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  1. Genome-wide expression profile of livers from mice fed HFD,SO-HFD or Viv chow [RNAseq] OmicsDI

    ID: E-GEOD-68360

    Date Released: 09-06-2015

    Description: Purpose: Aim of the study is to identify changes in hepatic gene expression induced by either a 40kcal% coconut oil rich high fat diet (HFD), a 40kcal...

  2. daf-16/FoxO isoform-specific deletion mutants OmicsDI

    ID: E-GEOD-72426

    Date Released: 09-06-2015

    Description: FoxO transcription factors promote longevity across taxa. How they do so is poorly understood. In the nematode Caenorhabditis elegans, the A- and F-is...

  3. miRNA expression profiling of Human Myeloma Cell Lines Pre- and Post- 5'azacytidine Treatment OmicsDI

    ID: E-GEOD-53850

    Date Released: 09-06-2015

    Description: We performed genome-wide miRNA expression profiling (MEP) of a panel of four human Myeloma cell lines treated with 5'azacytidine compared to control (...

  4. Transcriptomic effects of Capridine on the acute promyelocytic leukemia HL-60 cell line OmicsDI

    ID: E-GEOD-72415

    Date Released: 09-06-2015

    Description: We used Agilent human gene expression arrays to test whether Capridine, a chemotherapeutic agent with specificity towards prostate cancer, deregulates...

  5. Sternal cartilage microarray (WT vs. TIMPless) OmicsDI

    ID: E-GEOD-60451

    Date Released: 09-06-2015

    Description: Timps are natural metalloproteinase inhibitors that direct the cell microenvironment in health and disease, yet the essential requirement of this gene...

  6. Transcription profiling by array of Nrf2 knockout mice exposed to cigarette smoke OmicsDI

    ID: E-GEOD-18344

    Date Released: 09-07-2015

    Description: Cigarette smoke (CS) imposes a strong oxidative burden on exposed tissues resulting in a severely disturbed oxidant/antioxidant balance, which in the ...

  7. Analysis of gene expression changes in KPT330-treated HMLE cells transduced to stably overexpress SNAI1 OmicsDI

    ID: E-GEOD-69326

    Date Released: 09-06-2015

    Description: HMLE-SNAIL cell cultures were treated with KPT330 drug (KPT, 150 nanomolar) or vehicle (DMSO) for 24 hours, in parallel quadruplicates. KPT-330 is an...

  8. Global gene expression in individual Bergmann glia from developing (P6) and mature (P30) mouse cerebellum OmicsDI

    ID: E-GEOD-18617

    Date Released: 09-08-2015

    Description: Bergmann glial cells of the vertebrate cerebellum play essential roles in the development and maintenance of cerebellar structure and function. During...

  9. Gene expression in third instar larval eye discs OmicsDI

    ID: E-GEOD-51724

    Date Released: 09-07-2015

    Description: We used microarrays to identify genes that are differentially expressed in the absence of miR-998 expression. Drosophila third instar larvae were sele...

  10. The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (RNA-Seq) OmicsDI

    ID: E-GEOD-52687

    Date Released: 08-24-2015

    Description: Metastasis is the major cause of death in cancer patients, yet the genetic/epigenetic programs that drive metastasis are poorly understood. Here, we r...

  11. Single cell derived clonal analysis of human glioblastoma links functional and genomic heterogeneity OmicsDI

    ID: E-MTAB-2693

    Date Released: 08-26-2015

    Description: Single cell derived clones were extracted from four glioblastoma tumors using fluorescence activated cell sorting with CD15 and CD133 markers. Unsorte...

  12. Expression data for Control and SMRT-Depleted MCF-7 Cells OmicsDI

    ID: E-GEOD-57935

    Date Released: 08-25-2015

    Description: Estrogens are an important regulator of breast cancer disease progression, and they function by binding the estrogen receptor--alpha (ER-alpha) to reg...

  13. Transcription profiling of rat brain hippocampi of animals fed the ketogenic diet (KD) to provide insight into the anticonvulsant action of KD OmicsDI

    ID: E-GEOD-1155

    Date Released: 08-27-2015

    Description: The ketogenic diet (KD) is an anticonvulsant treatment that has been used to manage medically-intractable epilepsies. The KD requires 10-12 days to b...

