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  1. GitHub repository gitter-lab/pria_lifechem software archive CEDAR

    Description: Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library.

  2. genome-analysis-workflows CWL workflow definitions for executing MGI analysis pipelines CEDAR

    Description: CWL and docker based pipelines for analysis of high-throughput sequence data on local or cloud compute

  3. Cerebral Cortex cloud platform example code CEDAR

    Description: Example code that to demonstrate the capabilities of the Cerebral Cortex Kernel

  4. DEEPEST-Fusion CEDAR

    Description: This is a statistical fusion detection algorithm particularly engineered for screening big RNA sequencing databases

  5. Tools and workflow to produce VCF files from BAM files using Google Cloud Pipelines CEDAR

    Description: Although Google Cloud Genomics and Sentieon pipelines support robust tools to obtain high quality VCFs from BAM files, obtaining VCF files from these ...

  6. Processed ATAC-seq from dorsolateral-prefrontal cortex in adult brain CEDAR

    Description: Processed data ATAC-seq data from 341 samples from dorsolateral-prefrontal cortex samples of individuals with schizophrenia and control

  7. iTextMine CEDAR

    Description: iTextMine is an Integrated Text Mining System for Large Scale Knowledge Extraction from Literature. The system employs parallel processing for dockeri...

  8. OpenNeuro-processed CEDAR

    Description: OpenNeuro dataset processed with various neuroimaging tools and pipelines

  9. Regtools software CEDAR

    Description: Source code for the regtools application

  10. Protein Ontology (PRO) CEDAR

    Description: Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships be...

  11. GTEx exon-exon-junction-level expression summary for Snaptron CEDAR

    Description: GTEx exon-exon-junction-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip...

  12. Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio) OmicsDI

    ID: E-GEOD-60202

    Date Released: 08-19-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  13. Dazl is required for TET-mediated reprogramming to a naïve pluripotent state (I) OmicsDI

    ID: E-GEOD-69055

    Date Released: 08-19-2015

    Description: Embryonic stem cell (ESC) cultures display a heterogeneous gene expression profile, ranging from a pristine naïve pluripotent state to a primed epibl...

  14. Gata6 potently initiates reprogramming of pluripotent and differentiated cells to extraembryonic endoderm stem cells [time-course microarray] OmicsDI

    ID: E-GEOD-69321

    Date Released: 08-19-2015

    Description: Transcription factor-mediated reprogramming is a powerful method to study cell fate changes. In this work, we demonstrate that the transcription facto...

  15. E. histolytica and E. invadens OmicsDI

    ID: E-GEOD-67232

    Date Released: 08-19-2015

    Description: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

  16. Expression data from primary human mammary fibroblasts purified from disease-free women of low and high mammographic density OmicsDI

    ID: E-GEOD-38506

    Date Released: 08-18-2015

    Description: Although high mammographic density (MD) is considered one of the strongest risk factors for invasive breast cancer, the genes involved in modulating t...

  17. Gene expression profile of hemocytes from Manila clam (Venerupis philippinarum) after a Perkinsus olseni challenge using an immune-enriched oligo-micr... OmicsDI

    ID: E-GEOD-59399

    Date Released: 08-19-2015

    Description: Parasites of the genus Perkinsus spp. cause high mortalities and economic losses to the most noticeable bivalves produced in the worldwide aquaculture...

  18. A DNA Hypomethylation Signature Predicts Novel Anti-Tumor Activity of LSD1 Inhibitors in SCLC (ChIP-Seq) OmicsDI

    ID: E-GEOD-66297

    Date Released: 08-19-2015

    Description: Epigenetic dysregulation has emerged as an important mechanism in cancer. Alterations in epigenetic machinery have become a major focus for new targe...

  19. Tbx3 controls Dppa3 levels to regulate exit from pluripotency towards mesodermal lineage OmicsDI

    ID: E-GEOD-60066

    Date Released: 08-19-2015

    Description: Tbx3, a member of the T-box family, plays important roles in development, stem cells, nuclear reprogramming and cancer. Loss of Tbx3 induces different...

  20. Aberrant ERK signaling causes resistance to EGFR kinase inhibitors OmicsDI

    ID: E-GEOD-37699

    Date Released: 08-18-2015

    Description: The clinical efficacy of EGFR kinase inhibitors is limited by the development of drug resistance. The irreversible EGFR kinase inhibitor WZ4002 is eff...


Displaying 20 of 78,255 results for " "