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Displaying 20 of 116 results for "DOK5"
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  1. EVcomplex Supplementary Data: Protein-protein docking Dryad

    DateIssued: 10-02-2014

    Description: chive containing the input files used for HADDOCK docking and the best models for each of the docking runs....

  2. Crystal Structure Analysis of the Dok-5 PTB Domain PDB

    ID: PDB:1J0W

    Description: downstream of tyrosine kinase 5 (E.C.2.7.1.112)

  3. agonist and inverse agonist ligands at serotonin 5-HT2C G protein-coupled receptors: computational ligand docking and molecular dynamics studies validated b... Figshare

    ID: doi:10.6084/M9.FIGSHARE.1162520

    Release Date: 03-10-2016

    Description:

  4. agonist and inverse agonist ligands at serotonin 5-HT2C G protein-coupled receptors: computational ligand docking and molecular dynamics studies validated b... Figshare

    ID: doi:10.6084/M9.FIGSHARE.1162520.V1

    Release Date: 03-10-2016

    Description:

  5. agonist and inverse agonist ligands at serotonin 5-HT2C G protein-coupled receptors: computational ligand docking and molecular dynamics studies validated b... Figshare

    ID: doi:10.6084/M9.FIGSHARE.1162520.V2

    Release Date: 03-10-2016

    Description:

  6. The MID-PIWI module of Piwi proteins specifies nucleotide- and strand-biases of piRNAs ArrayExpress

    ID: E-GEOD-55451

    Description: e of the MID domain from a Piwi Argonaute and use docking experiments to show its ability to specify recognition of 5′ uridine (1U-bias) of piRNAs. Mutational analyses reveal the importance of 5’ end-recognition within the MID domain for piRNA biogenesis in vivo. Finally, domain-swapping experiments uncover an unexpected role for the MID-PIWI module of a Piwi protein in dictating the strand-orientation of its bound piRNAs. Our work identifies structural features that allow distinguishing individual Piwi members during piRNA biogenesis Immunoprecipitated small RNA were purified from Bmn4 cells for preparation of high-throughput seque...

  7. udouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit... PDB

    ID: PDB:1R3E

    Description: tRNA pseudouridine synthase B (E.C. 4.2.1.70)/RNA Complex

  8. The MID-PIWI module of Piwi proteins specifies nucleotide- and strand-biases of piRNAs BioProject

    ID: PRJNA239665

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: e of the MID domain from a Piwi Argonaute and use docking experiments to show its ability to specify recognition of 5′ uridine (1U-bias) of piRNAs. Mutational analyses reveal the importance of 5’ end-recognition within the MID domain for piRNA biogenesis in vivo. Finally, domain-swapping experiments uncover an unexpected role for the MID-PIWI module of a Piwi protein in dictating the strand-orientation of its bound piRNAs. Our work identifies structural features that allow distinguishing individual Piwi members during piRNA biogenesis Overall design: Immunoprecipitated small RNA were purified from Bmn4 cells for preparation of high-...
  9. The gene sml0013 of Synechocystis sp. strain PCC 6803 encodes for a novel subunit of the NDH1 complex that is ubiquitous distributed among cyanobacter... ArrayExpress

    ID: E-GEOD-48415

    Description: NDH1 complex, the subunits catalysing the NAD(P)H docking and oxidation are still missing. The gene sml0013 of Synechocystis 6803 encodes for a small protein of unknown function for that homologs exist in all completely known cyanobacterial genomes. The protein exhibits weak similarities to the NDF6 protein, which was reported from Arabidopsis chloroplasts as a NDH subun...

  10. SRPK1 bound to 9mer docking motif peptide PDB

    ID: PDB:1WBP

    Description: SERINE/THREONINE-PROTEIN KINASE SPRK1 (E.C.2.7.1.37), MEMBRANE-ASSOCIATED GUANYLATE KINASE, WW AND PDZ DOMAIN-CONTAINING PROTEIN ...