  14. Transcription profiling of rat cerebellum and hippocampus following exposure to neurotoxicant Aroclor 1254 OmicsDI

    ID: E-GEOD-13793

    Date Released: 08-28-2015

    Description: Pregnant rats (Long-Evans) were dosed perinatally with 0 or 6 mg/kg/day of Aroclor 1254 from gestation day 6 through postnatal day (PND) 21. Gene exp...

  15. Differential response of hepatic transcriptome of post-smolt Atlantic salmon (Salmo salar) to dietary DHA alone or in combination with other LC-PUFA OmicsDI

    ID: E-MTAB-3840

    Date Released: 08-28-2015

    Description: This study compared the transcriptome of salmon fed diets with different levels and/or composition of LC_PUFA. Feeds were formulated with either DHA (...


    ID: E-MTAB-3604

    Date Released: 08-28-2015

    Description: Chronic obstructive pulmonary disease (COPD) is one of the most prevalent lung diseases, and involves persistent airflow limitation and incorporates b...

  17. Transcription profiling by array of adult mouse neural stem cell differentiation after 3 and 12 hours of fibrinogen treatment OmicsDI

    ID: E-MTAB-3013

    Date Released: 08-23-2015

    Description: Examination of gene expression during adult neural stem cell differentiation after 3 and 12 hours after fibrinogen treatment compared to control.

  18. Transcription profiling by array of human LNCaP and abl cells after treatment with dihydrotestosterone or androgen receptor siRNA OmicsDI

    ID: E-GEOD-11428

    Date Released: 08-27-2015

    Description: Androgen receptor (AR) is a ligand-dependent transcription factor that plays a key role in the onset and progression of prostate cancer. We investigat...

  19. Transcription profiling by array of human female interstitial cystitis urothelial cells after inducing differentiation OmicsDI

    ID: E-GEOD-11839

    Date Released: 08-27-2015

    Description: Purpose: Evaluate gene expression profiles after inducing differentiation in cultured interstitial cystitis (IC) and control urothelial cells. Materi...

  20. Changes in global gene expression in lung cancer cell lines A549 (A) and HTB56 (H) [Affymetrix microarrays] OmicsDI

    ID: E-GEOD-52143

    Date Released: 08-26-2015

    Description: Here, we analyzed global gene expression changes that were associated with pro-metastatic phenotypes in non-small cell lung cancer using the Affymetri...

  21. High-resolution transcript analysis of the defense responses to Colletotrichum graminicola infection in maize genotypes with contrasting anthracnose r... OmicsDI

    ID: E-MTAB-3847

    Date Released: 08-27-2015

    Description: Anthracnose caused by the ascomycete Colletotrichum graminicola is one of the most severe fungal diseases of Zea maize. Cultivars with different level...

  22. Transcription profiling by array of human nasopharyngeal carcinoma patients OmicsDI

    ID: E-GEOD-12452

    Date Released: 08-28-2015

    Description: Nasopharyngeal carcinoma is an Epstein-Barr virus-associated epithelial cancer with high prevalence in Southeast Asia. mRNA expression levels were mea...

  23. Comparison of expression profiles for Agrobacterium tumefaciens wild-type strain C58 grown with or without iron. OmicsDI

    ID: E-GEOD-71138

    Date Released: 08-20-2015

    Description: The plant pathogen Agrobacterium tumefaciens attaches to and forms biofilms on both biotic and abiotic surfaces. The transition between free-living, p...

  24. Stromal Fat4 acts non-autonomously with Dachsous1/2 to restrict the nephron progenitor pool OmicsDI

    ID: E-GEOD-70452

    Date Released: 08-20-2015

    Description: Regulation of the balance between progenitor self-renewal and differentiation is critical to development. In the mammalian kidney, reciprocal signalin...

  25. A transcriptome atlas of embryonic skin OmicsDI

    ID: E-GEOD-70288

    Date Released: 08-20-2015

    Description: We co-isolated hair follicle placode and dermal condensate cells along with other specific cell types from E14.5 embryonic mouse skin. With next-gener...

