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  1. GitHub repository gitter-lab/pria_lifechem software archive CEDAR

    Description: Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library.

  2. genome-analysis-workflows CWL workflow definitions for executing MGI analysis pipelines CEDAR

    Description: CWL and docker based pipelines for analysis of high-throughput sequence data on local or cloud compute

  3. Cerebral Cortex cloud platform example code CEDAR

    Description: Example code that to demonstrate the capabilities of the Cerebral Cortex Kernel

  4. DEEPEST-Fusion CEDAR

    Description: This is a statistical fusion detection algorithm particularly engineered for screening big RNA sequencing databases

  5. Tools and workflow to produce VCF files from BAM files using Google Cloud Pipelines CEDAR

    Description: Although Google Cloud Genomics and Sentieon pipelines support robust tools to obtain high quality VCFs from BAM files, obtaining VCF files from these ...

  6. Processed ATAC-seq from dorsolateral-prefrontal cortex in adult brain CEDAR

    Description: Processed data ATAC-seq data from 341 samples from dorsolateral-prefrontal cortex samples of individuals with schizophrenia and control

  7. iTextMine CEDAR

    Description: iTextMine is an Integrated Text Mining System for Large Scale Knowledge Extraction from Literature. The system employs parallel processing for dockeri...

  8. OpenNeuro-processed CEDAR

    Description: OpenNeuro dataset processed with various neuroimaging tools and pipelines

  9. Regtools software CEDAR

    Description: Source code for the regtools application

  10. Protein Ontology (PRO) CEDAR

    Description: Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships be...

  11. GTEx exon-exon-junction-level expression summary for Snaptron CEDAR

    Description: GTEx exon-exon-junction-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip...

  12. The topography of alpha-band activity tracks the content of spatial working memory #394 Ndar Papers

    ID: 394

    Description: Working memory (WM) is a system for the online storage of information. An emerging view is that neuronal oscillations coordinate the cellular assembli...

    Types: Observational Study

  13. Epigenetics Marks as Peripheral Biomarkers of Autism #287 Ndar Papers

    ID: 287

    Description: We are studying a potential epigenetic component to the autism spectrum disorders (ASD) by interrogating DNA methylation (DNAm) using an established h...

    Types: Controlled Study

  14. No Evidence for Association of Autism with Rare Heterozygous Point Mutations in Contactin-Associated Protein-Like 2 (CNTNAP2), or in Other Contactin-A... Ndar Papers

    ID: 370

    Description: Contactins and Contactin-Associated Proteins, and Contactin-Associated Protein-Like 2 (CNTNAP2) in particular, have been widely cited as autism risk g...

    Types: Observational Study

  15. Genotypes of Swedish subjects used in "Most genetic risk for autism resides with common variation" study #346 Ndar Papers

    ID: 346

    Description: A key component of genetic architecture is the allelic spectrum influencing trait variability. For autism spectrum disorder (herein termed autism), th...

    Types: Observational Study

  16. Association between pupillary light reflex and sensory behaviors in children with autism spectrum disorders. #382 Ndar Papers

    ID: 382

    Description: Atypical pupillary light reflexes (PLR) has been observed in children with autism spectrum disorders (ASD), which suggests potential autonomic nervous...

    Types: Observational Study

  17. Derivation of Brain Structure Volumes from MRI Neuroimages hosted by NDAR using NITRC-CE #332 Ndar Papers

    ID: 332

    Description: A draft publication is in progress. GitHub repository with code for working with NDAR Data is available here: https://github.com/chaselgrove/ndar **...

    Types: Observational Study

  18. Autism spectrum disorder: interaction of air pollution with the MET receptor tyrosine kinase gene. #340 Ndar Papers

    ID: 340

    Description: Background: Independent studies report association of autism spectrum disorder with air pollution exposure and a functional promoter variant (rs18588...

    Types: Observational Study

  19. Analysis of the contribution of experimental bias, experimental noise, and inter-subject biological variability on the assessment of developmental tra... Ndar Papers

    ID: 396

    Description: Metrics derived from the diffusion tensor, such as fractional anisotropy (FA) and mean diffusivity (MD) have been used in many studies of postnatal br...

    Types: Observational Study

  20. The contribution of de novo coding mutations to autism spectrum disorder #352 Ndar Papers

    ID: 352

    Description: Whole exome sequencing has proven to be a powerful tool for understanding the genetic architecture of human disease. Here we apply it to more than 2,5...

    Types: Observational Study


Displaying 20 of 119 results for " "