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  1. Hepatic gene expression of HCV related Hepatocellular carcinoma and non-cancerous tissue with Il28B rs8099917 TT genotype and TG/GG genotype OmicsDI

    ID: E-GEOD-41804

    Date Released: 07-29-2015

    Description: IL28B genotype was shown to be associated with treatment outcome of antiviral thearpy for HCV infection. We tried to clarify the molecular feature tha...

  2. Gene expression profile of cell lines 2106T, H1975 and MeWo after knockdown of PAEP. OmicsDI

    ID: E-GEOD-60888

    Date Released: 07-28-2015

    Description: Gene expression profile was analyzed after knockdown of PAEP in lung cancer cell lines 2106T and H1975 as well as in skin cancer cell line MeWo. The a...

  3. Transcription profiling of testis from Sertoli cell-selective androgen receptor knockout mice and wild type mice to unravel the molecular mechanisms m... OmicsDI

    ID: E-GEOD-2259

    Date Released: 07-28-2015

    Description: To unravel the molecular mechanisms mediating the effects of androgens on spermatogenesis, testicular gene expression was compared in mice with a Sert...

  4. The acetylome regulators Hdac1 and Hdac2 differently modulate intestinal epithelial cell dependent homeostatic responses in experimental colitis OmicsDI

    ID: E-GEOD-54785

    Date Released: 07-31-2015

    Description: Histone deacetylases (Hdac) remove acetyl groups from proteins, influencing global and specific gene expression. Hdacs control inflammation, as shown ...

  5. Gene Expression Profiling in 45X Turner Syndrome patients OmicsDI

    ID: E-GEOD-46687

    Date Released: 07-27-2015

    Description: Turner Syndrome (TS) is the most common X chromosome aneuploidy disorder in female, and the predominant karyotype is 45X, a complete loss of the secon...

  6. Gene expression from normal and Msi2 KO mouse LSK cells OmicsDI

    ID: E-GEOD-53385

    Date Released: 07-30-2015

    Description: Hematopoietic stem and progenitor cells (Lineagelo ScaI+ c-Kit+) were sorted 4 weeks post pIpC injection. RNA was extracted using TRIZOL and RNEASY RN...

  7. MicroRNA expression data from human coronary artery endothelial cells treated with HDL components OmicsDI

    ID: E-GEOD-53315

    Date Released: 07-30-2015

    Description: We quantified differential microRNA (miRNA) expression in human coronary artery cells treated with native HDL, reconstituted HDL, lipid-free apolipopr...

  8. Expression data from human coronary artery endothelial cells treated with HDL components OmicsDI

    ID: E-GEOD-53201

    Date Released: 07-30-2015

    Description: We quantified differential gene (mRNA) expression in human coronary artery cells treated with native HDL, reconstituted HDL, lipid-free apolipoprotein...

  9. Gene expression profiling in mice overexpressing human wild type (WT) keratin 8 (K8) or K8 variants (G62C and R341H). OmicsDI

    ID: E-GEOD-60780

    Date Released: 07-28-2015

    Description: 3 months old untreated male/female animals were used in the experiment. We used microarray analysis to determine differential gene expression in mice ...

  10. Transcription profiling of human adult postmortem brain tissue from Down syndrome and healthy control subjects OmicsDI

    ID: E-GEOD-5390

    Date Released: 07-27-2015

    Description: Down syndrome (DS) is the result of trisomy chromosome 21 but the mechanisms by which the genotype leads to the characteristic disease phenotype are u...

  11. Genotyping by array of anaplastic oligodendroglioma OmicsDI

    ID: E-MTAB-3457

    Date Released: 07-24-2015

    Description: A Cartes d'Identite des Tumeurs (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net: Anaplastic oligodendrogli...

  12. Expression data from polarized macrophages: effect of p53 OmicsDI

    ID: E-GEOD-53321

    Date Released: 07-30-2015

    Description: p53 is critically important in preventing oncogenesis but its role in non-cancer biology remains unclear. Macrophages exist as two subtypes (M1 and M...