  26. Broad spectrum antibodies to self-antigens and cytokines in RAG deficiency OmicsDI

    ID: E-GEOD-70618

    Date Released: 08-20-2015

    Description: Overall, this work describes the largest cohort of patients with RAG mutations and an associated phenotype consisting of combined immunodeficiency and...

  27. Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation OmicsDI

    ID: E-GEOD-71296

    Date Released: 08-20-2015

    Description: We report the transcriptomic response of a moderately growing subisolate from the culture of Botryococcus sp. CCALA-779 upon nitrogen deprivation (ND)...

  28. Analysis of transcriptomes during cardioac reprogramming by RNA-deep Sequencing OmicsDI

    ID: E-GEOD-71405

    Date Released: 08-20-2015

    Description: Fibroblasts can be reprogrammed into cardiomyocyte-like cells by overexpressing transcription factors, GATA4, Hand2, Mef2C and Tbx5 (GHMT). A83-01, an...

  29. Comparison of C3 or C3156-181-peptide treated Isolated primary rat neonatal Sschwann Cells after 72 h OmicsDI

    ID: E-GEOD-70748

    Date Released: 08-20-2015

    Description: The aim of this study was to identify differently expressed genes between C3 or C3156-181-peptide treated Isolated primary rat neonatal Schwann Cells....

  30. Bcl3 target genes in mESCs OmicsDI

    ID: E-GEOD-70246

    Date Released: 08-20-2015

    Description: Bcl3 is expressed in mESCs. ChIP-seq was used to identify its binding pattern and target genes. ChIP of Bcl3 in mESCs under conventional culture condi...

  31. Transcription profiling by array of pre- and post-operative breast carcinomas OmicsDI

    ID: E-MTAB-470

    Date Released: 08-21-2015

    Description: Gene expression studies on breast cancer have generally been performed on tissue obtained at the time of surgery. Overexpression of several genes may ...

  32. SPINK1 promotes Colorectal Cancer progression by down regulating Metallothioneins expression OmicsDI

    ID: E-GEOD-70761

    Date Released: 08-20-2015

    Description: Expression profiling was performed using Agilent Whole Human Genome Oligo Microarray (Santa Clara, CA) according to the manufacturer’s protocol. A t...

  33. Mouse lung tissue transcriptome response to influenza H5N1 and mutants (Agilent-028005) OmicsDI

    ID: E-GEOD-72008

    Date Released: 08-20-2015

    Description: The purpose is to obtain samples for mRNA, miRNA, proteomics, lipidomics, metabolomics, and histopathology analysis in mouse lung infected with WT A/V...

  34. Complete hematologic response of early-T-cell progenitor acute lymphoblastic leukemia to the gamma-secretase inhibitor BMS-906024: genetic and epigene... OmicsDI

    ID: E-GEOD-71414

    Date Released: 08-20-2015

    Description: Notch pathway antagonists such as gamma-secretase inhibitors (GSI) are being tested in diverse cancers, but exceptional responses have yet to be repor...

  35. Expression data from foam cells of apolipoprotein E-deficient mice OmicsDI

    ID: E-GEOD-70619

    Date Released: 08-20-2015

    Description: Hypercholesterolemai is a major contributor to atherosclerosis development. To assess the effects of hypercholesterolemia on the transcriptional profi...

  36. Interspecies Comparative Genomics Identifies Optimal Mouse Models of Scleroderma (bleoskin) OmicsDI

    ID: E-GEOD-71998

    Date Released: 08-20-2015

    Description: Systemic sclerosis (SSc) is confounded by considerable disease heterogeneity. Animal models of SSc that recapitulate distinct subsets of disease at t...

  37. Whole rye consumption improves blood and liver n-3 fatty acid profile and gut microbiota composition in rats OmicsDI

    ID: E-GEOD-71726

    Date Released: 08-20-2015

    Description: This study in rats was designed to investigate whether whole rhye (WR) can influence the metabolism of n-3 and n-6 long-chain fatty acids (LCFA) and g...

