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  1. GitHub repository gitter-lab/pria_lifechem software archive CEDAR

    Description: Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library.

  2. genome-analysis-workflows CWL workflow definitions for executing MGI analysis pipelines CEDAR

    Description: CWL and docker based pipelines for analysis of high-throughput sequence data on local or cloud compute

  3. Cerebral Cortex cloud platform example code CEDAR

    Description: Example code that to demonstrate the capabilities of the Cerebral Cortex Kernel

  4. DEEPEST-Fusion CEDAR

    Description: This is a statistical fusion detection algorithm particularly engineered for screening big RNA sequencing databases

  5. Tools and workflow to produce VCF files from BAM files using Google Cloud Pipelines CEDAR

    Description: Although Google Cloud Genomics and Sentieon pipelines support robust tools to obtain high quality VCFs from BAM files, obtaining VCF files from these ...

  6. Processed ATAC-seq from dorsolateral-prefrontal cortex in adult brain CEDAR

    Description: Processed data ATAC-seq data from 341 samples from dorsolateral-prefrontal cortex samples of individuals with schizophrenia and control

  7. iTextMine CEDAR

    Description: iTextMine is an Integrated Text Mining System for Large Scale Knowledge Extraction from Literature. The system employs parallel processing for dockeri...

  8. OpenNeuro-processed CEDAR

    Description: OpenNeuro dataset processed with various neuroimaging tools and pipelines

  9. Regtools software CEDAR

    Description: Source code for the regtools application

  10. Protein Ontology (PRO) CEDAR

    Description: Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships be...

  11. GTEx exon-exon-junction-level expression summary for Snaptron CEDAR

    Description: GTEx exon-exon-junction-level expression summary from the Snaptron collection. Format is a tab-separated text file compressed and indexed using BGZip...

  12. Data from: Moderation is best: effects of grazing intensity on plant-flower visitor networks in Mediterranean communities Dryad

    DateIssued: 08-04-2016

    Description: The structure of pollination networks is an important indicator of ecosystem stability and functioning. Livestock grazing is a frequent land use pract...

  13. Data from: Socially selected ornaments and fitness: signals of fighting ability in paper wasps are positively associated with survival, reproductive s... Dryad

    DateIssued: 11-21-2015

    Description: Many animals have ornaments that mediate choice and competition in social and sexual contexts. Individuals with elaborate sexual ornaments typically h...

  14. Data from: Species turnover (β diversity) in ectomycorrhizal fungi linked to NH4+ uptake capacity Dryad

    DateIssued: 02-29-2016

    Description: Ectomycorrhizal (EcM) fungal communities may be shaped by both deterministic and stochastic processes, potentially influencing ecosystem development a...

  15. Data from: Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 g... Dryad

    DateIssued: 12-28-2015

    Description: Two common approaches for estimating phylogenies in species-rich groups are to: (i) sample many loci for few species (e.g. phylogenomic approach), or ...

  16. Data from: Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens Dryad

    DateIssued: 07-27-2016

    Description: The New Zealand acanthisittid wrens are the sister-taxon to all other “perching birds” (Passeriformes) and – including recently extinct species ...

  17. Data from: Vervet monkeys use paths consistent with context-specific spatial movement heuristics Dryad

    DateIssued: 10-28-2015

    Description: Animal foraging routes are analogous to the computationally demanding “traveling salesman problem” (TSP), where individuals must find the shortest...

  18. Data from: The selective myosin II inhibitor blebbistatin reversibly eliminates gastrovascular flow and stolon tip pulsations in the colonial hydroid ... Dryad

    DateIssued: 12-22-2015

    Description: Blebbistatin reversibly disrupted both stolon tip pulsations and gastrovascular flow in the colonial hydroid Podocoryna carnea. Epithelial longitudina...

  19. Data from: Continuous theta burst stimulation over the left dorsolateral prefrontal cortex decreases medium load working memory performance in healthy... Dryad

    DateIssued: 09-23-2015

    Description: The dorsolateral prefrontal cortex (DLPFC) plays a key role in working memory. Evidence indicates that transcranial magnetic stimulation (TMS) over th...

  20. Data from: Perceptual expertise in forensic facial image comparison Dryad

    DateIssued: 09-24-2015

    Description: Forensic facial identification examiners are required to match the identity of faces in images that vary substantially, owing to changes in viewing co...


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