  13. Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis OmicsDI

    ID: E-GEOD-14580

    Date Released: 07-24-2015

    Description: Infliximab, an anti-TNF-alpha monoclonal antibody, is an effective treatment for ulcerative colitis (UC) with over 60% of patients responding to treat...

  14. Effects of exercise on gene expression level in human monocytes OmicsDI

    ID: E-GEOD-51835

    Date Released: 07-29-2015

    Description: We tested the hypothesis on the mechanisms responsible for the early control of monocytes function by identifying a discrete set of genes in circulati...

  15. 5Aza and TSA treatment of MCF7 cells (RNA-seq) OmicsDI

    ID: E-MTAB-3794

    Date Released: 07-31-2015

    Description: The goal of this study is to identify the gene expression changes caused by exposure of to the DNMT inhibitor 5-aza-2'-deoxycytidine (5Aza) and HDAC i...

  16. The oncofusion protein FUS-ERG targets key hematopoietic regulators and modulates the all-trans retinoic acid signaling pathway in t(16;21) acute myel... OmicsDI

    ID: E-GEOD-60477

    Date Released: 06-27-2015

    Description: Fusion proteins involving the ETS factor ERG have been associated with multiple cancers such as Ewing's sarcoma and prostate cancer. In acute myeloid ...

  17. The transcriptome of TRPV1-positive sensory neurons revealed by subgroup-elimination transcriptomics OmicsDI

    ID: E-MTAB-2789

    Date Released: 07-02-2015

    Description: We developed an approach to rapidly eliminate the subgroup of sensory neurons expressing the heat-gated cation channel TRPV1 from dissociated rat sens...

  18. Hematopoietic cells-derived Jnk1 is crucial for chronic inflammation and carcinogenesis in an experimental model of liver injury OmicsDI

    ID: E-GEOD-59601

    Date Released: 06-27-2015

    Description: Chronic liver injury triggers complications such as liver fibrosis and hepatocellular carcinoma (HCC), which are associated with alterations in distin...

  19. Transcription profiling by array of mammary epithelium to identify genes which may be important for regulation of mammary stem cell function OmicsDI

    ID: E-MTAB-2741

    Date Released: 06-30-2015

    Description: The aim of the experiment was to produce a mammary stem cell gene signature based on very high purity isolation of mouse mammary stem cells. Gene expr...

  20. Small molecule inhibition of ERK dimerization prevents tumorigenesis by Ras-ERK pathway oncogenes OmicsDI

    ID: E-GEOD-68230

    Date Released: 07-03-2015

    Description: About 50% of human malignancies exhibit unregulated signalling through the Ras-ERK1/2 (ERK) pathway, as a consequence of activating mutations in membe...

  21. Proton Irradiation Impacts Age Driven Modulations of Cancer Progression Influenced by Immune System Transcriptome Modifications from Splenic Tissue OmicsDI

    ID: E-GEOD-67243

    Date Released: 06-27-2015

    Description: Age plays a crucial role in the interplay between tumor and host; with further perturbations induced by irradiation. Proton irradiation on tumors indu...

  22. Gene expression in the whole brains of two spontaneously hypertensive rat strains at 3 and 6 weeks of age OmicsDI

    ID: E-GEOD-41452

    Date Released: 07-06-2015

    Description: We examined gene expression profiles in the rat whole brains using genome-wide microarray technology, and determined gene expression profiles in 3 rat...

  23. RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from lizard OmicsDI

    ID: E-MTAB-3727

    Date Released: 07-07-2015

    Description: This experiment contains the Anolis carolinensis subset of data from the experiment E-GEOD-41338 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD...

  24. Targets of the bHLH transcription factor, Sage OmicsDI

    ID: E-GEOD-40963

    Date Released: 07-06-2015

    Description: FoxA transcription factors play major roles in organ-specific gene expression. How FoxA proteins achieve specificity is unclear, given their broad exp...

  25. Genome-wide maps of Runx3 bound regions in splenic NK cells activated in vivo with IL-15 OmicsDI

    ID: E-GEOD-50126

    Date Released: 07-08-2015

    Description: ChIP-seq was conducted using freshly isolated splenic WT NK cells from IL-15/Ra treated mice with anti-Runx3 antibody (Ab) and non-immune serum (NIS) ...

