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  1. Transcription profiling of mouse intestine in ENU mutagenesis mouse strains with missense mutations in Muc2 mucin and ER stress OmicsDI

    ID: E-GEOD-9913

    Date Released: 04-30-2015

    Description: Background; MUC2 mucin produced by intestinal goblet cells is the major component of the intestinal mucus barrier. MUC2 homo-oligomerizes intracellul...

  2. Transcription profiling by array of Drosophila larvae mutant for Male-Specific Lethal 2 (MSL2) OmicsDI

    ID: E-GEOD-12054

    Date Released: 04-29-2015

    Description: Drosophila males double transcription of their single X chromosome to equalize X-linked gene expression with females, which carry two X chromosomes. I...

  3. Transcription profiling by array of human peripheral blood mononuclear cells infected with Francisella tularensis OmicsDI

    ID: E-GEOD-12108

    Date Released: 04-29-2015

    Description: Differential expression in human peripheral blood monocytes between F. novicida-infected and uninfected, and between Francisella tularensis tularensis...

  4. Transcription profiling by array of yeast gcn2, gcn4 and gln3 deletion mutants treated with rapamycin or 3-amino-1,2,4-triazole (3-AT) OmicsDI

    ID: E-GEOD-15254

    Date Released: 04-29-2015

    Description: Two nutrient sensing and regulatory pathways, the general amino acid control (GAAC) and the target of rapamycin (TOR), control yeast growth and metabo...

  5. Transcription profiling by array of Arabidopsis mutant for arf2 after treatment with brassinazole OmicsDI

    ID: E-GEOD-11216

    Date Released: 04-29-2015

    Description: While the close relationship between BRs and auxin has been widely reported, the molecular mechanism for combinatorial control of shared target genes ...

  6. Transcription profiling by array of Arabidopsis after iron deprivation OmicsDI

    ID: E-GEOD-15189

    Date Released: 04-29-2015

    Description: Due to limited bio-availability of Fe, plants evolved adaptive alterations in development regulated at the transcriptional level. We investigated the ...

  7. C-Myb+ erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages OmicsDI

    ID: E-GEOD-66970

    Date Released: 04-27-2015

    Description: Although classified as hematopoietic cells, tissue-resident macrophages are selfrenewing and maintained independently of adult hematopoiesis. While mo...

  8. Transcriptome characterization of social stressed C57B6 mice exhibiting PTSD like features OmicsDI

    ID: E-GEOD-68077

    Date Released: 04-27-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  9. Transcription profiling by array of yeast wild type and PTC1 null mutant in reponse to Aflatoxin B1 OmicsDI

    ID: E-GEOD-17367

    Date Released: 04-29-2015

    Description: The evaluation of the toxicity of Aflatoxin B1 using yeast gene expressions. Two yeast strains; parental BY4743 and PTC1 mutant, were used for this st...

  10. Gene Expression in MCF10A cells through Differentiation on Transwells OmicsDI

    ID: E-GEOD-10070

    Date Released: 04-29-2015

    Description: To further understand the differences occurring in MCF10A cells as they polarize and differentiate in the Transwell® model, we performed gene express...

  11. Transcription profiling by array of lungs from C57BL/6J mice infected with Sendai virus OmicsDI

    ID: E-GEOD-10964

    Date Released: 04-29-2015

    Description: Analysis of gene expression in lungs of C57BL/6J mice that develop chronic airway disease phenotypes after a single Sendai virus infection, compared w...

  12. Transcription profiling by array of Drosophila larval eye discs mutant for rbs and/or wts OmicsDI

    ID: E-GEOD-24978

    Date Released: 04-30-2015

    Description: Third instar larval eye discs provide an in vivo model for cell cycle exit studies. Posterior to the Second Mitotic Wave proliferation is absent in a...

  13. Transcription profiling of human airway epithelial cell-conditioned monocyte-derive dendritic cells OmicsDI

    ID: E-GEOD-12773

    Date Released: 04-29-2015

    Description: Dendritic cells differentiate from their precursors in the airway mucosa under local environmental instruction. Airway epithelial cells (AEC) are a p...

