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Dataset Title Keywords Date Released Description
A DNA Hypomethylation Signature Predicts Novel Anti-Tumor Activity of LSD1 Inhibitors in SCLC (ChIP-Seq) ChIP-seq 08-19-2015 Epigenetic dysregulation has emerged as an important mechanism in cancer. Alterations in epigenetic...
Tbx3 controls Dppa3 levels to regulate exit from pluripotency towards mesodermal lineage RNA-seq of coding RNA
ChIP-seq
08-19-2015 Tbx3, a member of the T-box family, plays important roles in development, stem cells, nuclear reprog...
MeCP2 binds to mCH as neurons mature, influencing transcription and onset of Rett syndrome [Mnase-Seq] ChIP-seq 08-19-2015 The postnatal neurodevelopmental disorder Rett syndrome (RTT) is caused by mutations in the gene enc...
Epigenomic Evolution of Diffuse Large B-cell Relapse methylation profiling by high throughput sequencing 08-19-2015 Here we characterize an association between disease progression and DNA methylation in Diffuse Large...
Fgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of Trophoblast Stem Cells RNA-seq of coding RNA
ChIP-seq
08-18-2015 Derivation and maintenance of TS cells depends on the presence of Fgf signalling. Numerous gene knoc...
A simple method for generating high-resolution maps of genome wide protein binding ChIP-seq 06-21-2015 Chromatin immunoprecipitation (ChIP) and its derivatives are the main techniques used to determine t...
Comprehensive genomic analysis of relapse neuroblastoma [methylation] methylation profiling by array 06-27-2015 Relapse neuroblastoma were characterized by sequencing, gene expression, arrayCGH and genome-wide me...
TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer RNA-seq of coding RNA
methylation profiling by high throughput sequencing
12-12-2015 5-hydroxymethylcytosine (5-mC) and gene expression profiling of T84 cell differentiation; 5-hmC prof...
Childhood Atopic Asthma methylation profiling by array
transcription profiling by array
12-03-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue methylation profiling by array 12-08-2015 Genome wide DNA methylation profiling of clear cell renal cell carcinoma (ccRCC) tissue versus match...
A MYC-driven change in mitochondrial dynamics limits stem cell properties of mammary epithelial cells (ChIP-seq) ChIP-seq 12-08-2015 In several developmental lineages, an increase in expression of the MYC proto-oncogene drives the tr...
Trans-effects of chromosome aneuploidies on DNA methylation patterns: DNA methylation analysis of Down syndrome in human brain tissues and cells methylation profiling by array 12-08-2015 Background: Trisomy 21 causes Down syndrome (DS), but the mechanisms by which the extra chromosome l...
Phosphorylation of an HP1-like protein regulates RNA-bridged heterochromatin body assembly for DNA elimination other
ChIP-seq
12-11-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Genome-wide DNA-binding profile of the Vibrio cholerae histone-like nucleoid structuring protein (H-NS) ChIP-seq 08-19-2015 The cholera disease bacterium V. cholerae, can adopt planktonic or biofilm lifestyles depending on t...
Tet1 is a tumor suppressor of hematopoietic malignancy methylation profiling by high throughput sequencing 08-19-2015 Epigenetic pathways that regulate DNA methylation and chromatin modifications are frequently found t...
Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. methylation profiling by high throughput sequencing 08-19-2015 We performed WGBS analyses on 6 human fetal samples at 53-137 days of development, 4 female and 2 ma...
Symmetrical dose-dependent DNA methylation profiles in children with deletion or duplication of chromosome 7q11.23 methylation profiling by array 08-19-2015 Genome wide DNA methylation in blood derived DNA from individuals with deletion or duplication of 7q...
Oct4 binding and Histone modification profiling during OSKM-mediated 2nd reprogramming ChIP-seq 01-03-2016 Forced expression of four transcription factors Oct4,Sox2, Klf4 and Myc (OSKM) induces somatic cell ...
Cryptochromes interact directly with PIFs to control plant growth in limiting blue light ChIP-seq 01-01-2016 Sun-loving plants have the ability to detect and avoid shading through sensing of both blue and red ...
Models of Human Core Transcriptional Regulatory Circuitries ChIP-seq 12-27-2015 A small set of core transcription factors (TFs) dominates control of the gene expression program in ...