NTF4 | bioCADDIE Data Discovery Index
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Displaying 20 of 128 results for "NTF4"
  1. CRYSTAL STRUCTURE OF TRKB KINASE DOMAIN IN COMPLEX WITH GW2580

    ID: PDB:4AT5

    Description: BDNF/NT-3 GROWTH FACTORS RECEPTOR (E.C.2.7.10.1)

  2. SigmaS-transcription initiation complex with 4-nt nascent RNA

    ID: PDB:5IPM

    Description: NA polymerase subunit omega, RNA polymerase sigma factor RpoS/DNA Complex...

  3. SigmaS-transcription initiation complex with 4-nt nascent RNA

    ID: PDB:5IPN

    Description: NA polymerase subunit omega, RNA polymerase sigma factor RpoS/DNA Complex...

  4. E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA

    ID: PDB:4YLO

    Description: E. coli RNA Polymerase alpha subunit, E. coli RNA Polymerase beta subunit, E. coli RNA Polymerase beta' subunit, E. coli RNA Polymerase omega subunit,...

  5. Effect of 12 hour sleep restriction on the transcriptome of mice carying a human Per3 polymorphism

    ID: PRJNA239781

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ariable-number tandem-repeat (VNTR) polymorphism (4 or 5 repeats 54 nt in length) in the circadian gene PER3 is associated with differences in sleep timing and homeostatic re...
  6. Effect of ultradian light-dark cycles on the transcriptome of mice carying a human Per3 polymorphism

    ID: PRJNA239783

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ariable-number tandem-repeat (VNTR) polymorphism (4 or 5 repeats 54 nt in length) in the circadian gene PER3 is associated with differences in sleep timing and homeostatic re...
  7. RNA Polymerase II Initiation Complex with a 4-nt RNA

    ID: PDB:3RZO

    Description: DNA-directed RNA polymerase II subunit RPB1 (E.C.2.7.7.6), DNA-directed RNA polymerase II subunit RPB2 (E.C.2.7.7.6), DNA-directed RNA polymerase II s...

  8. CRYSTAL STRUCTURE OF TRKB KINASE DOMAIN IN COMPLEX WITH CPD5N

    ID: PDB:4AT3

    Description: BDNF/NT-3 GROWTH FACTORS RECEPTOR (E.C.2.7.10.1)

  9. E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA

    ID: PDB:4YLN

    Description: ase omega subunit, E. coli RNA Polymerase sigma70 factor/DNA Complex...

  10. Gene expression after focal demyelination of the corpus callosum

    ID: PRJNA126563

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: rmine expression profiles of cytokines and growth factor profiles in the subventricular zone (SVZ) after demyelination we performed gene array analysis. In SVZ after 4 d...
  11. Copy number variants in candidate genes are genetic modifiers of Hirschsprung disease

    ID: PRJNA140231

    Keywords: Variation

    Access Type: download

    dataset.description: trol. Sex-matched controls. Technical replicates: 4 were examined twice and 3 were studied in triplicate. Technical replicates: 408.3.1, 408.3.2 Technical replicates: 300.3.1, 300.3.2 Technical replicates: 354.3.1, 354.3.2 Technical replicates: 355.3.1, 355.3.2 Technical replicates: 63.3.1, 63.3.2, 63.3.3 Technical replicates: 122.7.1, 122.7.2, 122.7.3 Technical replicates: 413.3.1, 413.3.2, 413.3.3...
  12. RNA polymerase binding sites revealed by ChIP-chip in S. Typhimurium wild-type, ΔrelAΔspoT (ppGpp0), and ΔdksA strains at early stationary phase (E...

    ID: PRJNA268956

    Keywords: Epigenomics

    Access Type: download

    dataset.description: 2 (LSP) and subjected to ChIP-chip analysis at 60 nt resolution. Overall design: 38 samples (parent strain, ΔrelAΔspoT, ΔdksA grown to ESP or LSP, protein-DNA crosslinked and fragments immunoprecipitated with Ab against E.coli RNAP beta subunit (Neoclone, cat # W...
  13. Arabidopsis thaliana : In vitro gennomic DNA binding assay and sequencing using recombinant HY5 protein.

