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Displaying 20 of 58 results for "CLCN6"
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  1. Transcription profiling by array of hippocampus from CIC-6 knock-out mice ArrayExpress

    ID: E-MEXP-731

    Description: 3 pairs of wt and ClC-6 knockout mice, RNA from p14 hippocampus

  2. CLCN6_RABIT UniProt:Swiss-Prot

    ID: Q9TT16

    Description: Chloride transport protein 6 Cytoplasmic Helical Helical Helical Helical Helical Helical Helical Helical Helical...

  3. CLCB_ARATH UniProt:Swiss-Prot

    ID: P92942

    Description: Chloride channel protein CLC-b Helical; Name=1 Helical; Name=2 Helical; Name=3 Helical; Name=...

  4. Individual of Crella elegans with larvae in its tissue Dryad

    DateIssued: 02-26-2013

    Description: October'09 and fixed in RNAlater. Assembled with CLC Genomics Workbench 4.6.1 (CLC bio, Aarhus, Denmark)....

  5. merge_CLCv6_SNP_files_with_SAM_files script Dryad

    DateIssued: 04-13-2015

    Description: python script merges the SNP detection results of CLC(version6 or higher) with the information in SAM files from CLC version 6 or higher. This scrip...

  6. Reference transcriptome obtained by pooling reads from three different life stages of Crella elegans (individual with larvae, individual with spematic... Dryad

    DateIssued: 02-26-2013

    Description: e samples were pooled together and assembled with CLC Genomics Workbench 4.6.1 (CLC bio, Aarhus, Denmark)....

  7. Individual of Crella elegans with spermatic cysts Dryad

    DateIssued: 02-26-2013

    Description: on April'10 and fixed in RNAlater. Assembled with CLC Genomics Workbench 4.6.1 (CLC bio, Aarhus, Denmark)....

  8. Non-reproductive stage of Crella elegans Dryad

    DateIssued: 02-26-2013

    Description: on March'10 and fixed in RNAlater. Assembled with CLC Genomics Workbench 4.6.1 (CLC bio, Aarhus, Denmark)....

  9. Transcription profiling by array of hippocampus from CIC-6 knock-out mice OmicsDI

    ID: E-MEXP-731

    Date Released: 08-06-2014

    Description: 3 pairs of wt and ClC-6 knockout mice, RNA from p14 hippocampus

  10. DNA3890 de novo assembly Dryad

    DateIssued: 02-10-2017

    Description: List of contigs generated from the de novo assembly in CLC Genomics Workbench

  11. mRNA sequencing of two brain regions (prefrontal cortex and hippocampus) and left myocardial tissue in mice with chronic heart failure vs. sham-operat... OmicsDI

    ID: E-GEOD-55280

    Date Released: 04-03-2015

    Description: ailure vs. sham-operation were performed in C57BL/6 male mice. After development of chronic heart failure (CHF) 8 weeks after the operation RNA was extracted out of prefrontal cortex, hippocampus and left ventricular myocardium in both groups. RNA of 3 ischemic CHF mice versus 6 sham operated mice was pooled and further subjected to RNA sequencing. To fabricate singular pools each probe of the group equally contributed with the final amount of 2 µg RNA per pool with the result that we had 6 different pools to be further evaluated. The mRNA profile was generated by IGA Technology, Italy (http://www.igatechnology.com/) by deep sequencing, using Illumina HiSeq 2000 platform (HiSeq). CLC-Bio Genomics Workbench software (CLC Bio, Denmark) was used to calculate gene expression levels based on Mortazavi et al. (Nat Methods. 2008;5:621-628) approach....

