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  1. Head and Neck Musculoskeletal Biomechanics SimTK

    ID: neck_mechanics

    Description: This project contains models, images and data for analysis of the neck musculoskeletal system. This includes skeletal geometry, muscle anatomy and jo...

  2. How Tendon Compliance Affects the Metabolic Cost of Running SimTK

    ID: metabolics_run

    Description: We investigated the effect of tendon compliance on the metabolic cost of running using a full-body musculoskeletal model with a detailed model of musc...

  3. Torso + Lower Extremity Model SimTK

    ID: torso_legs

    Description: This project contains an OpenSIM model file that includes a torso segment in addition to the lower extremity. The model contains 23 degrees of freedom...

  4. iAMOEBA, an Inexpensive AMOEBA Polarizable Water Model SimTK

    ID: iamoeba

    Description: iAMOEBA is an inexpensive and highly accurate polarizable water model. It is based on the AMOEBA model (Ren and Ponder, J. Phys. Chem. B, 2003). We ...

  5. OpenSim Musculoskeletal Model of a Sheep Hind Limb SimTK

    ID: sheep_hind_limb

    Description: The purpose of this study was to develop a musculoskeletal model of an adult sheep hind limb and investigate the effects of treadmill walking speed on...

  6. A Python implementation of the multistate Bennett acceptance ratio (MBAR) SimTK

    ID: pymbar

    Description: pymbar has migrated to GitHub: https://github.com/choderalab/pymbar

  7. Sam's Simulations SimTK

    ID: samsim

    Description: This project is intended to serve as a repository for software developed for physics-based simulation of human motion, as part of the work in the Neur...

  8. A trajectory of ribosomal translocation w Internal Coordinate Flexible Fitting SimTK

    ID: ribosome-icf

    Description: This contains the manuscript, fitted structures, trajectory, and movies for the flexible fitting of the ribosome to Fischer et al.'s density maps.

  9. Weighted histogram analysis method with Bayesian bootstrapping SimTK

    ID: wham_bb_twod

    Description: The free energy (or the potential of mean force) along a set of reaction coordinates is a central quantity in computational chemistry. Umbrella sampl...

  10. ME/BIOE 485 (Modeling and Simulation of Human Movement) SimTK

    ID: me485

    Description: This project is a central repository for reading materials, assignments, and student-written computer code related to ME/BIOE 485 (Modeling and Simula...

  11. Analysis of arm swing during human walking SimTK

    ID: arm_swing

    Description: This project provides a simplified version of the UpperLowerBodySimple model from the ULB-project, which was adjusted with the purpose to decrease the...

  12. Comparison of Hexahedral and Tetrahedral Elements in FE modeling of Foot SimTK

    ID: meshcomparison

    Description: This project compares the performance of hexahedral and tetrahedral elements in finite element modeling of the foot and footwear

  13. Molecular Dynamics Language (MDL) SimTK

    ID: mdl

    Description: The Molecular Dynamics Language (MDL) is intended to allow users to represent molecular dynamics (MD) simulations at a high level. This includes the ...

  14. MSMBuilder SimTK

    ID: msmbuilder

    Description: MSMBuilder is an open source software package for automating the construction and analysis of Markov state models (MSMs). It is primarily written in ...

  15. Single Molecule Dwell-time Distributions SimTK

    ID: dwell

    Description: Dwell-time distributions, waiting-time distributions, or distributions of pause durations are widely reported in single molecule biophysical experimen...

  16. ADPt-Gromacs - Coupling homologous replicas by adaptive position restraints SimTK

    ID: adpt-gromacs

    Description: We develop an implementation of adaptive position restraints for the GROMACS MD simulation software. The goal is to improve refinement of protein str...

  17. Upper Extremity Kinematic Model SimTK

    ID: up-ext-model

    Description: The project holds all the files necessary for a SIMM-based kinematic musculoskeletal model of the human upper-extremity which can also be easily impor...

  18. Connecting features of drugs to molecular, cellular, and organismal phenotypes SimTK

    ID: ghf-phd

    Description: This project contains datasets that I generated for my PhD thesis titled "Connecting chemical features of drugs to molecular, cellular, and organismal...

  19. Hydroxyproline Parameters SimTK

    ID: hydroxyproline

    Description: hydroxyproline parameters for Amber

  20. Ribosomal translocation with EF-G SimTK

    ID: efgtranslocat

    Description: This project aims at providing new insight about RNA translation into protein, focusing on the translocation step induced by Elongation Factor G (EF-G...


Displaying 20 of 332 results for " "