    ID: PRJNA263309

    Keywords: other

    Access Type: download

    dataset.description: was extracted from the whole aerial portion of 2-4-week-old Arabidopsis Col-0 plants using a DNeasy Plant Midi Kit (Qiagen) and sheared into lengths of approximately 150-200 nt by...
  14. Determination of a cell proliferation and chromosomal instability signature in anaplastic thyroid carcinoma

    ID: PRJNA102645

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: comparison of profiles of normal thryoid tissue (NT), papillary thyroid carcinoma tissue (PTC) and anaplastic thyroid carcinoma tissue (ATC) was carried out to identify expression p...
  15. Zea mays : Zea mays Transcriptome or Gene expression

    ID: PRJNA158565

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: the Pl1-Rhoades haplotype, for accumulation of 24 nt RNA species, and for maintenance of a 5-methylcytosine pattern distinct from that maintained by RNA polymerase IV. Genetic tests indicate that RMR2 is not required for paramutation occurring at the red1 locus. These results distinguish the paramutation-type mechanisms operating at specific haplotypes. The RMR2 clade of proteins provides a new entry point for understanding the diversity of epigenomic control o...
  16. Small RNA Solexa sequencing of 4 Plant Species in the Cucurbitaceae family

    ID: PRJNA167333

    Keywords: Transcriptome or Gene expression

    Access Type: download

  17. Epigenetic effects of antidepressants to neuroprotective genes in neuronal cultured cells

    ID: PRJNA266410

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: effect to restore the expression of brain-derived neurotrophic factor gene, which is decreased in depressed patients, by increasing histone acetylation. However, it is largely unknown whether other antidepressants have similar epigenetic effects to change gene expression. To address this q...
  18. PTBP1 - Modified iCLIP

    ID: PRJEB11646

    Keywords: Other

    Access Type: download

    dataset.description: ATP (1mM), 0.4 l 10x PNK buffer, 3 l water) and a 5 marker ligation (6 l water, 5 l 4X ligation buffer, 2 l RNA ligase, 1 l RNasin, 2 l 5 marker (100 M), 4 l PEG400). The sequence of the 5 marker is CAGUCCGACGAUC, which corresponds to the Illumina short RNA 5 Adapter (RA5), part #15013205; this sequence is not complementary to the primers used for amplification of iCLIP cDNA libraries (Huppertz et al., 2014). We prepared cDNA libraries with an approximate cDNA size range of 40-140 nucleotides (nt). We then produced sequence reads of 150 nt using the Illumina MiSeq platform for PTBP1.The rest of the protocol was carried out as previously described (Huppertz et al., 2014)....
  19. Down-regulation as the dominant hippocampal gene expression profile with voluntary resistance wheel running by DNA microarray analysis

    ID: PRJNA229145

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: memory associated with hippocampal brain-derived neurotrophic factor (BDNF) signaling compared to wheel running (WR) without a load (Lee et al., 2012; Lee et al., 2013). Despite these new evidences, mechanisms for RWR-induced improvement of hippocampal function remained to be clarified. In the present study, we have utilized the high-throughput DNA microarray approach to gain deep insight ...
  20. Minimal peroxide exposure of neuronal cells induces multifaceted adaptive responses.

    ID: PRJNA128595

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: Y5Y cells were maintained at 37oC in a humidified 5% CO2 incubator in AMEM/F12 supplemented with 10% FBS, 100 units/ml ?penicillin and 100 units/ml streptomycin. Cells were treated with either phosphate-buffered saline (PBS) (CTR), or 10nM hydrogen peroxide(CMP) (H2O2: Sigma Aldrich, St Louis MO) for seven days. Cell growth media and applied hydrogen peroxide treatments were changed daily. Both control and hydrogen peroxide treated SH-SY5Y cell were serum-starved overnight prior to ligand stimulations with either, Beta-methylcholine(BMC) (Calbiochem, Gibbstown NJ) or 10ng/ml brain derived neurotrophic factor (BDNF) (Invitrogen, Carlsbad CA) for 2, 4, or 8 hours. Cells were then collected and used to generate total RNA....

Displaying 20 of 128 results for "NTF4"