  26. Gene expression in post cardiac surgery acute kidney injury OmicsDI

    ID: E-GEOD-44782

    Date Released: 07-09-2015

    Description: To determine the changes in intra-renal gene expression in a novel large animal model of post Cardiopulmonary Bypass (CPB) acute kidney injury, we col...

  27. Expression data from C2C12 myotubes infected with RML prions OmicsDI

    ID: E-GEOD-44563

    Date Released: 07-09-2015

    Description: Prion infection in animals results in neurodegeneration and eventually death. To examine the cellular impact of Prion disease, we profiled non-prolife...

  28. The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis OmicsDI

    ID: E-GEOD-70144

    Date Released: 06-27-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  29. DIRECT CONVERSION OF FIBROBLASTS INTO FUNCTIONAL ASTROCYTES BY DEFINED TRANSCRIPTION FACTORS OmicsDI

    ID: E-GEOD-59018

    Date Released: 06-27-2015

    Description: Direct cell reprogramming has enabled the direct conversion of skin fibroblasts into functional neurons and oligodendrocytes using a minimal set of ce...

  30. Gene expression patterns and TP53 mutations are associated with HPV RNA status, lymph node metastasis, and survival in head and neck cancer OmicsDI

    ID: E-GEOD-65858

    Date Released: 06-27-2015

    Description: A growing proportion of head and neck squamous cell carcinomas (HNSCC) is associated with the human papilloma virus (HPV), particularly HPV16. We comp...

  31. Transcription profiling of pigment cells in the tunicate Ciona intestinalis to study pigment cell specification within Central Nervous System OmicsDI

    ID: E-MTAB-2759

    Date Released: 07-02-2015

    Description: Its known that FGF signaling induces pigment cell precursors formation. We perturbed the endogenous FGF signaling cascade by using a dominant-negative...

  32. Transcription profiling by array of intestinal tissue from Drosophila w1118 and p38c null mutation flies OmicsDI

    ID: E-MTAB-2740

    Date Released: 07-02-2015

    Description: We investigated changes in transcriptome of Drosophila female guts in wild-type (w1118) flies and p38c mutant flies (p38c7B1) aged 3-5 days.

  33. Expression data from E18.5 Igf1 -/- (homozygous mutant) and Igf1+/+ (normal wild type control) mouse lungs OmicsDI

    ID: E-GEOD-17157

    Date Released: 07-02-2015

    Description: Insight into the role of Insulin-like Growth Factor (IGF) in development of lungs has come from the study of genetically modified mice. IGF1 is a key ...

  34. Elodea nuttallii transcriptomic response to mercury, monomethyl-mercury, copper and UV-B radiation OmicsDI

    ID: E-MTAB-2557

    Date Released: 06-29-2015

    Description: The mechanisms of metal accumulation and toxicity in primary producers are not well understood. In a previous study (deposited in ArrayExpress archive...

  35. RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from frog OmicsDI

    ID: E-MTAB-3726

    Date Released: 07-07-2015

    Description: This experiment contains the Xenopus tropicalis subset of data from the experiment E-GEOD-41338 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-...

  36. Gene expression profiling of human Ig class switched memory B cells OmicsDI

    ID: E-MTAB-3637

    Date Released: 07-03-2015

    Description: We purified 4 Ig class switched memory B cell populations from human adults to compare their gene expression profiles with each other and with those o...

  37. Transcriptomic profiling of chicken adipose tissue of domestic chickens OmicsDI

    ID: E-GEOD-44394

    Date Released: 07-09-2015

    Description: Domestic chicken has been intensively studied because of its role as an efficient source of lean meat. However, commercial broilers resulting from gen...

  38. Expression data from muscle transcriptome of pigs on low protein and control diets OmicsDI

    ID: E-GEOD-44326

    Date Released: 07-08-2015

    Description: The ratio of energy to protein in the finishing diet of growing pigs can impact on IMF content with consequences for pork quality. The objective of th...

