RAB38 | bioCADDIE Data Discovery Index
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Displaying 20 of 28 results for "RAB38"
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  1. Trans. Profiling of Immortalized Melanocyte Cell Lines Identifies GPNMB as a Melanoblast-Expressed, MITF-Dependent Gene ArrayExpress

    ID: E-GEOD-10163

    Description: “ Tyrp1b/ b (melan-Ink4a-b) and “chocolate” Rab38 cht/cht (melan-cht) melanocyte derived lines. We observed alterations in gene expression consistent with a physiological response of melan-Ink4a-b cells to endoplasmic reticulum protein-folding impairment. Additionally, a set of loci was identified that are expressed in a similar manner to known melanocyte genes. Importantly, the collection of 254 genes is enriched for expression in...

  2. Additional file 2: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective Figshare

    ID: doi:10.6084/M9.FIGSHARE.C.3628298_D2

    Release Date: 12-15-2016

    Description: Database of sequences used in phylogeny of Fig.  1 . (TXT 14 kb)

  3. Trans. Profiling of Immortalized Melanocyte Cell Lines Identifies GPNMB as a Melanoblast-Expressed, MITF-Dependent Gene OmicsDI

    ID: E-GEOD-10163

    Date Released: 05-01-2014

    Description: “ Tyrp1b/ b (melan-Ink4a-b) and “chocolate” Rab38 cht/cht (melan-cht) melanocyte derived lines. We observed alterations in gene expression consistent with a physiological response of melan-Ink4a-b cells to endoplasmic reticulum protein-folding impairment. Additionally, a set of loci was identified that are expressed in a similar manner to known melanocyte genes. Importantly, the collection of 254 genes is enriched for expression in...

  4. Additional file 10: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective Figshare

    ID: doi:10.6084/M9.FIGSHARE.C.3628298_D1

    Release Date: 12-15-2016

    Description: Zebrafish ESTs available in NCBI database. (XLSX 10.5 kb)

  5. Additional file 4: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective Figshare

    ID: doi:10.6084/M9.FIGSHARE.C.3628298_D7

    Release Date: 12-15-2016

    Description: Database of sequences used in phylogeny of Additional file 3 . (TXT 5 kb)

  6. Additional file 1: of Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective Figshare

    ID: doi:10.6084/M9.FIGSHARE.C.3628298_D10

    Release Date: 12-15-2016

    Description: Accession number of sequences used in the evolutionary analysis. (XLSX 19 kb)

  7. Trans. Profiling of Immortalized Melanocyte Cell Lines Identifies GPNMB as a Melanoblast-Expressed, MITF-Dependent Gene BioProject

    ID: PRJNA108359

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: “ Tyrp1b/ b (melan-Ink4a-b) and “chocolate” Rab38 cht/cht (melan-cht) melanocyte derived lines. We observed alterations in gene expression consistent with a physiological response of melan-Ink4a-b cells to endoplasmic reticulum protein-folding impairment. Additionally, a set of loci was identified that are expressed in a similar manner to known melanocyte genes. Importantly, the collection of 254 genes is enriched for expression in...
  8. ANR27_PONAB UniProt:Swiss-Prot

    ID: Q5REW9

    Description: yrin repeat domain-containing protein 27 VPS9 ANK 1 ANK 2 ANK 3 ANK 4 ANK 5 ANK 6 ANK 7 ANK 8 ANK 9 ANK 10 ANK 11 Sufficient for GEF activity towards RAB21 Sufficient for interaction w...

  9. 5687688 RGD

    Description: y transposon expressing the wild type (BN strain) Rab38 coding sequence under the control of the ubiquitous chicken-actin-globin (CAG) promoter was injected into FHH embryos with a mRNA source of t...

    Creators: Medical College of Wisconsin, Milwaukee, Wisconsin

  10. 5688090 RGD

    Description: ZFN mutant founders were backcrossed with FHH.BN-(D1Hmgc14-D1Hmgc15)/Mcwi to get heterozygous offsprings which were intercrossed and offsprings...

