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Displaying 50 of 866 results for " "
  1. Software for "MetaLIMS, A Simple Open-Source Laboratory Information Management System for Small Metagenomic Labs"

    ID: doi:10.5524/100293

    Release Date: 04-01-2017

    Description: As the cost of sequencing continues to fall, smaller groups increasingly initiate and manage larger sequencing projects and take on the complexity of ...

  2. Supporting data for "The Healthy Brain Network Serial Scanning Initiative"

    ID: doi:10.5524/100259

    Release Date: 12-30-2016

    Description: Although typically measured during the resting state, a growing literature is illustrating the ability to map intrinsic connectivity in task and natur...

  3. Supporting data for "Stepwise Distributed Open Innovation Contests for Software Development - Acceleration of Genome-Wide Association Analysis"

    ID: doi:10.5524/100264

    Release Date: 12-23-2016

    Description: The association of differing genotypes with disease related phenotypic traits offers great potential to both help identify new therapeutic targets and...

  4. Supporting data for "Genome sequencing of the winged midge, Parochlus steinenii, from the Antarctic Peninsula"

    ID: doi:10.5524/100256

    Release Date: 12-07-2016

    Description: In the Antarctic, only two species of Chironomidae occur naturally—the wingless midge, Belgica antarctica, and the winged midge, Parochlus steinenii...

  5. Supporting data for "Calculating quality of public high-throughput sequencing data to obtain suitable subset for reanalysis from the Sequence Read Arc...

    ID: doi:10.5524/100304

    Release Date: 04-17-2017

    Description: It is important for public data repositories to promote the reuse of archived data. In the growing field of omics science, however, the increasing num...

  6. De novo sequencing of Ginkgo biloba

    ID: doi:10.5524/100209

    Release Date: 11-15-2016

    Description: Ginkgo biloba is one of the world’s most ancient plants, a living fossil that has remained essentially unchanged in terms of gross morphology for m...

  7. Supporting data for "Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets"

    ID: doi:10.5524/100204

    Release Date: 06-10-2016

    Description: Bioinformatics software often requires human-generated tabular text files as input and have specific requirements for how those data are formatted. Us...

  8. Supporting data for "ReGaTE, Registration of Galaxy Tools in Elixir"

    ID: doi:10.5524/100287

    Release Date: 03-14-2017

    Description: Bioinformaticians routinely use multiple software tools and data sources in their day-to-day work, and have been guided in their choices by a number o...

  9. NeuroView: a customizable browser-base utility

    ID: doi:10.5524/100237

    Release Date: 10-24-2016

    Description: The amount of data acquired for an fMRI experiment dimension wise is very large and a challenge for neuroscience studies, in particular for data analy...

  10. Supporting data for "Sequencing, de novo assembly, and annotation of a pink bollworm larval midgut transcriptome"

    ID: doi:10.5524/100203

    Release Date: 05-24-2016

    Description: The pink bollworm Pectinophora gossypiella (Saunders) (Lepidoptera: Gelechiidae) is one of the world's most important pests of cotton. Insecticide spr...

  11. A cortical surface-based geodesic distance package for Python

    ID: doi:10.5524/100232

    Release Date: 10-24-2016

    Description: The human cerebral cortex, whether tracing it through phylogeny or ontogeny, emerges through expansion and progressive differentiation into larger and...

  12. Facilitating big data meta-analyses for clinical neuroimaging through ENIGMA wrapper scripts

    ID: doi:10.5524/100231

    Release Date: 10-24-2016

    Description: A vast number of clinical disorders may involve changes in brain structure that are correlated with cognitive function and behavior (e.g., depression,...

  13. Nipype interfaces in CBRAIN

    ID: doi:10.5524/100226

    Release Date: 10-24-2016

    Description: We aim at the large-scale, automatic sharing of software tools between neuroimaging processing platforms, which will increase the relevance of such pl...

  14. Supporting data for "Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper"

    ID: doi:10.5524/100196

    Release Date: 10-04-2016

    Description: The five-pacer viper (Deinagkistrodon acutus) is a venomous snake living in Southern China, characterized by a triangular head and upturned rostral. I...

  15. Software and supporting material for: "RES-Scanner: a software package for genome-wide identification of RNA-editing sites"

    ID: doi:10.5524/100211

    Release Date: 08-15-2016

    Description: High-throughput sequencing (HTS) provides a powerful resolution for the genome-wide identification of RNA-editing sites. However, it remains a great c...

  16. Dataset collection from the 2015 Brainhack Proceedings

    ID: doi:10.5524/100215

    Release Date: 08-23-2016

    Description: Brainhack - a novel conference model for the open neuroscience research community - exploded in 2015. With three-day events in Honolulu (June), Montr...

  17. Optimized implementations of voxel-wise degree centrality and local functional connectivity density mapping in AFNI

    ID: doi:10.5524/100219

    Release Date: 10-20-2016

    Description: Degree centrality (DC) and local functional connectivity density (lFCD) are statistics calculated from brain connectivity graphs that measure how impo...