  39. Transcriptional landscape of transkingdom communication between Candida albicans and Streptococcus gordonii OmicsDI

    ID: E-GEOD-68477

    Date Released: 06-27-2015

    Description: Recent studies have shown that the transcriptional landscape of the pleiomorphic fungus Candida albicans is highly dependent upon growth conditions. H...

  40. Hepatic gene expression profiling in AHNAK KO mice OmicsDI

    ID: E-GEOD-70119

    Date Released: 06-27-2015

    Description: To identify molecular mechanism underlying the protection from diet-induced hepatic steatosis in AHNAK deficiency mice, we examined microarray analysi...

  41. Expression data from rosiglitazone treated, rosiglitazone withdrawal and untreated control Zucker Diabetic Fatty rats. OmicsDI

    ID: E-GEOD-30147

    Date Released: 07-02-2015

    Description: Insulin resistance and islet failure are the two etiological roots of type 2 diabetes mellitus, and understanding global islet gene expression may pro...

  42. Wnt/b-catenin signaling regulates sequential fate decisions of murine cortical precursor cells OmicsDI

    ID: E-GEOD-70134

    Date Released: 06-27-2015

    Description: In order to compare expression changes upon Wnt/b-catenin signaling inactivation in the forebrain of mouse embryos, we have isolated dorso-medial pall...

  43. Transcription profiling by array of human HEK293-M2 cells to identify human ORFs conferring resistance to various drug treatments OmicsDI

    ID: E-MTAB-2493

    Date Released: 06-29-2015

    Description: Identification of human ORFs conferring resistance to various drug treatments when overexpressed into HEK293-M2, assessed by microarrays

  44. Brown Adipose Tissue Harbors a distinct subpopulation of regulatory T cells OmicsDI

    ID: E-GEOD-64909

    Date Released: 06-27-2015

    Description: Regulatory T (Treg) cells are critical determinants of both immune responses and metabolic control. Here we show that systemic ablation of Treg cells ...

  45. Expression profiling in four human bladder cancer cell lines OmicsDI

    ID: E-MTAB-2610

    Date Released: 06-29-2015

    Description: To identify miRNA-target interactions that are important in bladder cancer metastasis, we profiled miRNA and mRNA expression in poorly metastatic cell...

  46. Nuclear Factor κB inducing kinase activation as a mechanism of pancreatic beta cell failure in obesity OmicsDI

    ID: E-GEOD-68317

    Date Released: 06-27-2015

    Description: The NF-κB pathway is a master regulator of inflammatory processes and is implicated in insulin resistance and pancreatic beta cell dysfunction in the...

  47. Isolation and Characterization of Clonal Adult Human Brown Adipocytes OmicsDI

    ID: E-MTAB-2602

    Date Released: 06-29-2015

    Description: Brown adipose tissue (BAT) evolved in mammals as a natural defence system against hypothermia and obesity. While existence of BAT in adult humans has ...

  48. RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from mouse OmicsDI

    ID: E-MTAB-3725

    Date Released: 07-07-2015

    Description: This experiment contains the Mus musculus subset of data from the experiment E-GEOD-41338 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41338/...

  49. Klf5 controls bone marrow homing of stem cells and progenitors through Rab5-mediated membrane Beta1/Beta2-integrin expression OmicsDI

    ID: E-GEOD-43806

    Date Released: 07-08-2015

    Description: The Kruppel-like factor 5 (Klf5) regulates pluripotent stem cell self-renewal but its role in somatic stem cells is unknown. Klf5 deficient hematopoie...

  50. Genetic profiling of SNPs in juvenile myelomonolytic leukemia OmicsDI

    ID: E-MTAB-3729

    Date Released: 07-07-2015

    Description: Dectection of somatic copy number variations from Affymetrix 6.0 SNP array

  51. Identification of TNFα-induced genes that are IRAK1BP1 dependent OmicsDI

    ID: E-GEOD-44146

    Date Released: 07-08-2015

    Description: Tumor Necrosis Factor-alpha (TNFα) is a potent inducer of NF-κB dependent gene expression and IRAK1BP1 is required for TNFα-induced NF-κB activity...

