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Dataset Title Keywords Date Released Description
Transcription profiling by high throughput sequencing of rice leaf sheaths and roots from plants grown under N-deficient or N-sufficient conditions for 12 h RNA-seq of coding RNA 01-05-2016 Nitrogen (N), a critical macronutrient for plant growth and development, is a major limiting factor ...
Distinctive responses of Mycobacterium smegmatis to exposure of low and high levels of hydrogen peroxide RNA-seq of coding RNA 06-22-2015 Log phase cultures (OD600 of 0.8 - 1.0) of M. smegmatis mc2155 were diluted 1:100 into 7H9 media and...
Regional differences in left ventricular shear stress contribute to heterogenity of the endocardial transcriptome RNA-seq of coding RNA 06-24-2015 The role of shear stress, the frictional force of blood flow, on the endothelium has been well docum...
Mapping the Regulatory Network for Salmonella Typhimurium Invasion RNA-seq of coding RNA 07-21-2015 Using RNAseq, the goal of the study is to investigate transcription factor regulation of virulence g...
Common frog (Rana temporaria) transcriptomes following Exposure to Ranavirus and Batrachochytrium dendrobatidis RNA-seq of coding RNA 07-10-2015 This experiment examined the transcriptional response of juvenile amphibian hosts (common frog, Rana...
Transcriptional profiling of nascent and mature pancreatic beta cells RNA-seq of coding RNA 07-10-2015 This experiment used RNA-Seq technology to examine transcription profile in FACS-sorted MIP-EGFP+ mo...
Transcriptomic characterization of Hepatocellular Carcinoma with CTNNB1 mutation RNA-seq of coding RNA 08-04-2015 We report transcritomic characterization of changes in CTNNB1 mutation positive HCCs in comparison t...
Interplay of host microbiota, genetic perturbations, and inflammation promote local development of intestinal neoplasms in mice RNA-seq of coding RNA 08-04-2015 The preferential localization of some neoplasms, such as serrated polyps, in specific areas of the i...
Transcription profiling of MCF-7 cells overexpressing phosphodiesterase type 5 (PDE5) RNA-seq of coding RNA 08-04-2015 Purpose: By catalyzing hydrolysis of cyclic guanosine monophosphate, phosphodiesterase (PDE) 5 is a ...
Genome-wide characterization of gene regulatory mechanisms in Shh pathway underlying the pattern formation of early mouse brain RNA-seq of coding RNA
ChIP-seq
07-29-2015 Shh and its receptor Ptch1 define two adjacent mutually exclusive domains: Shh+Ptch1- and Shh-Ptch1+...
5Aza and TSA treatment of MCF7 cells (RNA-seq) RNA-seq of coding RNA 07-31-2015 The goal of this study is to identify the gene expression changes caused by exposure of to the DNMT ...
The oncofusion protein FUS-ERG targets key hematopoietic regulators and modulates the all-trans retinoic acid signaling pathway in t(16;21) acute myeloid leukemia RNA-seq of coding RNA
ChIP-seq
06-27-2015 Fusion proteins involving the ETS factor ERG have been associated with multiple cancers such as Ewin...
The transcriptome of TRPV1-positive sensory neurons revealed by subgroup-elimination transcriptomics RNA-seq of coding RNA 07-02-2015 We developed an approach to rapidly eliminate the subgroup of sensory neurons expressing the heat-ga...
Small molecule inhibition of ERK dimerization prevents tumorigenesis by Ras-ERK pathway oncogenes RNA-seq of coding RNA 07-03-2015 About 50% of human malignancies exhibit unregulated signalling through the Ras-ERK1/2 (ERK) pathway,...
RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from lizard RNA-seq of coding RNA 07-07-2015 This experiment contains the Anolis carolinensis subset of data from the experiment E-GEOD-41338 (ht...
The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis RNA-seq of coding RNA
ChIP-seq
06-27-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Elodea nuttallii transcriptomic response to mercury, monomethyl-mercury, copper and UV-B radiation RNA-seq of coding RNA 06-29-2015 The mechanisms of metal accumulation and toxicity in primary producers are not well understood. In a...
RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from frog RNA-seq of coding RNA 07-07-2015 This experiment contains the Xenopus tropicalis subset of data from the experiment E-GEOD-41338 (htt...
Transcriptional landscape of transkingdom communication between Candida albicans and Streptococcus gordonii RNA-seq of coding RNA 06-27-2015 Recent studies have shown that the transcriptional landscape of the pleiomorphic fungus Candida albi...
Isolation and Characterization of Clonal Adult Human Brown Adipocytes RNA-seq of coding RNA 06-29-2015 Brown adipose tissue (BAT) evolved in mammals as a natural defence system against hypothermia and ob...