  18. Supporting data for the draft genome of the Northern snakehead, Channa argus

    ID: doi:10.5524/100279

    Release Date: 03-03-2017

    Description: The Northern snakehead (Channa argus), a member of Channidae family in Perciformes, is an economically important freshwater fish with its main distrib...

  19. Supporting data for "MinION nanopore sequencing of environmental metagenomes: a synthetic approach"

    ID: doi:10.5524/100278

    Release Date: 02-06-2017

    Description: Environmental metagenomic analysis is typically accomplished by assigning taxonomy and/or function from whole genome sequencing (WGS) or 16S amplicon ...

  20. Generating music with resting-state fMRI data

    ID: doi:10.5524/100224

    Release Date: 10-24-2016

    Description: Resting-state fMRI (rsfMRI) data generates time courses with unpredictable hills and valleys. People with musical training may notice that, to some de...

  21. Supporting data for "Spatially transformed fluorescence image data for ERK-MAPK and selected proteins within human epidermis".

    ID: doi:10.5524/100168

    Release Date: 12-08-2015

    Description: Human epidermis from three patients underwent single-target immunofluorescence labelling against: calmodulin, β1 integrin, β4 integrin, keratin-10, ...

  22. Supporting data for "Multi-platform microRNA profiling of hepatoblastoma patients using formalin fixed paraffin embedded archival samples".

    ID: doi:10.5524/100180

    Release Date: 11-26-2015

    Description: Formalin fixed paraffin embedded (FFPE) samples are a valuable resource in cancer research and have the potential to be extensively used. However, the...

  23. Supporting data for the "Draft genome of the Chinese mitten crab, Eriocheir sinensis"

    ID: doi:10.5524/100186

    Release Date: 01-12-2016

    Description: Chinese mitten crab, Eriocheir sinensis, has been one of the most famous representatives of crustacean in China. Its transition from swimming type to ...

  24. GigaDB promoting data dissemination and reproducibility

    ID: doi:10.5524/2014GGBNCIH

    Release Date: 06-23-2014

    Description: GigaDB promoting data dissemination and reproducibility.

  25. Supporting material for "High throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcripto...

    ID: doi:10.5524/100169

    Release Date: 04-07-2016

    Description: The venom of predatory marine cone snails mainly contains a diverse array of unique bioactive peptides commonly referred to as conopeptides or conotox...

  26. Supporting materials for: "VirAmp: A Galaxy-based viral genome assembly pipeline".

    ID: doi:10.5524/100113

    Release Date: 04-21-2015

    Description: We have developed a multi-step viral genome assembly pipeline named VirAmp, that combines existing tools and techniques and presents them to end users...

  27. Supporting data for the dynamics and stabilization of the Human gut microbiome during the first year of life.

    ID: doi:10.5524/100145

    Release Date: 05-14-2015

    Description: Here we performed metagenomic shotgun sequencing on fecal samples from 98 full-term Swedish infants (new born, 4-months and 12-months old) and their m...

  28. Supporting data for "Evaluating a multigene environmental DNAapproach for comprehensive biodiversityassessment"

    ID: doi:10.5524/100144

    Release Date: 10-21-2015

    Description: There is increasing demand for rapid biodiversity assessment tools that have broad taxonomic coverage. Traditional approaches typically rely on specia...

  29. Supporting data for "Addressing health disparities in Hispanic breast cancer: Accurate and inexpensive sequencing of BRCA1 and BRCA2"

    ID: doi:10.5524/100154

    Release Date: 08-26-2015

    Description: Germline mutations in the BRCA1 and BRCA2 genes account for 20 to 25% of inherited breast cancer and about 10% of all breast cancer cases. Detection o...

  30. 3-dimensional microCT reconstructions of brooding brittle stars

    ID: doi:10.5524/100130

    Release Date: 09-24-2015

    Description: Brooding brittle stars have a special reproduction mode of retaining their eggs and juveniles inside respiratory body-sacs called bursae. In the past,...

  31. Supporting material for: "Free breathingly acquired myocardial perfusion data sets for performance analysis of motion compensation algorithms"

    ID: doi:10.5524/100106

    Release Date: 10-22-2014

    Description: Perfusion quantification by using first-pass gadolinium-enhanced myocardial perfusion magnetic resonance imaging (MRI) has proved to be a reliable too...

  32. The genome of the saltwater crocodile (Crocodylus porosus)

    ID: doi:10.5524/100127

    Release Date: 10-29-2014

    Description: Saltwater crocodiles (Crocodylus porosus) are the largest reptilian species alive today and as the name suggests they shows a high tolerance to salini...

  33. Anguidae lizard (Ophisaurus gracilis) genome assembly data

    ID: doi:10.5524/100119

    Release Date: 03-25-2015

    Description: The evolutionary transition from a lizard-like body to a snake-like body form is one of the most important transformations in reptilian evolution. The...

  34. Validation Data For Capture-based whole genome promoter bisulfite-seq for 8 pairs of HCC tumor and non-tumor liver (NTL) samples

    ID: doi:10.5524/100120

    Release Date: 02-05-2015

    Description: Epigenetic alterations such as aberrant DNA methylation of promoter and enhancer regions that lead to atypical gene expression have been associated wi...