  38. MicroRNA-200c suppresses tumorigenesis through directly targeting CDK2 in renal cell carcinoma OmicsDI

    ID: E-GEOD-71302

    Date Released: 08-20-2015

    Description: MicroRNAs (miRNAs) expression profiles are widely investigated in the major cancers, but their specific roles and functions in cancers have not yet to...

  39. MIWI2 and MILI have differential effects on piRNA biogenesis and DNA methylation OmicsDI

    ID: E-GEOD-70731

    Date Released: 08-20-2015

    Description: In developing male germ cells, prospermatogonia, two Piwi proteins, MILI and MIWI2, use piRNA guides to repress transposable element (TE) expression a...

  40. Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage priming OmicsDI

    ID: E-GEOD-70930

    Date Released: 08-20-2015

    Description: The plasticity and immunomodulatory capacity of mesenchymal stem cells (MSCs) have spurred clinical use in recent years. However, clinical outcomes v...

  41. Effect of increased FOXA1 on gene expression in bladder cancer cells OmicsDI

    ID: E-GEOD-56037

    Date Released: 08-25-2015

    Description: Urothelial cell carcinoma of the bladder (UCC) is a common disease characterized by FGFR3 mutation. Whilst upregulation of this oncogene occurs most f...

  42. Human ESC-based modeling of pediatric gliomas by K27M mutation in histone H3.3 variant OmicsDI

    ID: E-GEOD-55541

    Date Released: 08-25-2015

    Description: Human diffuse intrinsic pontine gliomas (DIPG) are an aggressive form of pediatric brain tumors that arise in the pons in young children thus resultin...

  43. Transcription profiling by array of human BT-20 cells with siRNA silencing of E-cadherin and P-cadherin OmicsDI

    ID: E-MEXP-3329

    Date Released: 08-26-2015

    Description: Gene expression of four cell lines derived from BT-20 cells, namely, BT20 siCtr (E+/P+), BT20 siPcad (E+/P-), BT20 siEcad (E-/P+), and BT20 siEPcad (E...

  44. Systems genetics analysis of a recombinant inbred mouse cell culture panel reveals Wnt pathway member Lrp6 as a regulator of adult hippocampal precurs... OmicsDI

    ID: E-GEOD-71466

    Date Released: 08-20-2015

    Description: Stem/precursor cells were isolated from the hippocampal subgranular zone of adult mice and maintained as adherent cultures. Cultures from 20 different...

  45. Expression data from the liver of rat treated by Piperonyl butoxide and Dammar resin OmicsDI

    ID: E-GEOD-71413

    Date Released: 08-20-2015

    Description: Several studies have successfully detected hepatocarcinogenicity in rats based on gene expression data. Here, we constructed a model for detecting non...

  46. Aerobic training modulation of the host systemic milieu directly alters breast cancer cell phenotype in vitro. OmicsDI

    ID: E-GEOD-46925

    Date Released: 08-21-2015

    Description: Aberrant production and/or function of multiple host systemic factors (e.g., metabolic and immune-inflammatory mediators) act in concert to promote a ...

  47. Expression data from BRAFV600E A375 melanoma cells treated with vehicle or vemurafenib OmicsDI

    ID: E-GEOD-42872

    Date Released: 08-24-2015

    Description: Vemurafenib is a BRAF inhibitor with specificity for the most common BRAF mutant encountered in melanomas (BRAFV600E). Vemurafenib suppresses the prol...

  48. Dietary selenium levels affect selenoprotein expression and support the interferon-γ and IL-6 immune response pathways in mice [RNA-Seq] OmicsDI

    ID: E-GEOD-70158

    Date Released: 08-20-2015

    Description: Mice were fed Se-deficient or Se-adequate diets for 6 weeks. Liver and lung tissue were harvested and processed for RNA-Seq, ribosome profiling, and m...

  49. Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells OmicsDI

    ID: E-GEOD-67351

    Date Released: 08-26-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  50. Gene expression profiling of skeletal myoblast differentiation and exposure to TNF-alpha or IGF1 OmicsDI

    ID: E-MTAB-3474

    Date Released: 04-08-2015

    Description: Skeletal myocyte differentiation involves fusion of myoblasts to multinucleated myotubes. In vitro differentiation can be induced by serum withdrawal....