  14. Molecular analysis of gastric cancer identifies discrete subtypes associated with distinct clinical characteristics and survival outcomes: the ACRG (A... OmicsDI

    ID: E-GEOD-62254

    Date Released: 04-27-2015

    Description: Gastric cancer, a leading cause of cancer related deaths, is a heterogeneous disease, with little consensus on molecular subclasses and their clinical...

  15. Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis (ChIP-seq) OmicsDI

    ID: E-GEOD-59580

    Date Released: 04-28-2015

    Description: DNA methylation is tightly regulated throughout mammalian development and altered methylation patterns are a hallmark of cancer. The methylcytosine di...

  16. Long-term exposure to cold plasma-generated ROS –an in vitro model for redox-related diseases of the skin OmicsDI

    ID: E-GEOD-74876

    Date Released: 11-30-2015

    Description: Oxidative stress illustrates an imbalance between radical formation and removal. Frequent redox stress is critically involved in a variety of human pa...

  17. Whole genome expression data from WT, Atf4-/-, and Cebpg-/- MEFs under normal and amino acid deprived (AAD) growth conditions OmicsDI

    ID: E-GEOD-75150

    Date Released: 11-30-2015

    Description: The integrated stress response (ISR) controls cellular adaptations to nutrient deprivation, redox imbalances and ER stress. ISR genes are upregulated ...

  18. H3K4/H3K9me3 Bivalent Chromatin Domains Targeted by Lineage-specific DNA Methylation Pauses Adipocyte Differentiation OmicsDI

    ID: E-GEOD-73434

    Date Released: 11-30-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  19. Transcription and Imprinting Dynamics in Developing Postnatal Male Germline Stem Cells OmicsDI

    ID: E-GEOD-62355

    Date Released: 12-01-2015

    Description: Paternal imprinting initiates in primordial germ cells (PGCs), and is considered largely completed at birth. The resulting postnatal spermatogonial s...

  20. Epigenetic profiling in CD4 and CD8 T cells from Graves’ disease patients reveals changes in genes associated with T cell receptor signaling [methyl... OmicsDI

    ID: E-GEOD-71955

    Date Released: 12-01-2015

    Description: In Graves’ disease (GD), a combination of genetic, epigenetic and environmental factors causes an autoimmune response to the thyroid gland, characte...

  21. MicroRNA profiling of neurons generated using induced pluripotent stem cells derived from patients with schizophrenia and 22q11.2 deletion OmicsDI

    ID: E-GEOD-65367

    Date Released: 08-19-2015

    Description: We are using induced pluripotent stem cell (iPSC) technology to study neuropsychiatric disorders associated with 22q11.2 microdeletions (del), the mos...

  22. Transcription Dynamically Patterns the Meiotic Chromosome-Axis Interface [ChIP-Seq] OmicsDI

    ID: E-GEOD-69231

    Date Released: 08-19-2015

    Description: Meiotic chromosomes are highly compacted yet remain transcriptionally active. To understand how chromosome folding accommodates transcription, we inve...

  23. Nitric oxide regulates gene expression in cancers by controlling histone posttranslational modifications [HiSeq 2000] OmicsDI

    ID: E-GEOD-66318

    Date Released: 12-01-2015

    Description: Dynamic changes in histone posttranslational modifications (PTMs) are important regulators of chromatin structure and gene transcription in both norma...

  24. Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination [RNA] OmicsDI

    ID: E-GEOD-66953

    Date Released: 12-01-2015

    Description: Upon recruitment to active enhancers and promoters, RNA polymerase II (Pol_II) generates short non-coding transcripts of unclear function. The mechani...

  25. Bortezomib resistance in CCRF-CEM cell line [CGH] OmicsDI

    ID: E-GEOD-74633

    Date Released: 12-02-2015

    Description: Bortezomib is a proteasome inhibitor used in severel different hematological malignancies. Resistance to this drug is still poorly understood. In orde...