  12. Gene expression changes in greenhouse Hebeloma cylindrosporum-Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living... BioProject

    ID: PRJNA275983

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: . Ectomycorrhizal root tips were harvested after 6 months and used for RNA extraction. Reads of 100 bp were generated and aligned to Hebeloma cylindrosporum transcripts (http://genome.jgi-psf.org/Hebcy2) using CLC Genomics Workbench 6. Overall design: mRNA profiles from Hebeloma cylindrospo...
  13. Gene expression changes in greenhouse Hebeloma cylindrosporum-Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living... ArrayExpress

    ID: E-GEOD-66156

    Description: . Ectomycorrhizal root tips were harvested after 6 months and used for RNA extraction. Reads of 100 bp were generated and aligned to Hebeloma cylindrosporum transcripts () using CLC Genomics Workbench 6. mRNA profiles from Hebeloma cylindrosporum ectomycorrhizal root tips and free-living m...

  14. 6484573 RGD

    Description: This strain was produced by injecting ZFNs targeting the sequence GTCCCTGGTGACGACtgtggtGGTGTTTGTGGCCTCCATG into SS/JrHsdMcwi rat embryos. The resultin...

    Creators: PhysGen Knockouts

    biologicalEntity.identifiers: SS-Clcn6em2Mcwi
  15. Gene expression changes in Tulasnella calospora- Serapias vomeracea mycorrhizal protocorms compared to Tulasnella calospora free-living mycelium ArrayExpress

    ID: E-GEOD-63869

    Description: ned to Tulasnella calospora transcripts () using CLC Genomics Workbench 6. mRNA profiles from Tulasnella calospora mycorrhizal protocorms and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Three biological replicates were sequenced for mycorrhizal and mycelium samples....

  16. Effect of Methyl jasmonate of the Poplar root transcriptome ArrayExpress

    ID: E-GEOD-56864

    Description: d and aligned to the Populus trichocarpa () using CLC Genomics Workbench 6. mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate as well as from control roots were generated by paired-end (2X100bp) Illumina HiSeq sequencing. Four samples were sequenced per lane, two biological replicates per treatment....

  17. Gene expression changes in Suillus luteus- Pinus sylvestris ectomycorrhizal roots compared to Suillus luteus free-living mycelium ArrayExpress

    ID: E-GEOD-63926

    Description: generated and aligned to Suillus luteus () using CLC Genomics Workbench 6. mRNA profiles from Suillus luteus ectomycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Two biological replicates were sequenced for mycorrhizal and mycelium samples....

  18. mRNA sequencing of two brain regions (prefrontal cortex and hippocampus) and left myocardial tissue in mice with chronic heart failure vs. sham-operat... ArrayExpress

    ID: E-GEOD-55280

    Description: ailure vs. sham-operation were performed in C57BL/6 male mice. After development of chronic heart failure (CHF) 8 weeks after the operation RNA was extracted out of prefrontal cortex, hippocampus and left ventricular myocardium in both groups. RNA of 3 ischemic CHF mice versus 6 sham operated mice was pooled and further subjected to RNA sequencing. To fabricate singular pools each probe of the group equally contributed with the final amount of 2 µg RNA per pool with the result that we had 6 different pools to be further evaluated. The mRNA profile was generated by IGA Technology, Italy () by deep sequencing, using Illumina HiSeq 2000 platform (HiSeq). CLC-Bio Genomics Workbench software (CLC Bio, Denmark) was used to calculate gene expression levels based on Mortazavi et al. (Nat Methods. 2008;5:621-628) approach....

  19. Gene expression changes in greenhouse Hebeloma cylindrosporum-Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living... OmicsDI

    ID: E-GEOD-66156

    Date Released: 08-19-2015

    Description: . Ectomycorrhizal root tips were harvested after 6 months and used for RNA extraction. Reads of 100 bp were generated and aligned to Hebeloma cylindrosporum transcripts (http://genome.jgi-psf.org/Hebcy2) using CLC Genomics Workbench 6. mRNA profiles from Hebeloma cylindrosporum ectomycorrhi...

  20. Carcinus maenas cardiac transcriptome assembly Dryad

    DateIssued: 06-29-2015

    Description: California, and British Columbia) Assembled with CLC Genomics Workbench. Further details in associated publications....


Displaying 20 of 58 results for "CLCN6"