  51. Arterial endothelial methylome: Differential DNA methylation OmicsDI

    ID: E-MTAB-1930

    Date Released: 04-15-2015

    Description: Atherosclerosis preferentially develops in arterial regions where hemodynamic disturbed flow and oxidative stress are present. Epigenomic regulation, ...

  52. Small RNA-Sequencing of PDAC tissues and control samples. OmicsDI

    ID: E-MTAB-3494

    Date Released: 04-13-2015

    Description: FASTQ Sequencing files of 5 healthy pancreas tissues and 6 pancreatic ductal adenocarcinoma (PDAC) tissues. Analysis of data is presented in the manu...

  53. Whole genome expression microarray analysis in quadriceps of wild-type and NF90-NF45 double transgenic mouse OmicsDI

    ID: E-GEOD-67591

    Date Released: 04-11-2015

    Description: The complex of NF90 and NF45 is known to participate in transcriptional regulation, mRNA stabilization and microRNA biogenesis in vitro. However, the ...

  54. High-resolution DNase-seq profiles of targeted loci in mES-derived primitive ectoderm OmicsDI

    ID: E-MTAB-3497

    Date Released: 04-13-2015

    Description: The aim of this experiment was to profile DNase-I accessibility at a subset of genomic regions in extremely high coverage. After DNase-I treatment, DN...

  55. Noncoding RNAs in human intervertebral disc degeneration: an integrated microarray study OmicsDI

    ID: E-GEOD-67567

    Date Released: 04-11-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Each of the SubSeries contained in this SuperSeries represents identical RNA samples used...

  56. Functional diversity and convergence of small non-coding RNAs in male germ cell differentiation and fertilization (piRNA and endo-siRNAs) OmicsDI

    ID: E-GEOD-59254

    Date Released: 04-06-2015

    Description: The small non-coding RNAs (sncRNAs) are considered as postranscriptional key regulators of male germ cell development. In addition to microRNAs (miRNA...

  57. Generation of integration-free induced hepatocytes from mouse fibroblasts OmicsDI

    ID: E-GEOD-67362

    Date Released: 04-06-2015

    Description: Previous studies demonstrated that hepatocyte-specific transcription factors could directly convert fibroblasts into functional hepatocytes-like cells...

  58. Generation of Integration-free Induced Neural Stem Cells from Mouse Fibroblasts OmicsDI

    ID: E-GEOD-67319

    Date Released: 04-06-2015

    Description: Recent studies demonstrated that fibroblasts could be converted into induced neural stem cells (iNSCs). However, the insertional mutation caused by ra...

  59. Gene expression analysis in conventional and vitamin C treated iTreg cells OmicsDI

    ID: E-GEOD-67653

    Date Released: 04-10-2015

    Description: Analysis of the effect of vitamin C on gene expression regulation in iTreg cells. Results provide important information of the response of iTreg cells...

  60. MiRNA expression profiling or ERCC1 deficient and control mouse lineage negative, ScaI positive, Kit positive (LSK) bone marrow cells OmicsDI

    ID: E-MTAB-3310

    Date Released: 04-09-2015

    Description: MiRNA expression differences induced by ERCC1 deficiency.

  61. IL-17A and IL-6 -stimulated expression data from primary epithelial cell cultures derived from human trachea tissues OmicsDI

    ID: E-GEOD-67361

    Date Released: 04-05-2015

    Description: RNAs were isolated from primary cultures after 24 hour treatment with IL-17A or IL-6 (10 ng/ml) in primary human TBE cells. We used microarrays to ana...

  62. Bedaquiline-induced transcriptional response of Mycobacterium smegmatis mc2 155 OmicsDI

    ID: E-GEOD-59871

    Date Released: 04-11-2015

    Description: Transcriptional profiling of M. smegmatis mc2155 grown on Hartmans de Bont (HdB) supplemented with 0.2% glycerol and 0.05% Tween80 challenged with 2 ...