  26. Oviduct-Embryo Interactions in Cattle: Two-Way Traffic or a One-Way Street? [RNA-Seq] OmicsDI

    ID: E-GEOD-74612

    Date Released: 12-02-2015

    Description: The objective of this study was to examine the effect of the presence of a single or multiple embryo(s) on the transcriptome of the bovine oviduct. In...

  27. Expression profile of Ceacam1 downstream genes in NSC and NSCL61 OmicsDI

    ID: E-GEOD-70023

    Date Released: 12-01-2015

    Description: To identify Ceacam1 downstream factors, we compared gene expressions between NSCs and Ceacam1L-expressing NSC and between NSCL61 and Ceacam1shRNA-expr...

  28. RNA sequencing of Control, ΔCop1β, ΔCop1β and ΔCop1β ΔETV1/4/5β islets OmicsDI

    ID: E-GEOD-70788

    Date Released: 12-01-2015

    Description: Identify genes which are differentially expressed in ΔCop1β compared to control islets and are also signficantly rescued in ΔCop1Β ΔETV1/4/5β I...

  29. Genes Targeted by the Hedgehog-Signaling Pathway can be Regulated by Estrogen Related Receptor β OmicsDI

    ID: E-GEOD-71209

    Date Released: 12-01-2015

    Description: We report Hedgehog signaling responsive genes with or without Esrrb in NI3T3 cells. Using Hh-responsive cells, we used RNA-Seq to find Hh responsive g...

  30. On the relationship of protein and mRNA dynamics in vertebrate embryonic development OmicsDI

    ID: E-GEOD-73905

    Date Released: 12-01-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  31. Genome-wide Binding of Acetylated-STAT3 Demonstrates Negative Regulation of Dendritic Cells OmicsDI

    ID: E-GEOD-74262

    Date Released: 12-01-2015

    Description: Dendritic cells (DC) play a vital role in the induction of activation or tolerance of immune response. STAT3 is a master transcriptional regulator of...

  32. Gene Expression Profiling of IL-17A-treated Synovial Fibroblasts from the Human Temporomandibular Joint OmicsDI

    ID: E-GEOD-74668

    Date Released: 12-01-2015

    Description: Synovial fibroblasts contribute to the inflammatory temporomandibular joint under pathogenic stimuli. Synovial fibroblasts and T cells participate in ...

  33. Natural circular RNA encodes regulatory small peptides in Mammalian cells OmicsDI

    ID: E-GEOD-74610

    Date Released: 12-02-2015

    Description: To test the hypothesis that circRNAs might encode functional peptides in mammalian cells, we studied the long intergenic non-protein coding RNA, p53 i...

  34. HCT116 cells treated with the p97 inhibitior CB-5083 OmicsDI

    ID: E-GEOD-73588

    Date Released: 12-01-2015

    Description: The goal of this study was to analyze differential gene expression 8 hr after treatment of CB-5083, a small molecule inhibitor of p97 (VCP), in HCT116...

  35. Ets-domain transcription factor Ets21c and nuclear receptor Ftz-F1 are novel effectors of JNK promoting tumor malignancy OmicsDI

    ID: E-GEOD-65261

    Date Released: 12-01-2015

    Description: Cancer represents a complex family of diseases, characterized by the uncontrolled malignant growth of a particular cell type and by metastatic dissemi...

  36. Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination [additional RNA] OmicsDI

    ID: E-GEOD-73021

    Date Released: 12-01-2015

    Description: Upon recruitment to active enhancers and promoters, RNA polymerase II (Pol_II) generates short non-coding transcripts of unclear function. The mechani...

  37. An aspartyl protease defines a novel pathway for export of Toxoplasma proteins into the host cell OmicsDI

    ID: E-GEOD-73986

    Date Released: 11-30-2015

    Description: Toxoplasma gondii is an obligate intracellular Apicomplexan parasite capable of invading and surviving within nucleated cells in most warm-blooded ani...

