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Dataset Title Keywords Date Released Description
Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development RNA-seq of coding RNA
ChIP-seq
methylation profiling by high throughput sequencing
12-01-2015 Early mouse development is accompanied by dynamic changes in chromatin modifications, including G9a-...
Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination (RNA-Seq of differentiated NSC after lnc-OPC knockdown) RNA-seq of coding RNA 12-01-2015 To quantitative analysis of transcriptome changes caused by lnc-OPC knockdown during OPC differentia...
SOX15 governs a transcriptional program in human esophageal stratified epithelium and in a subset of esophageal adenocarcinomas RNA-seq of coding RNA
ChIP-seq
12-01-2015 We identified spatially restricted transcription factors and found SOX15 expression confined to stra...
Optimized siRNAs with a minimal off-target effect facilitate the screening of essential genes in cancer cells RNA-seq of coding RNA 08-19-2015 siRNAs with dN are a promising and easy approach to characterize essential genes by minimizing the o...
RNA-seq of coding RNA from chemosensory organs from two strains of Sesamia nonagrioides RNA-seq of coding RNA 12-01-2015 The aim of the experiment is to identify transcrits differentially expressed between two strains of ...
NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program RNA-seq of coding RNA
ChIP-seq
12-02-2015 Cell fate specification relies on the action of critical transcription factors that become available...
Transcriptome profiling in knock-in mouse models of Huntington's disease [Cerebellum_miRNA] RNA-seq of non coding RNA 12-02-2015 Huntington's disease (HD) is an autosomal dominant neurodegenerative disorder that is characterized ...
The evolution of genic piRNA cluster loci expression patterns RNA-seq of coding RNA
RNA-seq of non coding RNA
12-03-2015 This study examines the conservation of Piwi-interacting RNA (piRNA) clusters that come from protein...
CD13 and ROR2 permit isolation of highly enriched cardiac mesoderm from differentiating human embryonic stem cells RNA-seq of coding RNA 12-01-2015 The resultant heat map demonstrates the maturation of CD13+/ROR2+ cells as they proceed through card...
Mitochondrial contagion induced by Parkin deficiency in Drosophila hearts and its containment by suppressing mitofusin; germline Parkin knockout mouse hearts. RNA-seq of coding RNA 12-03-2015 Dysfunctional Parkin-mediated mitophagic culling of senescent or damaged mitochondria is a major pat...
Oncogenic deregulation of EZH2 as an opportunity for targeted therapy in lung cancer [RNA-Seq] RNA-seq of coding RNA 12-03-2015 As a master regulator of chromatin structure and function, the EZH2 lysine methyltransferase orchest...
Transcriptome profiling in knock-in mouse models of Huntington's disease [Hippocampus_mRNA] RNA-seq of coding RNA 12-02-2015 Huntington's disease (HD) is an autosomal dominant neurodegenerative disorder that is characterized ...
miRNA-99 family diverges physiological cardiac hypertrophy to pathological cardiac hypertrophy RNA-seq of non coding RNA 12-03-2015 Purpose: The physiological cardiac hypertrophy is an adaptive condition that does not associate with...
RNAseq profiling of a lpp0148 mutant compared to its isogenic parent Legionella pneumophila strain Paris RNA-seq of coding RNA 12-07-2015 Comparaison of the transcriptional profile of mutant of the lpp0148 gene and the parent strain Legio...
Transcriptome sequencing of Nile tilapia hepatopancreas in different salinity RNA-seq of coding RNA 12-03-2015 In this study, RNA-Seq was used to reveal the differences of molecular pathways in hepatopancreas of...
Genome-wide mapping of Zea maize TSSs RNA-seq of coding RNA 12-02-2015 Genome-wide mapping of the TSS in root and shoot from two maize lines B73 and Mo17 Genome-wide locat...
JMJD1C is required for the survival of acute myeloid leukemia by functioning as a co-activator for key transcription factors RNA-seq of coding RNA
ChIP-seq
12-02-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Dual RNA-sequencing of nontypeable Haemophilus influenzae and host cell transcriptomes reveals new aspects of host-pathogen interface RNA-seq of coding RNA 12-02-2015 Characterization of host-pathogen interactions is critical for the development of next-generation th...
RNA-seq analysis of control and Myc-induced U2OS cells RNA-seq of coding RNA 12-02-2015 We used RNA-seq to examine the effect of Myc activation on U2OS cells transcriptome. We also examine...
PANCR, the PITX2 adjacent noncoding RNA, is specifically expressed in human left atria and regulates PITX2c expression RNA-seq of coding RNA
RNA-seq of non coding RNA
08-19-2015 Purpose: Common genetic variation at chromosome 4q25 lead to the strongest locus associated with atr...