  52. Activating CD8 T cell clones via the T cell receptor complex in the absence and presence of cyclosporine A OmicsDI

    ID: E-GEOD-46122

    Date Released: 07-09-2015

    Description: Comparison of a cyclosporine-resistant murine CD8 T cell clone to a cyclosporine-sensitive murine T cell clone during activation (CSA = Cyclosporine A...

  53. Transcription profiling by array of first leaf pair of amiPPD mutant and wild type Arabidopsis plants OmicsDI

    ID: E-MTAB-3045

    Date Released: 07-07-2015

    Description: To obtain more insight into the molecular changes associated with PPD down-regulation, RNA was extracted from the first leaf pair of ami-ppd and wild-...

  54. Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells [Illumina arrays] OmicsDI

    ID: E-GEOD-38913

    Date Released: 06-27-2015

    Description: We explored the relationship between the distribution of DNase I hypersensitive site(DHSs) and levels of gene expression. Expression values from 5 to ...

  55. Gene expression from H69M versus H69 SCLC cell lines OmicsDI

    ID: E-GEOD-45120

    Date Released: 07-06-2015

    Description: H69M cells derive from H69 small cell lung cancer cells subjected to prolonged treatment with HGF. Among the whole population of cells, a subset of mo...

  56. Methylation microarray studies highlight PDGFA expression as a factor in biliary atresia OmicsDI

    ID: E-GEOD-69948

    Date Released: 06-19-2015

    Description: Biliary atresia (BA) is a progressive fibro-inflammatory disorder that is the leading indication for liver transplantation in children. Although ther...

  57. Wnt directs the endosomal flux of LDL-derived cholesterol and lipid droplet homeostasis OmicsDI

    ID: E-MTAB-2872

    Date Released: 06-20-2015

    Description: The Wnt pathway, which controls crucial steps of the development and differentiation programs, has been proposed to influence lipid storage and homeos...

  58. Differential miRNA expression in Cells and Matrix Vesicles in Vascular Smooth Muscle Cells from Rats with Kidney Disease OmicsDI

    ID: E-GEOD-68913

    Date Released: 06-21-2015

    Description: Vascular calcification is a complex process and has been associated with aging, diabetes, chronic kidney disease (CKD). Although there have been seve...

  59. Genome wide transcriptomic analysis of sarcomatoid (E/S), rhabdoid (E/R) and non-sarcomatoid (E*) clear cell renal cell carcinoma OmicsDI

    ID: E-GEOD-59264

    Date Released: 06-19-2015

    Description: An analysis of the biphasic epithelioid (E-) and sarcomatoid(S-) components of sarcomatoid RCC and advanced stage non-sarcomatoid RCC (E*) showed that...

  60. Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity [RNA-Seq] OmicsDI

    ID: E-GEOD-31234

    Date Released: 06-19-2015

    Description: T cell development comprises a stepwise process of commitment from a multipotent precursor. To define molecular mechanisms controlling this progressio...

  61. Gene expression of SUM159 breast cancer cell line expressing microRNA--203 OmicsDI

    ID: E-GEOD-50697

    Date Released: 06-18-2015

    Description: Determine the effect of miR-203 expression on the global mRNA expression in mesenchymal breast cancer cell line. Generate control (pBabe puro) and miR...

  62. The C-terminal region of Xpc is dispensable for the transcriptional activity of Oct3/4 in mouse embryonic stem cells OmicsDI

    ID: E-GEOD-69640

    Date Released: 06-13-2015

    Description: The transcription factor Oct3/4 is essential to maintain pluripotency in mouse embryonic stem (ES) cells. It was reported that the Xpc DNA repair comp...

  63. Transcription profiling by array of several human solid tumor cell lines (glioblastoma, breast carcinoma and lung carcinoma) and T-cell leukemia cells... OmicsDI

    ID: E-MTAB-1900

    Date Released: 06-19-2015

    Description: We have studied the anti-cancer activities of antofine N-oxide isolated and purified from the medicinal plant Cynanchum vincetoxicum. The compound dis...

  64. Epression profiling of miR-142 deficient CD19+ B cells OmicsDI

    ID: E-GEOD-61919

    Date Released: 06-21-2015

    Description: miR-142 gene is specifically and abundantly expressed in hematopoietic cells. Mice that lack this miRNA gene develop immunodeficiency and display alte...