  38. Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination (OLIG2 ... OmicsDI

    ID: E-GEOD-74646

    Date Released: 12-01-2015

    Description: To better understand the OLIG2 binding site in the whole-genome of mouse neural stem cells, ChIP was performed using 107 mouse neural stem cells. The ...

  39. Retinoid X Receptor activation reverses the age-related deficiency in myelin debris phagocytosis and enhances remyelination OmicsDI

    ID: E-GEOD-66988

    Date Released: 12-01-2015

    Description: The efficiency of central nervous system (CNS) remyelination declines with age. This is in part due to an age-associated decline in the phagocytic rem...

  40. Polytene underreplication OmicsDI

    ID: E-GEOD-72511

    Date Released: 12-01-2015

    Description: Chemical cross-linking and high-throughput sequencing have revealed regions of intra-chromosomal interaction, referred to as topologically associating...

  41. Genomics of the ovine heart ontogeny during the perinatal period OmicsDI

    ID: E-GEOD-66725

    Date Released: 08-19-2015

    Description: The period of development from the last two weeks of gestation through the first two weeks of life spans a period of great functional and metabolic ch...

  42. mRNA expression profile in vascular smooth muscle cells (VSMCs) after inducing calcification OmicsDI

    ID: E-GEOD-74755

    Date Released: 12-01-2015

    Description: Vascular calcification (VC) is often associated with cardiovascular and metabolic diseases. However, the molecular mechanisms linking VC to these dise...

  43. Trim33 binds and silences a class of young endogenous retroviruses in the mouse testis OmicsDI

    ID: E-GEOD-68617

    Date Released: 12-01-2015

    Description: Transposable elements (TEs) have been active in the mammalian genome for hundreds of millions of years and each TE has had a distinct period of transp...

  44. MicroRNA screening in human pancreatic carcinoma cell lines OmicsDI

    ID: E-GEOD-74565

    Date Released: 12-02-2015

    Description: No reliable predictors of susceptibility to gemcitabine chemotherapy exist in pancreatic ductal adenocarcinoma. MicroRNAs (miR) are epigenetic gene re...

  45. Differential gene expression in human THP-1 cell line undifferentiated, 3 days or 8 days differentiated with phorbol myristate acetate (PMA) OmicsDI

    ID: E-GEOD-67264

    Date Released: 12-01-2015

    Description: We analysed the capacity of THP-1 cells (differentiated to macrophagoid cells) to recognize RNA sequences via pattern recognition receptors in vitro....

  46. Methyl-CpG-binding domain (MBD) sequencing of neuroblastoma tumors OmicsDI

    ID: E-GEOD-69279

    Date Released: 11-30-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  47. siRNA smart pool silencing of master regulators of Follicular Lymphoma transformation to DLBCL OmicsDI

    ID: E-GEOD-66714

    Date Released: 11-30-2015

    Description: Follicular lymphoma (FL) is the most common indolent subtype of non-Hodgkin’s lymphoma, with relatively long overall survival rate ranging from 6 to...

  48. Transcriptional profiling by array of multi-drug resistant HCT8 cell clones OmicsDI

    ID: E-MTAB-3780

    Date Released: 11-30-2015

    Description: We selected and characterized doxorubicin/5FU resistant HCT-8/R clones from sensitive parental cells, analyzing several parameters: cell cycle phase d...

  49. Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development OmicsDI

    ID: E-GEOD-70355

    Date Released: 12-01-2015

    Description: Early mouse development is accompanied by dynamic changes in chromatin modifications, including G9a-mediated histone H3 lysine 9 dimethylation (H3K9me...

  50. Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination (RNA-Se... OmicsDI

    ID: E-GEOD-74647

    Date Released: 12-01-2015

    Description: To quantitative analysis of transcriptome changes caused by lnc-OPC knockdown during OPC differentiation from NSC, lentivirus-based short hairpin RNAs...

  51. SOX15 governs a transcriptional program in human esophageal stratified epithelium and in a subset of esophageal adenocarcinomas OmicsDI

    ID: E-GEOD-62909

    Date Released: 12-01-2015

    Description: We identified spatially restricted transcription factors and found SOX15 expression confined to stratified esophageal epithelium, with attenuation in ...

