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Displaying 20 of 23 results for "HAR1B"
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  1. RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles BioProject

    ID: PRJNA283127

    Keywords: Other

    Access Type: download

  2. RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles ArrayExpress

    ID: E-GEOD-68559

    Description: We used RNA sequencing to analyze transcript profiles of ten autopsy brain regions from ten subjects. RNA sequencing tec...

  3. o-environment on the expression of messengers and long non-coding RNAs in the bovine blastocyst... ArrayExpress

    ID: E-GEOD-27872

    Description: vel candidates that were thus expressed were from intergenic regions. The function of this long non-coding RNA remains unknown but points clearly to an additional level of complexity in early embryo development. For all ten in vitro systems and the in vivo counterparts, three biological replicates were done. Technical duplicates for each of these 33 samples were analyzed to generate a dataset composed of 65 microarray hybridizations (one of the replicated array failed). During analysis, the in vivo derived blastocysts were used as reference. Following data pre-processing (that includes, background subtraction, intra-array normalization (Loess) and inter-array normalization (Quantile), all technical replication (replicated spots on the array and technically replicated arrays) were combined to generate a single value (duplicated spots were averaged and the median was drawn from duplicated arrays) that was used for dowstream significance analysis....

  4. o-environment on the expression of messengers and long non-coding RNAs in the bovine blastocyst... BioProject

    ID: PRJNA138021

    Keywords: Transcriptome or Gene expression

    Access Type: download

  5. T-TRAP Profiling Reveals Dynamic Changes in the Transcriptome during Circuit Assembly BioProject

    ID: PRJNA245901

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ication (T-TRAP) of mRNA from R cells followed by RNA-seq for multiple time points during development to follow gene expression during target selection and synapse formation. Methods: We chose a ribosome trap method by modifying the N-terminus of the Drosophila ribosomal protein RpL10 with two tandemly arranged epitopes, 3X ...
  6. RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles OmicsDI

    ID: E-GEOD-68559

    Date Released: 09-05-2015

    Description: We used RNA sequencing to analyze transcript profiles of ten autopsy brain regions from ten subjects. RNA sequencing tec...

  7. Data from: A non-lethal sampling method to obtain, generate and assemble whole-blood transcriptomes from small, wild mammals Dryad

    DateIssued: 01-05-2016

    Description: ble the whole blood transcriptome, using Illumina RNA-Seq, from wild greater mouse-eared bats (Myotis myotis). For optimal results, both ribosomal and globin RNAs must be removed before library construction. Treatment of DNase is recommended but not required enabling the use of smaller amounts of starting RNA. A large proportion of protein-coding genes (61%) in the genome were expressed in the blood transcriptome, comparable to brain (65%), kidney (63%) and liver (58%) transcriptomes, and up to 99% of the mitogenome (excluding D-loop) was recovered in the RNA-Seq data. In conclusion, this nonlethal blood sampling method provides an opportunity for a genomewide transcriptomic study of small, endangered or critically protected species, without sacrificing any individuals....

  8. Gene expression profiling reveals novel molecular marker candidates of laryngeal squamous cell carcinoma GEMMA

    ID: 1268

    Keywords: functional genomics

    Description: s of clinical samples from15 larynx tumors and 10 non-neoplastic larynx tissue using a custom-built cDNA microarray containing 332 probes for 285 genes previously identified as up- or down-regulated in head and neck tumors by the Head and Neck Annotation Consortium (Reis et al., Cancer Res 65:1693-99, 2005). Thirty-five genes showed statistically significant d...

  9. Transcriptome mapping and Hfq RIP-seq of Neisseria meningitidis BioProject

    ID: PRJNA337954

    Keywords: Other

    Access Type: download

    dataset.description: Neisseria meningitidis is a human commensal that occasionally causes life-threatening infections such as bacterial meningitis and septicemia. Despite experimen...
  10. The Transcriptionally Active Regions in the Genome of Bacillus subtilis ArrayExpress

    ID: E-GEOD-16086

    Description: ently annotated and additionally we find 44 novel protein-coding genes, 85 putative non-coding RNAs (ncRNAs) and 184 antisense transcripts. Hybridization of labeled genomic DNA (gDNA) has revealed a few thousand regions giving rise to very low signals. These are mostly caused by sequence errors, as is observed in the highly degenerate trp operon and the folding of stable structures such as the regions containing Rho-independent terminators. Through this work we have discovered a group of membrane-associated genes, among these having a long