  65. Expression profiling of HeLa cell line treated with CDK9 inhibitor OmicsDI

    ID: E-GEOD-60952

    Date Released: 06-20-2015

    Description: CDK9 is the kinase subunit of P-TEFb that enables RNA polymerase (Pol) II to transit from promoter-proximal pausing to productive elongation. Although...

  66. Altered epigenetic programming links intestinal inflammation to colon cancer (RNA-seq) OmicsDI

    ID: E-GEOD-57533

    Date Released: 06-20-2015

    Description: This study uses whole-transcriptome sequencing to characterize the transcriptomes of the AOM/DSS mouse model. In this model, mice are treated with dex...

  67. Specificity, propagation and memory of pericentric heterochromatin in mouse fibroblasts: H3S10p OmicsDI

    ID: E-GEOD-67133

    Date Released: 06-20-2015

    Description: ChIP-seq of H3S10p in synchronized and asynchronous ESCs and RNA-seq of ESCs after inhibition of AURKB ChIP-seq of H3S10p and RNA-seq for ESCs treated...

  68. Pilot KOMP knockout mouse strains OmicsDI

    ID: E-MTAB-3662

    Date Released: 06-16-2015

    Description: This is a test case of D. West's RNA-seq from KOMP2 mutant strains

  69. The cohesin loader Scc2 regulates key regulatory genes critical for development OmicsDI

    ID: E-GEOD-55316

    Date Released: 06-21-2015

    Description: The evolutionarily conserved cohesin complex is crucial for holding sister chromatids together from the time of DNA replication until their segregatio...

  70. Effect of MEG3 on p53 target genes in hepatoma cells OmicsDI

    ID: E-GEOD-69916

    Date Released: 06-20-2015

    Description: Maternally Expressed Gene 3 (MEG3) encodes a lncRNA which is suggested to function as a tumor suppressor. MEG3 functions as a tumor suppressor in hepa...

  71. Identification of lineage-specific cis-regulatory modules associated with variation in transcription factor binding and chromatin activity using Ornst... OmicsDI

    ID: E-GEOD-59706

    Date Released: 06-20-2015

    Description: Whole-chromatin profile (FAIRE-seq) in three Drosophila species (D. melanogaster, D. pseudoobscura and D. virilis) in eye-antennal imaginal discs at t...

  72. Effect of chronic lymphocytic leukemia-derived exosomes on human bone marrow mesenchymal stem cells OmicsDI

    ID: E-MTAB-2765

    Date Released: 06-18-2015

    Description: Transcription profiling of human bone marrow mesenchymal stem cells treated with exosomes isolated from chronic lymphocytic leukemia cell line MEC-1 s...

  73. Expression analysis of big neurospheres generated in vitro OmicsDI

    ID: E-GEOD-67304

    Date Released: 06-21-2015

    Description: Expression analysis of neurospheres generated in vitro treated by potassium chloride (KCl) and norepinephrine Neurospheres generated in vitro were tre...

  74. Expression data of human neuroblastoma IMR32 cells treated with the DHODH inhibitor Teriflunomide [118 ᅡᄉM] OmicsDI

    ID: E-GEOD-67338

    Date Released: 06-18-2015

    Description: Neuroblastoma is an embryonal tumor which originates from neural crest progenitor cells that fail to differentiate along their predefined route to sym...

  75. Gene expression analysis of induced renal epithelial cells OmicsDI

    ID: E-MTAB-3648

    Date Released: 06-15-2015

    Description: Induced renal epithelial cells were obtained by direct reprogramming of murine fibroblasts. Their expression profile was compared to control fibroblas...

  76. Transcription profiling by array of Zhonghua 11 rice caryopses mutant for gif1 OmicsDI

    ID: E-GEOD-9498

    Date Released: 04-30-2015

    Description: To reveal the underlying molecular mechanism of Gif1 action in the control of grain filling and yield improvement, we performed transcriptional profil...