  52. Optimized siRNAs with a minimal off-target effect facilitate the screening of essential genes in cancer cells OmicsDI

    ID: E-GEOD-62968

    Date Released: 08-19-2015

    Description: siRNAs with dN are a promising and easy approach to characterize essential genes by minimizing the off-target effect in cancer cells. mRNA profiles of...

  53. Differential gene expression in spinal cords from WT and transgenic RdRP mice during uninfected (baseline) conditions OmicsDI

    ID: E-GEOD-62756

    Date Released: 12-01-2015

    Description: Previously, we reported that mice made transgenic for a picornaviral RdRP – the 3Dpol protein of Theiler’s murine encephalomyelitis virus (TMEV) ...

  54. gene expression analysis in Pbx1; Emx1-cre mutant cortex at embryonic day OmicsDI

    ID: E-GEOD-73288

    Date Released: 12-01-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  55. RNA-seq of coding RNA from chemosensory organs from two strains of Sesamia nonagrioides OmicsDI

    ID: E-MTAB-2275

    Date Released: 12-01-2015

    Description: The aim of the experiment is to identify transcrits differentially expressed between two strains of Sesamia nonagrioides

  56. NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program OmicsDI

    ID: E-GEOD-65072

    Date Released: 12-02-2015

    Description: Cell fate specification relies on the action of critical transcription factors that become available at distinct stages of embryonic development. One ...

  57. Expression data from Arabidopsis wild type and ibr1 ibr3 ibr10 triple mutant seedlings root tip segments treated with indole-3-butyric acid (IBA) OmicsDI

    ID: E-GEOD-59426

    Date Released: 12-02-2015

    Description: The root cap-specific conversion of the auxin precursor indole-3-butyric acid (IBA) into the main auxin indole-3-acetic acid (IAA) generates a local a...

  58. Heterochromatin remodeling by CDK12 contributes to learning in Drosophila OmicsDI

    ID: E-GEOD-63011

    Date Released: 12-02-2015

    Description: We describe the epigenetic profiling of the H3K9me2 and HP1a in Drosophila third instar larvae before and after CDK12 depletion by RNA interference (R...

  59. IL-27 stimulation in Foxp3+ Tregs improves suppressive function and therapeutic efficacy OmicsDI

    ID: E-GEOD-63455

    Date Released: 12-03-2015

    Description: Foxp3 expressing regulatory T cells (Tregs) are the central regulator of immune homeostasis and tolerance. As it is believed that proper Treg function...

  60. Transcriptomic analysis of colonic epithelial cells in adult rats born with intra-uterine growth retardation. OmicsDI

    ID: E-GEOD-65051

    Date Released: 12-02-2015

    Description: The impact of intra-uterine growth retardation (IUGR) was analyzed on gene expression of the colonic epithelial cells from adults rats fed a standard ...

  61. Epigenetic profiling in CD4 and CD8 T cells from Graves’ disease patients reveals changes in genes associated with T cell receptor signaling [gene e... OmicsDI

    ID: E-GEOD-71956

    Date Released: 12-01-2015

    Description: In Graves’ disease (GD), a combination of genetic, epigenetic and environmental factors causes an autoimmune response to the thyroid gland, characte...

  62. The effect of growth rate on pyrazinamide activity in Mycobacterium tuberculosis; insights for early bactericidal activity OmicsDI

    ID: E-MTAB-4093

    Date Released: 12-02-2015

    Description: Background: Pyrazinamide (PZA) plays an essential part in the shortened 6-month tuberculosis (TB) treatment course due to its activity against slow-gr...

  63. Transcriptome profiling in knock-in mouse models of Huntington's disease [Cerebellum_miRNA] OmicsDI

    ID: E-GEOD-73505

    Date Released: 12-02-2015

    Description: Huntington's disease (HD) is an autosomal dominant neurodegenerative disorder that is characterized by motor, cognitive, and psychiatric alterations. ...

