin VIIA) is essential for hair cell function in the inner ear. Utilizing multiple stages of immunoaffi...

  68. Choroid plexus proteome with and without LPS OmicsDI

    ID: PXD001347

    Date Released: 01-01-1000

    Description: Choroid plexus was isolated and pooled from the 5 mice after the perfusion with bromo phenol blue from 0 h and 6 h LPS treated mice. Proteins were iso...

  69. Identification of microRNA394 target genes in A. thaliana OmicsDI

    ID: PXD002390

    Date Released: 01-01-1000

    Description: Expression of the F-Box protein Leaf Curling Responsiveness (LCR) is regulated by microRNA, miR394, and alterations to this interplay in Arabidopsis t...

  70. Probing the protein inventory of the human pathogen Clostridium difficile OmicsDI

    ID: PXD003659

    Date Released: 01-01-1000

    Description: The anaerobic and spore-forming bacterium Clostridium difficile has turned into an intensively studied species which can be attributed to increasing n...

  71. Identification of proteins interacting with GFP-GA, GR, PA, PG and PR fusion proteins OmicsDI

    ID: PXD004938

    Date Released: 01-01-1000

    Description: Expansion of a hexanucleotide repeat GGGGCC (G4C2) in C9ORF72 is the most common cause of amyotrophic lateral sclerosis and frontotemporal dementia. T...

  72. Chicken plasma proteome LPS OmicsDI

    ID: PXD003335

    Date Released: 01-01-1000

    Description: Lipopolysaccharides (LPS) are cell wall components of gram-negative bacteria and endotoxins that cause inflammation and sickness in vertebrate animals...


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