  77. Transcription profiling by array of hippocampus from transgenic mice expressing a Ca2+-insensitive/CREB-independent dominant active mutant DREAM OmicsDI

    ID: E-GEOD-17844

    Date Released: 04-29-2015

    Description: Changes in nuclear Ca2+ homeostasis activate specific gene expression programs and are central to the acquisition and the plastic storage of memories....

  78. Transcription profiling by array of liver from obese mice after intermittent hypoxia OmicsDI

    ID: E-GEOD-1873

    Date Released: 04-29-2015

    Description: All animals were kept in a controlled environment (22-24 °C with a 12 h : 12 h light : dark cycle; lights on at 09.00) on a standard chow diet with f...

  79. Transcriptional profiling after inhibition of cellulose synthesis by thaxtomin and isoxaben in Arabidopsis thaliana suspension cells OmicsDI

    ID: E-GEOD-17824

    Date Released: 04-29-2015

    Description: Transcriptional profiling after inhibition of cellulose synthesis by thaxtomin A and isoxaben in Arabidopsis thaliana suspension cells; Perturbations ...

  80. Transcription profiling by array of Arabidopsis with RNAi-mediated knockdown of AtERF73/HRE1 after growth in hypoxic conditions OmicsDI

    ID: E-GEOD-27475

    Date Released: 04-30-2015

    Description: To mimic natural flooding conditions, we have adopted an “open system” treatment, in which only roots are subjected to hypoxia treatment. Using m...

  81. TGF-beta and BMP mediated gene expression in cultured sclerotome. OmicsDI

    ID: E-GEOD-18648

    Date Released: 04-29-2015

    Description: Very little is known about how intervertebral disc (IVD) is formed or maintained. Members of the TGF-beta superfamily are secreted signaling proteins ...

  82. Germline unbalanced translocations arise from diverse mutational mechanisms including chromothripsis OmicsDI

    ID: E-GEOD-68019

    Date Released: 04-27-2015

    Description: Unbalanced translocations are a relatively common type of copy number variation and are a major contributor to neurodevelopmental disorders. We analyz...

  83. Fucose-mediated transcriptional activation of the fcs operon by FcsR in Streptococcus pneumoniae OmicsDI

    ID: E-GEOD-65673

    Date Released: 04-27-2015

    Description: In this study, we explore the impact of fucose on the transcriptome of S. pneumoniae D39. The expression of various genes and operons, including the f...

  84. Transcription profiling by array of Arabidopsis seedlings mutant for pif1 OmicsDI

    ID: E-GEOD-11594

    Date Released: 04-29-2015

    Description: Arabidopsis bHLH transcription factor PIF1 has been shown function as a negative regulator of Chlorophyll biosynthesis. Pif1-2 mutant accumulate more ...

  85. Transcription profiling by array of prostate from AKT transgenic mice treated with RAD001. OmicsDI

    ID: E-GEOD-1413

    Date Released: 04-29-2015

    Description: Transgenic (Probasin driven Myr-AKT)or wild-type littermates were treated with RAD001 or placebo and sacrificed at 12 and 48 hours following the begin...

  86. Transcription profiling by array of Arabidopsis expressing genimivirus C2 under the control of the 35S promoter after treatment with methyl jasmonate OmicsDI

    ID: E-GEOD-18667

    Date Released: 04-29-2015

    Description: affy_meja_arabidopsis - We want to determine if the presence of C2 modifies the cell transcriptome and its response to methyl jasmonate. Comparison of...

  87. Transcription profiling by array of mouse soft tissue sarcoma samples induced by conditional mutations of Kras and p53 against healthy muscles from mi... OmicsDI

    ID: E-GEOD-16779

    Date Released: 04-29-2015

    Description: Analysis of undifferentiated pleomorphic sarcoma/malignant fibrous histiocytoma-like tumors from LSL-KrasG12D, p53Fl/Fl mouse model of soft tissue sar...

  88. Activation of Notch1 and Notch3 Skews Human Airway Basal Cell Differentiation Toward a Secretory Pathway OmicsDI

    ID: E-GEOD-53537

    Date Released: 04-18-2015

    Description: Airway basal cells (BC) function as progenitor cells capable of differentiating into ciliated and secretory cells to replenish the airway epithelium d...