  11. Crystal structure of Fus3 with a docking motif from Ste7 PDB

    ID: PDB:2B9H

    Description: Mitogen-activated protein kinase FUS3 (E.C.2.7.1.37), Serine/threonine-protein kinase STE7

  12. Structural-, Kinetic- and Docking Studies of Artificial Imine Reductases Based on the Biotin-Streptavidin Technology: An Induced Lock-and-Key Hypothesis... PDB

    ID: PDB:4OKA

    Description: Streptavidin

  13. The MID-PIWI module of Piwi proteins specifies nucleotide- and strand-biases of piRNAs OmicsDI

    ID: E-GEOD-55451

    Date Released: 09-07-2014

    Description: e of the MID domain from a Piwi Argonaute and use docking experiments to show its ability to specify recognition of 5′ uridine (1U-bias) of piRNAs. Mutational analyses reveal the importance of 5’ end-recognition within the MID domain for piRNA biogenesis in vivo. Finally, domain-swapping experiments uncover an unexpected role for the MID-PIWI module of a Piwi protein in dictating the strand-orientation of its bound piRNAs. Our work identifies structural features that allow distinguishing individual Piwi members during piRNA biogenesis Immunoprecipitated small RNA were purified from Bmn4 cells for preparation of high-throughput seque...

  14. Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping ArrayExpress

    ID: E-GEOD-21068

    Description: region by bringing 14 distant loci to focal ESR1-docking sites for coordinate repression. However, the plasticity of this free DNA movement was reduced in breast cancer cells. Together with the acquisition of DNA methylation and repressive chromatin modifications at the 16p11.2 loci, an inflexible DNA scaffold may be a novel determinant used by breast cancer cells to reinforce estrogen-mediated repression. ChIP-seq: E2-preexposed or DMSO-preexposed mammosphere-derived epithelial cells (MDECs); MCF-7 cells with 4hr of DMSO or E2 stimulation. MeDIP-chip: Methylated DNA from MCF7 cells was immunoprecipitated by the antibody against 5-methyl cytidine. The immunoprecipitated methylated DNA fragments were processed by the NimbleGen Methylation Microarray Service. Methylation analysis was performed on the NimbleGen Two-Array HG18 Promoter Set. mRNA profiling by array: Four sets of total RNA samples from the mammary gland of each 50-day-old rat ...

  15. Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map PDB

    ID: PDB:4V5Z

    Description: PROTEIN/RNA Complex

  16. 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.... PDB

    ID: PDB:4V4B

    Description: 80S RIBOSOME

  17. Crystal structure of Fus3 with a docking motif from Far1 PDB

    ID: PDB:2B9J

    Description: Mitogen-activated protein kinase FUS3 (E.C.2.7.1.37), Cyclin-dependent kinase inhibitor FAR1

  18. Crystal structure of Fus3 with a docking motif from Msg5 PDB

    ID: PDB:2B9I

    Description: Mitogen-activated protein kinase FUS3 (E.C.2.7.1.37), Tyrosine-protein phosphatase MSG5 (E.C.3.1.3.48)

  19. The gene sml0013 of Synechocystis sp. strain PCC 6803 encodes for a novel subunit of the NDH1 complex that is ubiquitous distributed among cyanobacter... OmicsDI

    ID: E-GEOD-48415

    Date Released: 06-03-2014

    Description: NDH1 complex, the subunits catalysing the NAD(P)H docking and oxidation are still missing. The gene sml0013 of Synechocystis 6803 encodes for a small protein of unknown function for that homologs exist in all completely known cyanobacterial genomes. The protein exhibits weak similarities to the NDF6 protein, which was reported from Arabidopsis chloroplasts as a NDH subun...

  20. The gene sml0013 of Synechocystis sp. strain PCC 6803 encodes for a novel subunit of the NDH1 complex that is ubiquitous distributed among cyanobacter... BioProject

    ID: PRJNA209987

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: NDH1 complex, the subunits catalysing the NAD(P)H docking and oxidation are still missing. The gene sml0013 of Synechocystis 6803 encodes for a small protein of unknown function for that homologs exist in all completely known cyanobacterial genomes. The protein exhibits weak similarities to the NDF6 protein, which was reported from Arabidopsis chloroplasts as a NDH subun...

Displaying 20 of 116 results for "DOK5"