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Dataset Title Keywords Date Released Description
RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from mouse RNA-seq of coding RNA 07-07-2015 This experiment contains the Mus musculus subset of data from the experiment E-GEOD-41338 (http://ww...
Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity [RNA-Seq] RNA-seq of coding RNA 06-19-2015 T cell development comprises a stepwise process of commitment from a multipotent precursor. To defin...
Altered epigenetic programming links intestinal inflammation to colon cancer (RNA-seq) RNA-seq of coding RNA 06-20-2015 This study uses whole-transcriptome sequencing to characterize the transcriptomes of the AOM/DSS mou...
Specificity, propagation and memory of pericentric heterochromatin in mouse fibroblasts: H3S10p RNA-seq of coding RNA
ChIP-seq
06-20-2015 ChIP-seq of H3S10p in synchronized and asynchronous ESCs and RNA-seq of ESCs after inhibition of AUR...
Pilot KOMP knockout mouse strains RNA-seq of coding RNA 06-16-2015 This is a test case of D. West's RNA-seq from KOMP2 mutant strains
The cohesin loader Scc2 regulates key regulatory genes critical for development RNA-seq of coding RNA 06-21-2015 The evolutionarily conserved cohesin complex is crucial for holding sister chromatids together from ...
mRNA profiling reveals determinants of trastuzumab efficiency in HER2-positive breast cancer RNA-seq of coding RNA 04-27-2015 The intention was to detect genes that are determining trastuzumab efficiency in HER2-positive breas...
Role of LDB1 in the transition from chromatin looping to transcription activation RNA-seq of coding RNA 04-30-2015 Many questions remain about how close association of genes and distant enhancers occurs and how this...
Transcription and Imprinting Dynamics in Developing Postnatal Male Germline Stem Cells RNA-seq of coding RNA
ChIP-seq
methylation profiling by high throughput sequencing
12-01-2015 Paternal imprinting initiates in primordial germ cells (PGCs), and is considered largely completed a...
MicroRNA profiling of neurons generated using induced pluripotent stem cells derived from patients with schizophrenia and 22q11.2 deletion RNA-seq of non coding RNA 08-19-2015 We are using induced pluripotent stem cell (iPSC) technology to study neuropsychiatric disorders ass...
Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination [RNA] other
RNA-seq of coding RNA
12-01-2015 Upon recruitment to active enhancers and promoters, RNA polymerase II (Pol_II) generates short non-c...
Oviduct-Embryo Interactions in Cattle: Two-Way Traffic or a One-Way Street? [RNA-Seq] RNA-seq of coding RNA 12-02-2015 The objective of this study was to examine the effect of the presence of a single or multiple embryo...
RNA sequencing of Control, ΔCop1β, ΔCop1β and ΔCop1β ΔETV1/4/5β islets RNA-seq of coding RNA 12-01-2015 Identify genes which are differentially expressed in ΔCop1β compared to control islets and are als...
Genes Targeted by the Hedgehog-Signaling Pathway can be Regulated by Estrogen Related Receptor β RNA-seq of coding RNA 12-01-2015 We report Hedgehog signaling responsive genes with or without Esrrb in NI3T3 cells. Using Hh-respons...
On the relationship of protein and mRNA dynamics in vertebrate embryonic development RNA-seq of coding RNA 12-01-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
HCT116 cells treated with the p97 inhibitior CB-5083 RNA-seq of coding RNA 12-01-2015 The goal of this study was to analyze differential gene expression 8 hr after treatment of CB-5083, ...
Ets-domain transcription factor Ets21c and nuclear receptor Ftz-F1 are novel effectors of JNK promoting tumor malignancy RNA-seq of coding RNA 12-01-2015 Cancer represents a complex family of diseases, characterized by the uncontrolled malignant growth o...
Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination [additional RNA] other
RNA-seq of coding RNA
12-01-2015 Upon recruitment to active enhancers and promoters, RNA polymerase II (Pol_II) generates short non-c...
An aspartyl protease defines a novel pathway for export of Toxoplasma proteins into the host cell RNA-seq of coding RNA 11-30-2015 Toxoplasma gondii is an obligate intracellular Apicomplexan parasite capable of invading and survivi...
Trim33 binds and silences a class of young endogenous retroviruses in the mouse testis RNA-seq of coding RNA
ChIP-seq
12-01-2015 Transposable elements (TEs) have been active in the mammalian genome for hundreds of millions of yea...