  89. mRNA profiling reveals determinants of trastuzumab efficiency in HER2-positive breast cancer OmicsDI

    ID: E-GEOD-55005

    Date Released: 04-27-2015

    Description: The intention was to detect genes that are determining trastuzumab efficiency in HER2-positive breast cancer cell lines with different resistance phen...

  90. Gene expression in the GWAT of ob/ob and ob/ob/Fsp27-/- mice OmicsDI

    ID: E-GEOD-59807

    Date Released: 04-27-2015

    Description: GWAT store most of the TAG in mice, ob/ob mice is an obese mice. Ob/ob/Fsp27-/- mice are lean when compared with ob/ob mice. The GWAT weight was drama...

  91. Induced pluripotent stem cell-derived neurons from a sporadic Alzheimer disease donor as a model for investigating disease mechanisms OmicsDI

    ID: E-GEOD-42492

    Date Released: 04-27-2015

    Description: Gene expression analysis of control fibroblasts (NFH2), one AD-derived fibroblasts (NFH-46), NFH2-derived control-iPS cells (OiPS3, OiPS6), NFH46-deri...

  92. Transcriptional response of Drosophila cells to FHV infection (infection experiment) OmicsDI

    ID: E-GEOD-15466

    Date Released: 04-29-2015

    Description: Virus infections induce cellular gene up and down regulation, and these changes often provide clues to cellular pathways utilized by viruses. We used ...

  93. Transcription profiling by array of kidneys from ERRa knock out mice. OmicsDI

    ID: E-GEOD-16623

    Date Released: 04-29-2015

    Description: Estrogen-related receptor (ERR) alpha is an orphan nuclear receptor highly expressed in the kidneys. ERRalpha is implicated in renal sodium and potass...

  94. Transcription profiling by array of Arabidopsis expressing ERF104 under the control of the 35S promoter, mutant for erf104 or mpk6 OmicsDI

    ID: E-GEOD-11807

    Date Released: 04-29-2015

    Description: Despite their importance, plant MAP kinase targets are still poorly elucidated. Here, the specific in vivo interaction of an ethylene response factor ...

  95. Role of LDB1 in the transition from chromatin looping to transcription activation OmicsDI

    ID: E-GEOD-54549

    Date Released: 04-30-2015

    Description: Many questions remain about how close association of genes and distant enhancers occurs and how this is linked to transcription activation. In erythro...

  96. Expression in HepG2 cells with overexpression of TMPRSS6 or its mutant version. OmicsDI

    ID: E-GEOD-10591

    Date Released: 04-29-2015

    Description: TMPRSS6 is a type II transmembrane serine protease and is revealed by our work to be part of a low-iron sensing pathway. When animal gets iron deficie...

  97. Transcription profiling by array of human mammary epithelial cells infected with a recombinant adenoviral vector expressing a mutated HER2 inactivated... OmicsDI

    ID: E-GEOD-13274

    Date Released: 04-29-2015

    Description: As an oncogene, use of HER2 vaccines in humans requires the development of HER2 immunotherapies with maximal immunologic potential, but minimal oncolo...

  98. Combined MYC and TP53 defects emerge at medulloblastoma relapse and define rapidly progressive, therapeutically targetable disease [gene expression] OmicsDI

    ID: E-GEOD-62625

    Date Released: 04-27-2015

    Description: We undertook a comprehensive clinical and biological investigation of serial medulloblastoma biopsies obtained at diagnosis and relapse. Combined MYC ...

  99. Gene expression of hepatocyte cell line (HepG2) treated with H2O2 to induce senescence relative to control untreated cells OmicsDI

    ID: E-GEOD-47739

    Date Released: 04-30-2015

    Description: We used microarrays to identify a transcriptional signature of oxidative stress induced senescence in a hepatocyte cell line (HepG2) by globally asses...

  100. Transcription profiling by array of Arabidopsis mutant for pil5 after exposure to red and far-red light or far-red light only OmicsDI

    ID: E-GEOD-14374

    Date Released: 04-29-2015

    Description: PIL5 is a key negative regulator of phytochrome mediated seed germination and PIL5 protein is degraded by red light irradiation through phytochrome. T...


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