TGM3 | bioCADDIE Data Discovery Index
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Displaying 20 of 20 results for "TGM3"
  1. freshwater sediment metagenome : TGE sediments

    ID: PRJNA320998

    Keywords: raw sequence reads

    Access Type: download

  2. Role of Calcium Ions in the Activation and Activity of the Transglutaminase 3 Enzyme

    ID: PDB:1NUF

    Description: Protein-glutamine glutamyltransferase E (E.C.2.3.2.13)

  3. Role of Calcium Ions in the Activation and Activity of the Transglutaminase 3 Enzyme (2 calciums, 1 Mg, inactive form)

    ID: PDB:1NUG

    Description: Protein-glutamine glutamyltransferase E (E.C.2.3.2.13)

  4. Role of Calcium Ions in the Activation and Activity of the Transglutaminase 3 Enzyme (3 calciums, active form)

    ID: PDB:1NUD

    Description: Protein-glutamine glutamyltransferase E (E.C.2.3.2.13)

  5. Three-dimensional structure of the human transglutaminase 3 enzyme: binding of calcium ions change structure for activation

    ID: PDB:1L9M

    Description: Protein-glutamine glutamyltransferase E3 (E.C.2.3.2.13)

  6. Three-dimensional structure of the human transglutaminase 3 enzyme: binding of calcium ions change structure for activation

    ID: PDB:1L9N

    Description: Protein-glutamine glutamyltransferase E3 (E.C.2.3.2.13)

  7. Thermodesulfovibrio aggregans strain:TGE-P1 : Thermodesulfovibrio aggregans genome sequencing

    ID: PRJDB4394

    Keywords: Genome sequencing and assembly

    Access Type: download

    dataset.description: Genome sequencing of type strain (TGE-P1, JCM 13213, DSM 17283) of Thermodesulfovibrio aggregans, isolated from thermophilic sludge granules treating organic wastewa...
  8. laryngo-pharyngeal tumor RNA-seq study for both mRNA and miRNA

    ID: PRJNA281942

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: teinases along with SCEL, CRNN, KRT4, SPINK5, and TGM3 among others have significantly altered expression in these tumors. Alongside gene expression, the microRNAs hsa-miR-139, hsa-miR-203 and the hsa-miR-424/503 cluster have aberrant expression in these cancers. Using target genes for these microRNAs, we found the involvement of pathways linked to cell cycle, p53 signaling, and viral carcinogenesis significant ( *P*-values 10-13, 10-9 and 10-7 respectively). Finally, using an ensemble machine-learning tool, we discovered a unique 8-gene signature for this group of cancers that differentiates the group from the other subsites of head and neck. We investigated the role of promoter methylation in one of these genes, WIF1, and found no correlation between DNA methylation and down-regulation of WIF1. We validated our findings of gene expression, 8-gene signature and promoter methylation using q-PCR, data from TCGA and q-MSP respectively. Overall design: RNA-seq experiments in tumors of larynx and hypopharynx for discovery of gene and miRNA expression Please note that processed data files were not provided since they a...
  9. Tgl - a bacterial spore coat transglutaminase - cystamine complex

    ID: PDB:4PA5

    Description: Transglutaminase (E.C.2.3.2.13)

  10. Crystal structure of the GP42 transglutaminase from Phytophthora sojae

    ID: PDB:3TW5

    Description: Transglutaminase elicitor (E.C.2.3.2.13)

  11. Inhibition of transglutaminase 2 mitigates transcriptional dysregulation in models of Huntington disease

    ID: PRJNA126507

    Keywords: Transcriptome or Gene expression

    Access Type: download

  12. HUMAN FACTOR XIII, MUTANT W279F ZYMOGEN

    ID: PDB:1EX0

    Description: HUMAN COAGULATION FACTOR XIII (E.C. 2.3.2.13)

    datasetDistributions.storedIn: Protein Data Bank
  13. THREE-DIMENSIONAL STRUCTURE OF A TRANSGLUTAMINASE: HUMAN BLOOD COAGULATION FACTOR XIII

    ID: PDB:1GGT

    Description: N FACTOR XIII (A-SUBUNIT ZYMOGEN) (E.C.2.3.2.13) (PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE A CHAIN)...