  63. Transcription profiling by array of Arabidopsis thaliana Columbia and MYB94 over expressing plant line leaves to investigate genome wide gene expressi... OmicsDI

    ID: E-MTAB-2870

    Date Released: 04-14-2015

    Description: The experiment was designed to enable comparison between columbia and MYB94 OX plants line Arabidopsis leaves

  64. The CdaA Regulon in Streptoccus mutans OmicsDI

    ID: E-GEOD-65511

    Date Released: 04-11-2015

    Description: Nucleotide signaling pathways are found in all kingdoms of life and are utilized to coordinate a rapid response to changes in the environment. One mor...

  65. microRNA Induction of Fatal Differentiation Programs is a Context-selective Vulnerability in Ovarian Cancer Cells [PEO1] OmicsDI

    ID: E-GEOD-67327

    Date Released: 04-06-2015

    Description: Analysis of gene expression in ovarian cancer cells with and without overexpression of the miRNA mir-124 which will provide data about genes possibly ...

  66. DNase-seq profile of mES cells treated with PFA/Noco/5aza, at different timepoints within in vitro mouse differentiation protocols, or in the presence... OmicsDI

    ID: E-MTAB-3465

    Date Released: 04-10-2015

    Description: The aim of this experiment was to profile the DNase-I accessibility landscape in mES when treated with various factors effecting genomic methylation, ...

  67. DNase-seq profile of E11.5 whole mouse embryos OmicsDI

    ID: E-MTAB-3468

    Date Released: 04-10-2015

    Description: The aim of this experiment was to profile the DNase-I accessibility landscape of E11.5 whole mouse embryos. Separate fractions were taken for DNA clea...

  68. microRNA Induction of Fatal Differentiation Programs is a Context-selective Vulnerability in Ovarian Cancer Cells [miRNA] OmicsDI

    ID: E-GEOD-67329

    Date Released: 04-06-2015

    Description: Analysis of microRNA (miRNA) expression in ovarian cancer cell lines and human ovarian surface epithelium (HOSE) in order to identify differentially e...

  69. Murine hamatopoietic stem cell (HSC): wild type and Skp2 knockout OmicsDI

    ID: E-GEOD-23064

    Date Released: 04-11-2015

    Description: Transcriptional profiling of mouse HSC comparing wild type (WT) and Skp2 knockout Collected bone marrow (BM) cells from WT and Skp2 knockout mice, sta...

  70. Separated and combined effects of the over-expression of a plant defensin and of a 20 mM Zn treatment on yeast. OmicsDI

    ID: E-GEOD-63395

    Date Released: 04-04-2015

    Description: The expression of plant defensins in Saccharomyces cerevisiae has been shown to increase tolerance to Zn of yeast (Mirouze et al., 2006; Shahzad et al...

  71. Genome-wide copy number analyses reveal genomic abnormalities involved in transformation of follicular lymphoma OmicsDI

    ID: E-GEOD-67385

    Date Released: 04-05-2015

    Description: We studied 277 lymphoma samples (198 FL and 79 transformed FL [tFL]) using a single-nucleotide polymorphism array to identify the secondary chromosoma...

  72. Effects of differentiated hMADS adipocytes on BT474 and SKBR3 breast cancer cells OmicsDI

    ID: E-GEOD-52660

    Date Released: 04-04-2015

    Description: Analysis of gene expression levels of HER2-positive breast cancer cells exposed to the conditioned medium from adipocytes. The hypothesis tested in th...

  73. Unique microRNA profiles revealed in different fractions of human milk and maternal blood during lactation OmicsDI

    ID: E-GEOD-66358

    Date Released: 04-05-2015

    Description: Human milk (breastmilk) is much more than nutrition for the infant, containing an array of regulatory agents with immunoprotective and developmental f...

  74. SRA of transcriptome of Hevea brasiliensis OmicsDI

    ID: E-GEOD-59981

    Date Released: 04-05-2015

    Description: We report here the use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly to gain insight into the wide ...