  64. Expression data from adult wistar female rat 5mm spinal cord tissue OmicsDI

    ID: E-GEOD-69334

    Date Released: 12-02-2015

    Description: We used microarray gene expression analyses to unveil the mechanisms underlying NT-3-chitosan-induced spinal cord regeneration. Complete transaction o...

  65. Dexamethasone-stimulated DNA methylation of the epigenetic clock CpGs in peripheral blood OmicsDI

    ID: E-GEOD-74414

    Date Released: 12-02-2015

    Description: Whole-genome DNA methylation (baseline and following GR-stimulation with 1.5 mg dexamethasone p.o.) were analysed to identify glucocorticoid receptor ...

  66. The evolution of genic piRNA cluster loci expression patterns OmicsDI

    ID: E-GEOD-62556

    Date Released: 12-03-2015

    Description: This study examines the conservation of Piwi-interacting RNA (piRNA) clusters that come from protein coding gene transcripts. By sequencing small RNA...

  67. CD13 and ROR2 permit isolation of highly enriched cardiac mesoderm from differentiating human embryonic stem cells OmicsDI

    ID: E-GEOD-74665

    Date Released: 12-01-2015

    Description: The resultant heat map demonstrates the maturation of CD13+/ROR2+ cells as they proceed through cardiac differentiation. RNA-seq analysis was preforme...

  68. Oncogenic deregulation of EZH2 as an opportunity for targeted therapy in lung cancer [ChIP-Seq] OmicsDI

    ID: E-GEOD-70045

    Date Released: 12-03-2015

    Description: As a master regulator of chromatin structure and function, the EZH2 lysine methyltransferase orchestrates transcriptional silencing of developmental g...

  69. Mitochondrial contagion induced by Parkin deficiency in Drosophila hearts and its containment by suppressing mitofusin; germline Parkin knockout mouse... OmicsDI

    ID: E-GEOD-74517

    Date Released: 12-03-2015

    Description: Dysfunctional Parkin-mediated mitophagic culling of senescent or damaged mitochondria is a major pathological process underlying Parkinson disease and...

  70. FOXJ3 ChIP-seq in a U2OS stable cell line OmicsDI

    ID: E-MTAB-3687

    Date Released: 12-03-2015

    Description: Chromatin immuno-precipitation using anti-Flag (Sigma) antibodies in a U2OS stable cell line. Paired-end R1 and R2 reads are provided, but the proces...

  71. Expression data from T-bet deficient megakaryoerythroid progenitor (MEP) cells OmicsDI

    ID: E-GEOD-68943

    Date Released: 12-03-2015

    Description: RNA was harvested from T-bet deficient MEP cells versus "wild type" C57BL/6 control MEP cells freshly harvested from bone marrow. 3 samples ...

  72. Oncogenic deregulation of EZH2 as an opportunity for targeted therapy in lung cancer [RNA-Seq] OmicsDI

    ID: E-GEOD-70046

    Date Released: 12-03-2015

    Description: As a master regulator of chromatin structure and function, the EZH2 lysine methyltransferase orchestrates transcriptional silencing of developmental g...

  73. Transcriptome profiling in knock-in mouse models of Huntington's disease [Hippocampus_mRNA] OmicsDI

    ID: E-GEOD-73503

    Date Released: 12-02-2015

    Description: Huntington's disease (HD) is an autosomal dominant neurodegenerative disorder that is characterized by motor, cognitive, and psychiatric alterations. ...

  74. microRNA screening in human pancreatic adenocarcinoma OmicsDI

    ID: E-GEOD-74574

    Date Released: 12-02-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  75. A cross species and multi-omics (including metabolomics) analysis in pancreatic neuroendocrine tumours (miRNA) OmicsDI

    ID: E-GEOD-73367

    Date Released: 12-03-2015

    Description: Pancreatic neuroendocrine tumor (PanNET) is relatively infrequent but is nevertheless metastatic. Seeking to extend a new paradigm of personalized med...