  14. Novel mediators of eicosanoid and epithelial nitric oxide production in asthma

    ID: PRJNA110615

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: confirmed that two novel mediators trefoil factor 3 (TFF3) and transglutaminase 2 (TGM2) have increased expression in airways cells and secreted product in the airways. In vitro studies indicate that 1) TFF3 induces nitric oxide synthase in airway epithelial cells from asthmatics and 2) TGM2 augments the enzymatic activity of secreted phospholipase A2 (sPLA2) group X, an enzyme recently been implicated in asthma pathogenesis. Since PLA2 serves as the first rate-limiting step leading to eicosanoid generation, these results suggest that TGM2 may be a key initiator of the airway inflammatory cascade in asthma. Overall design: EIB positive and EIB negative subjects...
  15. CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF E.COLI CYTOTOXIC NECROTIZING FACTOR TYPE 1

    ID: PDB:1HQ0

    Description: CYTOTOXIC NECROTIZING FACTOR 1

    datasetDistributions.storedIn: Protein Data Bank
  16. CRYSTAL STRUCTURE OF THE INACTIVE C866S MUTANT OF THE CATALYTIC DOMAIN OF E. COLI CYTOTOXIC NECROTIZING FACTOR 1

    ID: PDB:1HZG

    Description: CYTOTOXIC NECROTIZING FACTOR 1

  17. HUMAN FACTOR XIII WITH YTTERBIUM BOUND IN THE ION SITE

    ID: PDB:1GGY

    Description: PROTEIN (COAGULATION FACTOR XIII) (2.3.2.13)

  18. Differentiation of Mesenchymal Glioblastoma Multiform by Bexarotene

    ID: PRJNA260057

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: of Krüppel-like factor 9 (KLF9), regulator of G-protein signaling 4 (RGS4), growth differentiation factor 15 (GDF15), angiopoietin-like protein 4 (ANGPTL4), and lowered the level of chemokine receptor type 4 (CXCR4). Both drugs also induced a potential oncogene, transglutaminase 2 (TG2), but the fold-change induced by bexarotene was considerably lesser than that by ATRA. Consistently, the TG2 activity in GBM was elevated several folds by ATRA. Because TG2 upregulation is correlated with tumor transformation and resistance, it is important to control its overexpression. Bexarotene does not upregulate TG2 as much as ATRA, and bexarotene showed in vivo tumoricidal effects in a GBM xenograft mouse model. Thus, these findings strongly suggest that bexarotene is more beneficial than ATRA and should be considered as a differentiation therapeutic agent for mesenchymal GBM. Overall design: Mesenchymal GBM cell line (total 12 samples) : (a) Control (0.1% DMSO)...
  19. Gene expression profiling of ATRA-differentiated wild-type and TG2 knockout NB4 cells

    ID: PRJNA130897

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: One of the most induced genes in APL NB4 cells is transglutaminase 2 (TG2). RNAi-mediated stable silencing of TG2 in NB4 cells (TG2-KD NB4) coupled with whole genome microarray analysis revealed that TG2 is involved in the expression of a large number of ATRA-regulated genes. The affected genes participate in granulocyte functions and their silencing lead to reduced adhesive, migratory and phagocytic capacity of neutrophils and less superoxide production. The expression of genes related to cell cycle control also changed, sugge...
  20. Identification of differentially expressed genes in Fibrogenesis imperfecta ossium via Global microarray analysis

    ID: PRJNA187925

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: edimentation rate12 mm for 1st hour. Mean ± SD (3 values) serum calcium (Ca) adjusted for albumin was 9.5 ± 1.3 mg/dl (reference range: 8.5 - 11mg/dl). Serum phosphate (PO4) was 3.5 ± 0.3 mg/dl (reference range 3.5-5.0 mg/dl), serum magnesium 1.6mg/dl (reference range 1.58-2.55 mg/dl), total alkaline phosphatase (AP) 39.6 ± 2.6 KA Units (reference range: 3 – 13 KA Units), serum creatinine (Cr) was 1.1 mg/dl. Liver function tests were normal. Twenty four hour mean urine Ca, and phosphorus was 65.3 and 563 mg/d, respectively. The renal tubular handling of phosphate was normal (TmP/GFR 4.2 mg/dl – normal 2.4-4.2). The serum intact parathyroid hormone (iPTH) level by immunochemilunometry was 19 pg/ml (reference range: 10-69 pg/ml).Serum 25-hydroxyvitamin D level was 59.9( reference range 9 – 37 ng/ml). Serum 1,25-hydroxyvitamin D level was 76.6 ng/ml (reference range – 3 ng/ml). Arterial blood gases and urine pH were within normal range. Thyroid function tests were normal. Serum ...

Displaying 20 of 20 results for "TGM3"