  35. Supporting material for: "Shared data for IMRT optimization research: the CORT dataset"

    ID: doi:10.5524/100110

    Release Date: 11-26-2014

    Description: Here we provide intensity modulation radiation therapy (IMRT) datasets for a prostate case, a liver case, a head and neck case, and a standard IMRT ph...

  36. Supporting data and materials for "Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural pr...

    ID: doi:10.5524/100151

    Release Date: 07-22-2015

    Description: The production of biogas takes place under anaerobic conditions and involves microbial decomposition of organic matter. Most of the participating micr...

  37. Data looking at methylation changes of intestinal genes in the neonatal period of preterm neonate pigs

    ID: doi:10.5524/100070

    Release Date: 09-01-2014

    Description: For this study, six term pigs were delivered close to full term (115–116 days gestation, by cesarean section) from two pregnant sows (Large White ×...

  38. Software and supporting material for: "SmileFinder: a resampling-based platform to evaluate signatures of selection from genome-wide sets of matching ...

    ID: doi:10.5524/100100

    Release Date: 11-05-2014

    Description: SmileFinder is a simple program that looks for the sweep patterns left by historic selection in genome-wide allele frequency datasets by evaluating th...

  39. Phylogenomic analyses data of the avian phylogenomics project

    ID: doi:10.5524/101041

    Release Date: 11-27-2014

    Description: Determining the evolutionary relationships of modern birds has been one of the biggest challenges in systematic biology. To address this challenge, we...

  40. Genomic data of the Great black cormorant (Phalacrocorax carbo)

    ID: doi:10.5524/101034

    Release Date: 04-22-2014

    Description: The Great Cormorant (Phalacrocorax carbo) is a widespread member of the cormorant family and is known by several different names around the world - th...

  41. Genomic data of the Northern Carmine bee-eater (Merops nubicus)

    ID: doi:10.5524/101029

    Release Date: 04-22-2014

    Description: The Northern Carmine Bee-eater (Merops nubicus) is part of the bee-eater family, Meropidae, and is also known as the Nubian bee-eater. It is a brightl...

  42. Genomic data of the Bald Eagle (Haliaeetus leucocephalus)

    ID: doi:10.5524/101040

    Release Date: 05-12-2014

    Description: The Bald Eagle (Haliaeetus leucocephalus(Linnaeus, 1766)) is the official emblem of the United States and it belongs to a group of birds known as fish...

  43. Whole-Genome Sequences of DA and F344 Rats with Different Susceptibilities to Arthritis, Autoimmunity, Inflammation and Cancer

    ID: doi:10.5524/100042

    Release Date: 05-29-2013

    Description: DA and F344 are two inbred rat strains with numerous dichotomous phenotypes, including susceptibility to autoimmune disease models and inflammatory r...

  44. Genomic data of Flax (Linum usitatissimum)

    ID: doi:10.5524/100081

    Release Date: 02-26-2014

    Description: Flax (Linum usitatissimum) is also known as linseed. It is an ancient crop that is widely cultivated as a source of fiber, oil and medicinally releva...

  45. Genome data from foxtail millet (Setaria italica)

    ID: doi:10.5524/100020

    Release Date: 05-28-2013

    Description: Foxtail millet (Setaria italica) (2n=18), is an annual grass grown both as cereal crop (grain production) and as forage food. It is primarily grown i...

  46. Genomic data of the Anna's Hummingbird (Calypte anna)

    ID: doi:10.5524/101004

    Release Date: 05-12-2014

    Description: The Anna's Hummingbird (Calypte anna (Lesson, 1829)) is a medium-sized hummingbird native to the west coast of North America and is the only North Ame...

  47. Genomic data from Chinese cabbage (Brassica rapa)

    ID: doi:10.5524/100021

    Release Date: 05-28-2013

    Description: Available here is genomic data for the polyploid plant Brassica rapa ssp. pekinensis line Chiifu-401-42, a Chinese cabbage. As there are several oil ...

  48. Genomic data for the domestic cucumber (Cucumis sativus var sativus L)

    ID: doi:10.5524/100025

    Release Date: 05-28-2013

    Description: Here we present genomic data for the domestic cucumber (Cucumis sativus var. sativus L.). The cucumber is a member of the Cucurbitaceae or cucurbit f...

  49. De novo high-coverage sequencing and annotated assemblies of the budgerigar genome

    ID: doi:10.5524/100059

    Release Date: 07-22-2013

    Description: Background: Parrots are considered one of the most behaviorally advanced vertebrate groups. They have an advanced ability of vocal learning. Parrots c...

  50. Example files and supporting material for "EMPeror: An interactive analysis and visualization tool for high throughput microbial ecology datasets."

    ID: doi:10.5524/100068

    Release Date: 11-23-2013

    Description: EMPeror is an interactive next generation tool for the analysis, visualization and understanding of high throughput microbial ecology datasets. Due to...

Displaying 50 of 866 results for " "