  76. miRNA-99 family diverges physiological cardiac hypertrophy to pathological cardiac hypertrophy OmicsDI

    ID: E-GEOD-73597

    Date Released: 12-03-2015

    Description: Purpose: The physiological cardiac hypertrophy is an adaptive condition that does not associate with myocyte cell death while pathological hypertrophy...

  77. Small nucleolar RNA and microRNA expression data from multiple sclerosis patients in relapse and remission. OmicsDI

    ID: E-GEOD-74579

    Date Released: 12-02-2015

    Description: Multiple sclerosis is a common inflammatory and degenerative disease that causes neurological disability. It affects young adults and its prevalence i...

  78. Transcription profiling of Arabidopsis Umkirch-1/Umkirch-3 hybrid plants grown at 23C and 16C in short day conditions OmicsDI

    ID: E-ATMX-24

    Date Released: 12-03-2015

    Description: Umkirch-1/Umkirch-3 hybrid plants and their parents were grown at 23SD and then shifted to 16SD for five days. 10 plants were pooled in each of three ...

  79. Hepatic expression of Sonic Hedgehog induces liver fibrosis and promotes hepatocarcinogenesis in a transgenic mouse model OmicsDI

    ID: E-GEOD-72758

    Date Released: 12-03-2015

    Description: The causative role of activated Hedgehog signaling in liver fibrosis was investigated in vivo. Using hydrodynamics-based transfection, a transgenic mo...

  80. RNAseq profiling of a lpp0148 mutant compared to its isogenic parent Legionella pneumophila strain Paris OmicsDI

    ID: E-MTAB-4094

    Date Released: 12-07-2015

    Description: Comparaison of the transcriptional profile of mutant of the lpp0148 gene and the parent strain Legionella pneumophila strain Paris. lpp0148 codes for ...

  81. Transcriptome sequencing of Nile tilapia hepatopancreas in different salinity OmicsDI

    ID: E-GEOD-67671

    Date Released: 12-03-2015

    Description: In this study, RNA-Seq was used to reveal the differences of molecular pathways in hepatopancreas of O. niloticus adapated to water with salinity of 8...

  82. Genome-wide mapping of Zea maize TSSs OmicsDI

    ID: E-GEOD-70251

    Date Released: 12-02-2015

    Description: Genome-wide mapping of the TSS in root and shoot from two maize lines B73 and Mo17 Genome-wide locations and dynamics of maize core promoters obtained...

  83. JMJD1C is required for the survival of acute myeloid leukemia by functioning as a co-activator for key transcription factors OmicsDI

    ID: E-GEOD-63486

    Date Released: 12-02-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  84. Microarray Analysis of Cohesin Mutant HSPC OmicsDI

    ID: E-GEOD-73224

    Date Released: 12-02-2015

    Description: Transciptome analysis of CD34+ enriched human HSPC lentivirally transduced with cohesin WT or mutant CD34+ enriched HSPCs from cord blood were transdu...

  85. Buccal epithelial gene expression in smoky and smokeless coal users OmicsDI

    ID: E-GEOD-64277

    Date Released: 12-02-2015

    Description: Exposure to indoor air pollution generated from the combustion of solid fuels is a major risk factor for a spectrum of cardiovascular and respiratory ...

  86. Combined transcriptomics classifier analysis reveals a set of adverse effect genes for use as potential endpoint in effect based screening OmicsDI

    ID: E-GEOD-70877

    Date Released: 12-01-2015

    Description: Environmental risk assessment relies heavily on the use of bioassays to assess the environmental impact of chemicals. Gene expression is gaining accep...

  87. Dual RNA-sequencing of nontypeable Haemophilus influenzae and host cell transcriptomes reveals new aspects of host-pathogen interface OmicsDI

    ID: E-GEOD-63900

    Date Released: 12-02-2015

    Description: Characterization of host-pathogen interactions is critical for the development of next-generation therapies and vaccines. Classical approaches involve...

