HCG21 | bioCADDIE Data Discovery Index
Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Displaying 20 of 34 results for "HCG21"
i
  1. Gene expression analysis to identify target genes of miR-150 in Burkitt lymphma cell lines BioProject

    ID: PRJNA341858

    Keywords: Transcriptome or Gene expression

    Access Type: download

  2. Homo sapiens : Analysis of chromatin marks at TERRA locus BioProject

    ID: PRJDB4219

    Keywords: Other

    Access Type: download

    dataset.description: TERRA is long non-coding RNA transcribed from telomere although telomeres are heterochromatin where is enri...
  3. NAseq and RIBOseq – ryhB encodes the regulatory RNA RyhB and a peptide, RyhP... BioProject

    ID: PRJNA375739

    Keywords: Other

    Access Type: download

  4. Genomewide analysis of the human p53 transcriptional network unveils a lncRNA tumor suppressor signature (RNA-seq) ArrayExpress

    ID: E-GEOD-58507

    Description: with special attention in those regions that are non coding and are differentially expressed by the DNA damage drug. Description of the p53 transcriptome in HCT116 colon cancer cell line. The RNA-seq libraries were prepared from purified poly-A+ RNA from untreated and 5-Fluorouracil treated p53 +/+ HCT116 cells for 4 and 12h, including two independent samples for the time 12h. Paired-end and strand specific RNA sequencing libraries were prepared according to Illumina inst...

  5. Genomewide analysis of the human p53 transcriptional network unveils a lncRNA tumor suppressor signature (RNA-seq) BioProject

    ID: PRJNA252833

    Keywords: Transcriptome or Gene expression

    Access Type: download

  6. Data from: A non-lethal sampling method to obtain, generate and assemble whole-blood transcriptomes from small, wild mammals Dryad

    DateIssued: 01-05-2016

    Description: ble the whole blood transcriptome, using Illumina RNA-Seq, from wild greater mouse-eared bats (Myotis myotis). For optimal results, both ribosomal and globin RNAs must be removed before library construction. Treatment of DNase is recommended but not required enabling the use of smaller amounts of starting RNA. A large proportion of protein-coding genes (61%) in the genome were expressed in the blood transcriptome, comparable to brain (65%), kidney (63%) and liver (58%) transcriptomes, and up to 99% of the mitogenome (excluding D-loop) was recovered in the RNA-Seq data. In conclusion, this nonlethal blood sampling method provides an opportunity for a genomewide transcriptomic study of small, endangered or critically protected species, without sacrificing any individuals....

  7. A Genome-Wide Characterization of MicroRNA Genes in Maize OmicsDI

    ID: E-GEOD-17943

    Date Released: 08-21-2013

    Description: MicroRNAs (miRNAs) are small non-coding RNAs that play essential roles in plant growth and development. We conducted a genome-wide survey of ...

  8. Data from: Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective co... Dryad

    DateIssued: 11-05-2012

    Description: 19 PUTs (putative unique transcripts) longer than 150 bp in this reference assembly, 83.5% show similarity to ESTs from other spruce species and of the remaining PUTs, 3,704 show similarity to protein sequences from other plant species, leaving 4,167 PUTs with limited similarity to currently available plant proteins. By predicting coding frames and comparing not only the Norway spruce PUTs, but also PUTs from the close relatives Picea glauca and Picea sitchensis to both Pinus taeda and Taxus mairei, we obtained estimates of synonymous and non-synonymous divergence among conifer species. In addition, we detected close to 15,000 SNPs of high quality and estimated gene expression differences between samples collected under dark and light conditions. CONCLUSIONS: Our study yielded a large number of single nucleotide polymorphisms as well as estimates of gene expression on transcriptome scale. In agreement with a recent study we find that the synonymous substitution rate per year (0.6 x 10-09 and 1.1 x 10-09) is an order of magnitude smaller than values reported for angiosperm herbs...

  9. A Genome-Wide Characterization of MicroRNA Genes in Maize ArrayExpress

    ID: E-GEOD-17943

    Description: MicroRNAs (miRNAs) are small non-coding RNAs that play essential roles in plant growth and development. We conducted a genome-wide survey of ...

  10. Iodine-131 Biomarker Identification in the Rat Thyroid Gland ArrayExpress

    ID: E-GEOD-66623

    Description: male Sprague Dawley rats were i.v. injected with 150 µl saline solution containing 9.0, 88, 170, 260, 340, 760, 1300, or 4700 kBq (group A-H) 131I, or mock-treated with 150 µl saline solution only, and killed at 24 h after injection. Total RNA was extracted from individual thyroid tissue samples thyroids and mRNA levels were determined with the Agilent microarray platform. Results Estimated absorbed doses in treatment groups A-H was 0.0058, 0.057, 0.11, 0....

  11. Adenoviridae : Medium sized, non-enveloped viruses with linear, non-segmented double-stranded DNA genome BioProject

    ID: PRJNA16846

    Access Type: download

  12. Zea mays : Zea mays Transcriptome or Gene expression BioProject

    ID: PRJNA119855

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: MicroRNAs (miRNAs) are small non-coding RNAs that play essential roles in plant growth and development. We conducted a genome-wide survey of ...
  13. Promiscuous RNA binding by PRC2 ArrayExpress

    ID: E-GEOD-50177

    Description: Polycomb repressive complex-2 (PRC2) is a histone methyltransferase required for epigenetic silencing during development and cancer. Long

  14. rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome ArrayExpress

    ID: E-GEOD-77282

    Description: RNA structures are of crucial importance for biological function and gene regulation. Guanine (G)-rich sequences in RNA

  15. Next Generation Sequencing identifies Cdh11 and Mrc1 as novel translational biomarkers of kidney fibrosis OmicsDI

    ID: E-GEOD-65267

    Date Released: 12-08-2015

    Description: when significant loss has already happened. Using RNA sequencing in a mouse model of folic acid (FA) induced nephropathy, here we report the identification of 10 genes that track kidney fibrosis development, the common pathological finding in CKD patients. The gene expression of all 10 candidates ...

  16. Iodine-131 Biomarker Identification in the Rat Thyroid Gland BioProject

    ID: PRJNA277472

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: male Sprague Dawley rats were i.v. injected with 150 µl saline solution containing 9.0, 88, 170, 260, 340, 760, 1300, or 4700 kBq (group A-H) 131I, or mock-treated with 150 µl saline solution only, and killed at 24 h after injection. Total RNA was extracted from individual thyroid tissue samples thyroids and mRNA levels were determined with the Agilent microarray platform. Results Estimated absorbed doses in treatment groups A-H was 0.0058, 0.057, 0.11, 0....
  17. Modulation of the osteosarcoma expression phenotype by miRNAs [Illumina] ArrayExpress

    ID: E-GEOD-28424

    Description: ry malignant tumors of bone and show multiple and complex genomic aberrations. miRNAs are non-coding RNAs capable of regulating gene expression at the post transcriptional level, and miRNAs and ...

  18. rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome BioProject

    ID: PRJNA309998

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: RNA structures are of crucial importance for biological function and gene regulation. Guanine (G)-rich sequences in RNA
  19. A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation ArrayExpress

    ID: E-MTAB-4088

    Description: RNA-seq was performed in biological replicates (2 mice per group) of wild-type and lincRNA-EPS-/- BMDMs at 0, 2,...

  20. Promiscuous RNA binding by PRC2 BioProject

    ID: PRJNA217298

    Keywords: Other

    Access Type: download


Displaying 20 of 34 results for "HCG21"