  75. Transcriptomics Analyses of tobacco leaves and roots sample during water-deficit OmicsDI

    ID: E-GEOD-67434

    Date Released: 04-05-2015

    Description: Microarray experiments were performed on the roots and leaves samples seperately using custom based Nimblegen platform (12plex). This is a time-course...

  76. Low- and middle-dose of radiation on hNPC and HUVEC OmicsDI

    ID: E-GEOD-67309

    Date Released: 04-05-2015

    Description: Many neural progenitor cells present in the fetus, but also in adult brain, which play a major role for the reproduction for healingin regeneration of...

  77. Identification of genes activated in cancer cells cultured under hypoxia and serum-free condition OmicsDI

    ID: E-GEOD-55564

    Date Released: 04-04-2015

    Description: To identify genes activated under hypoxia (1%O2) and serum-free treatment of a cancer cell line, we performed cDNA microarray analysis with an ovarian...

  78. Analysis of global gene expression profiles of A549 cells treated with XRN2 siRNA under basal conditions OmicsDI

    ID: E-GEOD-66662

    Date Released: 04-05-2015

    Description: Untransfected (no siRNA), control siRNA or XRN2 siRNA treated A549 cells were analyzed for gene expression differences under basal conditions 3 Biolog...

  79. Increased Risk of Genetic and Epigenetic Instability in Human Embryonic Stem Cells Associated with Specific Culture Conditions II OmicsDI

    ID: E-GEOD-56834

    Date Released: 04-05-2015

    Description: The self-renewal and differentiation capacities of human pluripotent stem cells (hPSCs) make them good sources of cells for cell transplantation thera...

  80. Differential gene expression in neuroblastoma cells after transfection with control siRNA, N-Myc siRNA-1, N-Myc siRNA-2, lncMycN siRNA-1 or lncMycN si... OmicsDI

    ID: E-GEOD-50959

    Date Released: 04-04-2015

    Description: N-Myc oncoprotein induces neuroblastoma by modulating gene transcription, and long noncoding RNAs exert biological effects by regulating gene expressi...

  81. Identification of genes activated under CoCl2 treatment in an Sp1 dependent manner and under hypoxia without serum condition in an ovarian cancer cell... OmicsDI

    ID: E-GEOD-55565

    Date Released: 04-04-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  82. Activation of defense pathways in Scots pine bark after feeding by Pine Weevil (Hylobius abietis) OmicsDI

    ID: E-GEOD-60383

    Date Released: 04-04-2015

    Description: Coniferous trees use the oleoresin, a mixture of non-volatile non-volatile diterpene acids and a large (20-50%) volatile fraction of mono- and sesqui...

  83. Gene expression profile of hESC/hIPC-derived keratinocytes OmicsDI

    ID: E-GEOD-55898

    Date Released: 04-04-2015

    Description: To induce the differentiation, undifferentiated human pluripotent stem cells (both hESC andh iPSC; T0 time point) were transferred into 20% O2 atmosph...

  84. Expression of Autophagy Genes in Myeloproliferative Disorders OmicsDI

    ID: E-GEOD-38543

    Date Released: 04-04-2015

    Description: Comparison of ATG gene family members in MPN pattients with normal controls One-Way ANOVA while contrasting ATG gene family members in 11 Normal (Cont...

  85. miRNA regulated by Notch signaling in macrophage OmicsDI

    ID: E-GEOD-67364

    Date Released: 04-05-2015

    Description: This two-color miRNA chip was perfored to identify the downstream miRNAs regulated by Notch signaling in macrophage polarization. To identify the down...

  86. Robust enumeration of cell subsets from tissue expression profiles (BeadChip) OmicsDI

    ID: E-GEOD-65133

    Date Released: 04-05-2015

    Description: We introduce CIBERSORT, a method for characterizing cell composition of complex tissues from their gene expression profiles. When applied to enumerati...

  87. Transcriptional Profile of Mycobacterium tuberculosis Replicating in Human Type II Alveolar Epithelial A549 cell line OmicsDI

    ID: E-GEOD-58466

    Date Released: 04-05-2015

    Description: Infection with Mycobacterium tuberculosis (M. tb) is initiated when an aerosol droplet carrying a few bacilli is inhaled into an alveolus. Alveolar ep...

