BAZ1A | bioCADDIE Data Discovery Index
Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Displaying 16 of 16 results for "BAZ1A"
i
  1. Expression analysis of Baz1a-deficient spermatocytes and spermatids ArrayExpress

    ID: E-GEOD-41303

    Description: Acf1 was isolated almost 15 years ago from Drosophila embryo extracts as a subunit of several complexes that possess chromatin asse...

  2. Expression analysis of Baz1a-deficient spermatocytes and spermatids OmicsDI

    ID: E-GEOD-41303

    Date Released: 06-02-2014

    Description: Acf1 was isolated almost 15 years ago from Drosophila embryo extracts as a subunit of several complexes that possess chromatin asse...

  3. Expression analysis of Baz1a-deficient spermatocytes and spermatids BioProject

    ID: PRJNA176483

    Keywords: Transcriptome or Gene expression

    Access Type: download

  4. BAZ1A_XENLA UniProt:Swiss-Prot

    ID: Q8UVR5

    Description: Bromodomain adjacent to zinc finger domain protein

  5. PRJNA319519 BioProject

    Keywords: raw sequence reads

    Access Type: download

    dataset.description: BAZ1A mouse knockout RNAseq
  6. Active Promoters give rise to false positive 'Phantom Peaks' in ChIP-Seq experiments ArrayExpress

    ID: E-GEOD-67323

    Description: bodies directed against their signature subunits, ACF1 and RSF1, robust profiles were obtained indicating that both remodelers co-occupied a large set of active promoters. For further validation we repeated the mapping using chromatin of mutant embryos that do not express ACF1 or RSF1. Surprisingly, the ChIP-seq profiles were unchanged, suggesting that they were not due t...

  7. ACF1_Q3443.S2.Affy 2 ArrayExpress

    ID: E-GEOD-45067

    Description: EXPERIMENTAL FACTORS: Cell Line S2-DRSC; Antibody ACF1 Q3443 (target is ACF1)...

  8. Active Promoters give rise to false positive 'Phantom Peaks' in ChIP-Seq experiments BioProject

    ID: PRJNA279510

    Keywords: Epigenomics

    Access Type: download

    dataset.description: bodies directed against their signature subunits, ACF1 and RSF1, robust profiles were obtained indicating that both remodelers co-occupied a large set of active promoters. For further validation we repeated the mapping using chromatin of mutant embryos that do not express ACF1 or RSF1. Surprisingly, the ChIP-seq profiles were unchanged, suggesting that they were not due t...
  9. Renal Cell Neoplasms Contain Shared Tumor Type-Specific Copy Number Variations ArrayExpress

    ID: E-GEOD-34676

    Description: ding multiple gene families (chromophobe: amylase 1A, 1B, 1C; oncocytoma: general transcription factor 2H2, 2B, 2C, 2D). Gene deletions involved in histone modification and chromatin remodeling affected individual subtypes (clear cell: SFMBT, SETD2; papillary type 2: BAZ1A) as well as the collective RCC group (KDM4C). The genomic amplifications/deletions identified in each renal tumor type represent potential diagnostic and/or prognostic biomarkers. Tissue samples were obtained from the University of Pittsburgh Health Sciences Tissue Bank (HSTB) using an honest broker system and according to IRB approved protocol #970480. Samples were acquired as surgical specimens, flash-frozen in a 1.8 ml cryotube (NalgeNunc, Inc., Rochester, NY) followed by immediate storage at -80C. Each tumor sample (n=27) was classified into one of 5 renal cancer subtypes (chromophobe: n=5, clear cell: n=5, oncocytoma: n=5, papillary type 1: n=6, papillary type 2: n=6) by consensus evaluation of correlative hematoxylin and eosin stained slides performed independently by 3 anatomical pathologists. The three pathologists also confirmed the absence of pathological features in adjacent normal renal samples (n=9) and this normal reference grou...