  88. Genome-wide screen reveals rhythmic regulation of genes involved in odor processing in the olfactory epithelium OmicsDI

    ID: E-GEOD-69853

    Date Released: 12-02-2015

    Description: Odor discrimination behavior displays circadian fluctuations in mice indicating that mammalian olfactory function is under control of the circadian sy...

  89. Ethynylestradiol (EE2) effect on global gene expression in primary rainbow trout (Oncorhynchus mykiss) hepatocytes OmicsDI

    ID: E-GEOD-68335

    Date Released: 12-03-2015

    Description: To study short term (48h) hepatic transcriptional changes and identify potential modes of action in primary rainbow trout (Oncorhynchus mykiss) hepato...

  90. Micro-RNA expression signatures in breast cancer progression OmicsDI

    ID: E-MTAB-3759

    Date Released: 12-04-2015

    Description: miRNA expression in breast cancer progression, from normal breast tissue to DCIS to subtype-specific invasive breast carcinomas. Two separate datasets...

  91. Activated neutrophils are associated with pediatric cerebral malaria vasculopathy in Malawian children OmicsDI

    ID: E-GEOD-72058

    Date Released: 12-03-2015

    Description: We used microarrays to characterize the whole blood global gene expression profiles in 98 children with P. falciparum cerebral malaria We associated ...

  92. miRNA gene expression profiling of primary tumors and lung metastases using a mouse model of spontaneous metastatic mammary carcinoma OmicsDI

    ID: E-GEOD-63633

    Date Released: 12-02-2015

    Description: Expression profiling of a total of 566 miRNA genes and controls in 24 laser microdissected samples (normal lung parenchyma, normal mammary glands, lun...

  93. Expression analysis of Arabidopsis ein2 and bak1 mutants treated with the elicitors elf18 and Pep2. OmicsDI

    ID: E-GEOD-40354

    Date Released: 12-02-2015

    Description: Recognition of microbial patterns and host derived damage signals by host pattern recognition receptors is a key step in immune activation in multicel...

  94. RNA-seq analysis of control and Myc-induced U2OS cells OmicsDI

    ID: E-GEOD-66789

    Date Released: 12-02-2015

    Description: We used RNA-seq to examine the effect of Myc activation on U2OS cells transcriptome. We also examined these effects in the presence of Torin-1, an inh...

  95. Cytogenetic aberrations in Hepatocellular adenoma and carcinoma OmicsDI

    ID: E-GEOD-63100

    Date Released: 12-03-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  96. Risk Variants for Exfoliation Syndrome Modulate Antisense Promoter Activity Within the LOXL1 Locus OmicsDI

    ID: E-GEOD-66877

    Date Released: 08-19-2015

    Description: The goal of this study was to identify functional variants that play a role in exfoliation syndrome (XFS) pathogenesis. We sequenced the entire LOXL1 ...

  97. PANCR, the PITX2 adjacent noncoding RNA, is specifically expressed in human left atria and regulates PITX2c expression OmicsDI

    ID: E-GEOD-67844

    Date Released: 08-19-2015

    Description: Purpose: Common genetic variation at chromosome 4q25 lead to the strongest locus associated with atrial fibrillation (AF), the most frequent arrhythmi...

  98. Pathway-based integrative analysis reveals a key role for the hexosamine biosynthetic pathway in castrate resistant prostate cancer with therapeutic i... OmicsDI

    ID: E-GEOD-67537

    Date Released: 08-19-2015

    Description: The development and progression of castrate resistant prostate cancer (CRPC), a lethal disease, is thought to be driven by multiple events. A hallmark...

  99. Gene expression analysis of directly converted brown adipocytes (dBAs). [human] OmicsDI

    ID: E-GEOD-56633

    Date Released: 08-19-2015

    Description: Comparasion of each cell mRNA expression pattern Human fibroblasts were directly converted into brown adipocytes (dBAs) by transducing some transcript...

  100. RNA-seq influenza infected B6 & D2 mice OmicsDI

    ID: E-GEOD-66040

    Date Released: 08-19-2015

    Description: The host response to influenza A infections is strongly influenced by host genetic factors. Animal models of genetically diverse mouse strains are wel...


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