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Displaying 20 of 22 results for "BCAS3"
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  1. BCAS3_DROME UniProt:Swiss-Prot

    ID: Q8SY41

    Description: Breast carcinoma-amplified sequence 3 homolog WD 1 WD 2...

  2. Large scale screening for known fusion genes in cancer cell lines BioProject

    ID: PRJNA132429

    Keywords: Other

    Access Type: download

    dataset.description: maximum-score. Two additional fusion genes, BCAS4-BCAS3 from the MCF-7 breast cancer cell line and CCDC6-RET from the TPC-1 thyroid cancer cell line were validated as true positive fusion transcripts from the remaining 57 cell lines. Overall design: A total of 67 cell lines from various cancer types were analysed for presence of known fusion genes...
  3. Large scale screening for known fusion genes in cancer cell lines ArrayExpress

    ID: E-GEOD-24737

    Description: maximum-score. Two additional fusion genes, BCAS4-BCAS3 from the MCF-7 breast cancer cell line and CCDC6-RET from the TPC-1 thyroid cancer cell line were validated as true positive fusion transcripts from the remaining 57 cell lines. A total of 67 cell lines from various cancer types were analysed for presence of known fusion genes...

  4. 5687996 RGD

    Description: ZFN mutant founders were backcrossed with SS/JrHsdMcwi to get heterozygous offsprings which were intercrossed and offsprings maintained as homozygous ...

    Creators: PhysGen Knockouts

    biologicalEntity.identifiers: SS-Bcas3em4Mcwi-/-
  5. 5687994 RGD

    Description: ZFN mutant founders were backcrossed with SS/JrHsdMcwi to get heterozygous offsprings which were intercrossed and offsprings maintained as homozygous ...

    Creators: PhysGen Knockouts

    biologicalEntity.identifiers: SS-Bcas3em4Mcwi+/+
  6. Genomic Interaction Profiles in Breast Cancer Reveal Altered Chromatin Architecture ArrayExpress

    ID: E-GEOD-49521

    Description: In this study, we used IGFBP3, a gene involved in breast cancer pathogenesis, as bait in a 4C-seq experiment comparing normal breast cells (HMEC) with two breast cancer cell lines (MCF7, an ER positive cell line, and MDA-MB-231, a triple negative cell line). The IGFBP3 long-range interaction profile was substantially altered in breast cancer. Many interactions seen in normal breast cells are lost and novel interaction...

  7. Genomic Interaction Profiles in Breast Cancer Reveal Altered Chromatin Architecture BioProject

    ID: PRJNA214104

    Keywords: Other

    Access Type: download

  8. Deep Sequence Analysis of the Relationship between Gene Expression, CpG Island Methylation, and Gene Copy Number in Breast Cancer Cells ArrayExpress

    ID: E-GEOD-27003

    Description: tion status simultaneously in eight commonly used breast cell lines to develop a model for how these genomic features are integrated in estrogen receptor positive (ER+) and negative breast cancer. Total mRNA sequence, gene copy number, and genomic C...

  9. Positioning of Necrotic Lobular Intraepithelial Neoplasias within the sequence of breast carcinoma progression ArrayExpress

    ID: E-GEOD-14803

    Description: Lobular intraepithelial neoplasia grade 3 (LIN) is a recently recognized variant of intraepithelial lobular neoplasia of the breast composed of either u...

  10. Deep Sequence Analysis of the Relationship between Gene Expression, CpG Island Methylation, and Gene Copy Number in Breast Cancer Cells BioProject

    ID: PRJNA137657

    Keywords: Other

    Access Type: download

  11. Transcription profiling by high throughput sequencing of ZNF217 chromatin occupancy in the breast cancer cell genome ArrayExpress

    ID: E-GEOD-58326

    Description: inc finger protein, is located at 20q13 and found amplified and overexpressed in greater than 20% of breast tumors. Current studies indicate ZNF217 drives tumorigenesis, yet the regulatory mechanisms of ZNF21...

  12. Precursor and mature microRNA expression in MCF7 cells in hypoxia ArrayExpress

    ID: E-GEOD-49999

    Description: ffects on microRNA biogenesis proteins. Methods: Breast cancer cell lines were exposed to hypoxia and manipulations of hypoxia inducible factor (HIF) and HIF hydroxylase activity. The effects of hypoxia on the mRNA and protein levels of enzymes involved in microRNA biogenesis (Dicer, Drosha, TARPB2, DCGR8, XPO5) was determined by RT PCR and immunoblotting. The effect of hypoxia on microRNAs was...

  13. Positioning of Necrotic Lobular Intraepithelial Neoplasias within the sequence of breast carcinoma progression BioProject

    ID: PRJNA111975

    Keywords: Variation

    Access Type: download

  14. Fibroblasts transcriptome altered by breast cell lines BioProject

    ID: PRJNA95589

    Keywords: Transcriptome or Gene expression

    Access Type: download

  15. Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with Eralpha BioProject

    ID: PRJNA251998

    Keywords: Transcriptome or Gene expression

    Access Type: download

  16. Large scale screening for known fusion genes in cancer cell lines OmicsDI

    ID: E-GEOD-24737

    Date Released: 05-02-2014

    Description: maximum-score. Two additional fusion genes, BCAS4-BCAS3 from the MCF-7 breast cancer cell line and CCDC6-RET from the TPC-1 thyroid cancer cell line were validated as true positive fusion transcripts from the remaining 57 cell lines. A total of 67 cell lines from various cancer types were analysed for presence of known fusion genes...

  17. Transcription profiling by array time series of human MCF7 breast cancer cells treated with estradiol ArrayExpress

    ID: E-GEOD-11352

    Description: n receptor alpha (ERalpha) binding sites in MCF-7 breast cancer cells. We identified 1,234 high confidence binding clusters of which 94% are projected to be bona fide ERalpha binding regions. Only 5% of the mapped estrogen receptor binding sites are located within 5 kb upstream of the ...

  18. PRJNA304991 BioProject

    Access Type: download

    dataset.description: atients with oestrogen receptor (ER)-positive (+) breast cancer. To better understand the mechanism of endocrine resistance, we developed preclinical endocrine-resistant (Endo-R) cell line models and characterized these models at mult...
  19. Timecourse of estradiol (10nM) exposure in MCF7 breast cancer cells. BioProject

    ID: PRJNA106571

    Keywords: Transcriptome or Gene expression

    Access Type: download

  20. Precursor and mature microRNA expression in MCF7 cells in hypoxia BioProject

    ID: PRJNA215772

    Keywords: Transcriptome or Gene expression

    Access Type: download

    dataset.description: ffects on microRNA biogenesis proteins. Methods: Breast cancer cell lines were exposed to hypoxia and manipulations of hypoxia inducible factor (HIF) and HIF hydroxylase activity. The effects of hypoxia on the mRNA and protein levels of enzymes involved in microRNA biogenesis (Dicer, Drosha, TARPB2, DCGR8, XPO5) was determined by RT PCR and immunoblotting. The effect of hypoxia on microRNAs was...

Displaying 20 of 22 results for "BCAS3"