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Dataset Title Keywords Date Released Description
E. histolytica and E. invadens RNA-seq of non coding RNA 08-19-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Tbx3 controls Dppa3 levels to regulate exit from pluripotency towards mesodermal lineage RNA-seq of coding RNA
ChIP-seq
08-19-2015 Tbx3, a member of the T-box family, plays important roles in development, stem cells, nuclear reprog...
Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage [RNA-seq] RNA-seq of coding RNA 08-19-2015 MyoD and NeuroD2 are master regulators of myogenesis and neurogenesis and bind to a "shared&quo...
Small RNAs during E. histolytica stress response RNA-seq of non coding RNA 08-19-2015 We analyzed ~27nt small RNAs from Entamoeba histolytica trophozoites in basal conditions and after h...
Integrative ‘omic analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from SIRS RNA-seq of coding RNA 08-19-2015 Rationale: Sepsis is a leading cause of morbidity and mortality; early diagnosis and prediction of p...
Lung adenocarcinoma metastasis is suppressed by the alveolar lineage transcription factors GATA6 and HOPX. RNA-seq of coding RNA 08-18-2015 Molecular programs that mediate normal cell differentiation are required for oncogenesis and tumor c...
Transcription profiling by 3'-end sequencing of whole blood from pancreatic ductal adenocarcinoma (PDAC) patients and healthy controls for PDAC diagnosis RNA-seq of coding RNA 08-14-2015 We sequenced the transcriptomes using massive analysis of cDNA ends (MACE) of whole blood samples fr...
LEF-1 and TCF-1 orchestrate T follicular helper (Tfh) cell differentiation by regulating Tfh differentiation circuits upstream of Bcl6 RNA-seq of coding RNA 08-19-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Fgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of Trophoblast Stem Cells RNA-seq of coding RNA
ChIP-seq
08-18-2015 Derivation and maintenance of TS cells depends on the presence of Fgf signalling. Numerous gene knoc...
High-throughput sequencing of mouse liver transcriptome in Clock mutant animals RNA-seq of coding RNA 08-19-2015 Circadian profile of polyA RNA by RNA-Seq, collected from ClockΔ19 mouse liver at CT22, CT28, CT34,...
RNA-Seq profiling of single bovine oocyte transcript abundance and its modulation by cytoplasmic polyadenylation RNA-seq of coding RNA 08-19-2015 Polyadenylated RNA from individual germinal vesicle and metaphase II ooyctes was amplified and proce...
Molecular anatomy of palate development RNA-seq of coding RNA 08-19-2015 Background: The FACEBASE consortium was established in part to create a central resource for craniof...
Transciptional response to acute thermal stress in Chinook salmon RNA-seq of coding RNA 08-19-2015 Thermal stress is a serious and growing challenge facing Chinook salmon (Oncorhynchus tshawytscha) l...
Interactions of melanoma cells with distal keratinocytes trigger metastasis via Notch signaling inhibition of MITF RNA-seq of non coding RNA 08-19-2015 The most critical stage in initiation of melanoma metastasis is the radial to vertical growth transi...
Innate lymphoid cell development requires TOX-dependent generation of a common ILC progenitor RNA-seq of coding RNA 08-05-2015 Subtypes of innate lymphoid cells (ILC), defined by effector function and transcription factor expr...
Varicella-Zoster Virus (VZV) quiescent and productive infection of neurons derived from human embryonic stem cells RNA-seq of coding RNA 06-22-2015 quiescent and productive infection of varicella zoster virus in human embryonic stem stem cell-deriv...
The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis (RNA-Seq) RNA-seq of coding RNA 06-27-2015 SOX9 is a transcriptional activator required for chondrogenesis, and SOX5 and SOX6 are closely relat...
Transcriptomic gene profiling of porcine muscle tissue depending on histological properties RNA-seq of coding RNA 12-12-2015 Purpose: Next-generation sequencing (NGS) was used to select genes potentially associated with fiber...
TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer RNA-seq of coding RNA
methylation profiling by high throughput sequencing
12-12-2015 5-hydroxymethylcytosine (5-mC) and gene expression profiling of T84 cell differentiation; 5-hmC prof...
Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-seq of coding RNA 12-12-2015 RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and...