  10. Renal Cell Neoplasms Contain Shared Tumor Type-Specific Copy Number Variations BioProject

    ID: PRJNA150315

    Keywords: Variation

    Access Type: download

    dataset.description: ding multiple gene families (chromophobe: amylase 1A, 1B, 1C; oncocytoma: general transcription factor 2H2, 2B, 2C, 2D). Gene deletions involved in histone modification and chromatin remodeling affected individual subtypes (clear cell: SFMBT, SETD2; papillary type 2: BAZ1A) as well as the collective RCC group (KDM4C). The genomic amplifications/deletions identified in each renal tumor type represent potential diagnostic and/or prognostic biomarkers. Overall design: Tissue samples were obtained from the University of Pittsburgh Health Sciences Tissue Bank (HSTB) using an honest broker system and according to IRB approved protocol #970480. Samples were acquired as surgical specimens, flash-frozen in a 1.8 ml cryotube (NalgeNunc, Inc., Rochester, NY) followed by immediate storage at -80C. Each tumor sample (n=27) was classified into one of 5 renal cancer subtypes (chromophobe: n=5, clear cell: n=5, oncocytoma: n=5, papillary type 1: n=6, papillary type 2: n=6) by consensus evaluation of correlative hematoxylin and eosin stained slides performed independently by 3 anatomical pathologists. The three pathologists also confirmed the absence of pathological features in adjacent normal renal samples (n=9) and this norma...
  11. Active Promoters give rise to false positive 'Phantom Peaks' in ChIP-Seq experiments OmicsDI

    ID: E-GEOD-67323

    Date Released: 08-19-2015

    Description: bodies directed against their signature subunits, ACF1 and RSF1, robust profiles were obtained indicating that both remodelers co-occupied a large set of active promoters. For further validation we repeated the mapping using chromatin of mutant embryos that do not express ACF1 or RSF1. Surprisingly, the ChIP-seq profiles were unchanged, suggesting that they were not due t...

  12. ACF1_Q3443.S2.Affy 2 OmicsDI

    ID: E-GEOD-45067

    Date Released: 05-03-2014

    Description: EXPERIMENTAL FACTORS: Cell Line S2-DRSC; Antibody ACF1 Q3443 (target is ACF1)...

  13. Renal Cell Neoplasms Contain Shared Tumor Type-Specific Copy Number Variations OmicsDI

    ID: E-GEOD-34676

    Date Released: 05-04-2014

    Description: ding multiple gene families (chromophobe: amylase 1A, 1B, 1C; oncocytoma: general transcription factor 2H2, 2B, 2C, 2D). Gene deletions involved in histone modification and chromatin remodeling affected individual subtypes (clear cell: SFMBT, SETD2; papillary type 2: BAZ1A) as well as the collective RCC group (KDM4C). The genomic amplifications/deletions identified in each renal tumor type represent potential diagnostic and/or prognostic biomarkers. Tissue samples were obtained from the University of Pittsburgh Health Sciences Tissue Bank (HSTB) using an honest broker system and according to IRB approved protocol #970480. Samples were acquired as surgical specimens, flash-frozen in a 1.8 ml cryotube (NalgeNunc, Inc., Rochester, NY) followed by immediate storage at -80C. Each tumor sample (n=27) was classified into one of 5 renal cancer subtypes (chromophobe: n=5, clear cell: n=5, oncocytoma: n=5, papillary type 1: n=6, papillary type 2: n=6) by consensus evaluation of correlative hematoxylin and eosin stained slides performed independently by 3 anatomical pathologists. The three pathologists also confirmed the absence of pathological features in adjacent normal renal samples (n=9) and this normal reference grou...

  14. ACF chromatin remodeling complex mediates stress-induced depressive-like behavior through nucleosome repositioning and transcriptional regulation. OmicsDI

    ID: E-GEOD-54263

    Date Released: 09-26-2015

    Description: 48 hours after the last defeat session, and then Acf1, SNF2H ChIP-seq or H3 MNase-seq were performed based on the control, susceptible, and resilient groups. Three sequencing replicates were performed on each group....

  15. ACF chromatin remodeling complex mediates stress-induced depressive-like behavior through nucleosome repositioning and transcriptional regulation ArrayExpress

    ID: E-GEOD-54263

    Description: 48 hours after the last defeat session, and then Acf1, SNF2H ChIP-seq or H3 MNase-seq were performed based on the control, susceptible, and resilient groups. Three sequencing replicates were performed on each group....

  16. ACF chromatin remodeling complex mediates stress-induced depressive-like behavior through nucleosome repositioning and transcriptional regulation. BioProject

    ID: PRJNA236060

    Keywords: Epigenomics

    Access Type: download

    dataset.description: 48 hours after the last defeat session, and then Acf1, SNF2H ChIP-seq or H3 MNase-seq were performed based on the control, susceptible, and resilient groups. Three sequencing replicates were performed on each group....

Displaying 16 of 16 results for "BAZ1A"