  88. H3K27 trimethylation in mouse peripheral nerve OmicsDI

    ID: E-GEOD-64260

    Date Released: 04-04-2015

    Description: ChIP-seq of H3K27 trimethylation in sciatic nerve H3K27me3 ChIP-Seq with corresponding input

  89. The structure of gene networks that constrain and promote diversification in Heliconius melpomene OmicsDI

    ID: E-GEOD-64051

    Date Released: 04-04-2015

    Description: Comparison of whole genome and tiled gene expression between different colour pattern races of H. melpomene in developing wings. A total of 96 ds-cDNA...

  90. Genome-wide map of H3K4me3 and PRDM9-binding in 12 day post-partum mouse spermatocytes OmicsDI

    ID: E-GEOD-60906

    Date Released: 04-03-2015

    Description: PRDM9, a histone methyltransferase, initiates meiotic recombination by binding DNA at recombination hotspots and directing the position of DNA double-...

  91. Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells OmicsDI

    ID: E-GEOD-60927

    Date Released: 04-04-2015

    Description: Upon encounter with antigen, mature B cells undergo complex changes in their physiological state and anatomical localization, and initiate a different...

  92. Extensive temporal transcriptome and microRNA analyses identify molecular mechanisms underlying mitochondrial dysfunction induced by multi-walled carb... OmicsDI

    ID: E-GEOD-63552

    Date Released: 04-03-2015

    Description: Understanding toxicity pathways of engineered nanomaterials (ENM) has recently been brought forward as a key step in 21st century ENM risk assessment....

  93. Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture. OmicsDI

    ID: E-GEOD-65126

    Date Released: 04-03-2015

    Description: Topological domains are key architectural building blocks of chromosomes in complex genomes. Their functional importance and evolutionary dynamics are...

  94. Unraveling determinants of transcription factor binding outside the core binding site OmicsDI

    ID: E-GEOD-66143

    Date Released: 03-21-2015

    Description: Binding of transcription factors (TFs) to regulatory sequences is a pivotal step in the control of gene expression. Despite many advances in the chara...

  95. Causal signals between codon bias, mRNA structure and the efficiency of translation and elongation OmicsDI

    ID: E-GEOD-63789

    Date Released: 04-03-2015

    Description: Ribosome profiling data reports on the distribution of translating ribosomes, at steady-state, with codon-level resolution. We present a robust method...

  96. Differential susceptibility of human pleural and peritoneal mesothelial cells to asbestos exposure OmicsDI

    ID: E-GEOD-63966

    Date Released: 04-03-2015

    Description: We hypothesize that the observed differences in incidences of pleural and peritoneal malignant mesothelioma (MM) are the result of differences in the ...

  97. Zic2, an enhancer-binding factor required for embryonic stem cell specification OmicsDI

    ID: E-GEOD-61188

    Date Released: 04-03-2015

    Description: The Zinc finger protein of the cerebellum 2 (Zic2) is one of the vertebrate homologs of the Drosophila pair-rule gene odd-paired (opa). Our molecular...

  98. Functional heterogeneity of human memory T cell clones primed by pathogens or vaccines OmicsDI

    ID: E-GEOD-64852

    Date Released: 04-03-2015

    Description: It is unclear to what extent T helper cells with a different phenotype (chemokine receptor and cytokine production profile) are generated in response ...

  99. mRNA sequencing of two brain regions (prefrontal cortex and hippocampus) and left myocardial tissue in mice with chronic heart failure vs. sham-operat... OmicsDI

    ID: E-GEOD-55280

    Date Released: 04-03-2015

    Description: After induction of ischemic chronic heart failure (CHF), mice exhibited depression-like behavior, in terms of increased anhedonia, and decreased both ...

  100. Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (ChIP-Seq, F... OmicsDI

    ID: E-GEOD-62245

    Date Released: 04-02-2015

    Description: Most B cell lymphomas arise in the germinal center (GC), where humoral immune responses evolve from potentially oncogenic cycles of mutation, prolifer...

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