    Creators: PhysGen Knockouts

    biologicalEntity.identifiers: FHH.BN-(D1Hmgc14-D1Hmgc15)/Mcwi-Rab38em1Mcwi+/+
  11. 5688087 RGD

    Description: ZFN mutant founders were backcrossed with FHH.BN-(D1Hmgc14-D1Hmgc15)/Mcwi to get heterozygous offspring which were intercrossed and offspring m...

    Creators: PhysGen Knockouts

    biologicalEntity.identifiers: FHH.BN-(D1Hmgc14-D1Hmgc15)/Mcwi-Rab38em1Mcwi-/-
  12. 5687689 RGD

    Description: y transposon expressing the wild type (BN strain) Rab38 coding sequence under the control of the ubiquitous chicken-actin-globin (CAG) promoter was injected into FHH embryos with a mRNA source of t...

    Creators: Medical College of Wisconsin, Milwaukee, Wisconsin

  13. 8661235 RGD

    Description: promoter driving the Brown Norway allele cDNA for Rab38 along with mRNA encoding the SB100X transposase. The transposon inserted into rat chromosome 14 near 13.2 Mb (rn4)...

    Creators: Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin

  14. Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma BioProject

    ID: PRJNA271032

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ranscription read-through. We identified the BCL2 oncogene as one of such invaded genes and detected a novel chimera, the CTSC-RAB38, in 20% of ccRCC samples. Collectively, our data highlight a novel link between transcription read-through and aberrant expression of oncogenes and chimeric transcripts that is prevalent in cancer. Overall design: RNA-seq of SETD2 mutant and wild-type ccRCC cell lines....
  15. 4139877 RGD

    Description: i>)/Mcwi rat embryos. The resulting mutation is a 1-bp frameshift deletion in exon 1....

    Creators: PhysGen Knockouts

  16. MGH (CMT) Growth Inhibition Assay Protocol (9 compound doses: 0.512 uM to 0.002 uM) -- DNA Staining LINCS

    Data Type: Imaging Cytological profile

    Assay: Fluorescence imaging cell growth inhibition assay

    Biological Process: Cell proliferation

    ID: EDS-1007

    cellLine.name: NY
  17. MGH (CMT) Growth Inhibition Assay Protocol (9 compound doses: 64 nM to 0.25 nM) -- DNA Staining LINCS

    Data Type: Imaging Cytological profile

    Assay: Fluorescence imaging cell growth inhibition assay

    Biological Process: Cell proliferation

    ID: EDS-1009

    cellLine.name: NY
  18. MGH (CMT) Growth Inhibition Assay Protocol (9 compound doses: 32 uM to 0.125 uM) -- DNA Staining LINCS

    Data Type: Imaging Cytological profile

    Assay: Fluorescence imaging cell growth inhibition assay

    Biological Process: Cell proliferation

    ID: EDS-1012

    cellLine.name: NY
  19. MGH (CMT) Growth Inhibition Assay Protocol (9 compound doses: 1.024 uM to 0.004 uM) -- DNA Staining LINCS

    Data Type: Imaging Cytological profile

    Assay: Fluorescence imaging cell growth inhibition assay

    Biological Process: Cell proliferation

    ID: EDS-1006

    cellLine.name: NY
  20. Biology of human melanoma ArrayExpress

    ID: E-GEOD-17275

    Description: NA from 5 human cutaneous melanoma cell lines (SK-MEL 05; 17; 28; 37 and 188, kindly provided by Dr. Alan Houghton, MSKCC, New York, NY, USA). We used glass arrays containing 4.800 cDNA sequences (Brentani et al. 2003) were prepared in our lab with the aid of the Flexys robot17 (Genomic Solutions, Cambridgeshire, United Kingdom). The list of immobilized genes can be obtained at GEO, accession number GPL1930. Pre-hybridization, hybridization and washing were performed as previously described (Gomes et al. 2003; 2005), and slides were scanned on a laser scanner (ScanArray Express, PerkinElmer Life Sciences, Boston, MA). Data were extracted with ScanArray Express software (PerkinElmer Life Sciences, Boston, MA) using the histogram method....


Displaying 20 of 28 results for "RAB38"