  11. The Transcriptionally Active Regions in the Genome of Bacillus subtilis OmicsDI

    ID: E-GEOD-16086

    Date Released: 03-27-2012

    Description: ently annotated and additionally we find 44 novel protein-coding genes, 85 putative non-coding RNAs (ncRNAs) and 184 antisense transcripts. Hybridization of labeled genomic DNA (gDNA) has revealed a few thousand regions giving rise to very low signals. These are mostly caused by sequence errors, as is observed in the highly degenerate trp operon and the folding of stable structures such as the regions containing Rho-independent terminators. Through this work we have discovered a group of membrane-associated genes, among these having a long

  12. The Transcriptionally Active Regions in the Genome of Bacillus subtilis BioProject

    ID: PRJNA115513

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ently annotated and additionally we find 44 novel protein-coding genes, 85 putative non-coding RNAs (ncRNAs) and 184 antisense transcripts. Hybridization of labeled genomic DNA (gDNA) has revealed a few thousand regions giving rise to very low signals. These are mostly caused by sequence errors, as is observed in the highly degenerate trp operon and the folding of stable structures such as the regions containing Rho-independent terminators. Through this work we have discovered a group of membrane-associated genes, among these having a long
  13. Contribution of natural antisense transcription to an endogenous siRNA signature in human cells ArrayExpress

    ID: E-GEOD-52996

    Description: includes transcripts from the opposite strand of protein coding genes, so called natural antisense transcripts (NATs). Here, we test the hypothesis that antisense transcription triggers RNA interference and gives rise to endogenous short RNAs (endo-siRN...

  14. Transcription profiling by array of human conjunctival epithelial side population cells ArrayExpress

    ID: E-GEOD-12631

    Description: type. Four overnight cultures of freshly isolated human conjunctival epithelial cells stained with Hoechst 3342 were cytometrically sorted into SP and non-SP cohorts. RNA was isolated and processed for microarray analysis using a commercial oligonucleotide array representing more than 55,000 transcripts derived from about 30,000 different genes. Selected microarray results were validated at the gene and protein levels by quantitative PCR, and immunological methods. Data mining methods were used to i...

  15. Contribution of natural antisense transcription to an endogenous siRNA signature in human cells OmicsDI

    ID: E-GEOD-52996

    Date Released: 05-31-2014

    Description: includes transcripts from the opposite strand of protein coding genes, so called natural antisense transcripts (NATs). Here, we test the hypothesis that antisense transcription triggers RNA interference and gives rise to endogenous short RNAs (endo-siRN...

  16. Gene expression profiling reveals novel molecular marker candidates of laryngeal squamous cell carcinoma BioProject

    ID: PRJNA108497

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: s of clinical samples from15 larynx tumors and 10 non-neoplastic larynx tissue using a custom-built cDNA microarray containing 332 probes for 285 genes previously identified as up- or down-regulated in head and neck tumors by the Head and Neck Annotation Consortium (Reis et al., Cancer Res 65:1693-99, 2005). Thirty-five genes showed statistically significant d...
  17. Contribution of natural antisense transcription to an endogenous siRNA signature in human cells BioProject

    ID: PRJNA230643

    Keywords: Transcriptome or Gene expression

    Access Type: download

  18. Promiscuous RNA binding by PRC2 ArrayExpress

    ID: E-GEOD-50177

    Description: igenetic silencing during development and cancer. Long non-coding RNAs (lncRNAs) recruit PRC2 to chromatin, but the general role of RNA in maintaining repressed chromatin is unknown. ChIP-seq, combined with ...

  19. Molecular profiling of the of conjunctival epithelial side population cells BioProject

    ID: PRJNA112805

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: type. Four overnight cultures of freshly isolated human conjunctival epithelial cells stained with Hoechst 3342 were cytometrically sorted into SP and non-SP cohorts. RNA was isolated and processed for microarray analysis using a commercial oligonucleotide array representing more than 55,000 transcripts derived from about 30,000 different genes. Selected microarray results were validated at the gene and protein levels by quantitative PCR, and immunological methods. Data mining methods were used to i...
  20. Promiscuous RNA binding by PRC2 BioProject

    ID: PRJNA217298

    Keywords: Other

    Access Type: download


Displaying 20 of 23 results for "HAR1B"