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Dataset Title Keywords Date Released Description
RNA-seq for monitoring expression changes in absence of chromatin anchoring RNA-seq of coding RNA 12-20-2015 RNA-seq for monitoring expression levels in mutants that do not anchor chromatin at the nuclear peri...
RNA Seq in wild type and zfs1 deficient C. albicans RNA-seq of coding RNA 12-20-2015 Members of the tristetraprolin (TTP) family of CCCH tandem zinc finger proteins bind to AU-rich regi...
RNA Polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA Polymerase II RNA-seq of coding RNA
ChIP-seq
12-20-2015 Release of promoter-proximal paused RNA polymerase II (Pol II) during early elongation is a critical...
A microfluidic platform enabling single cell RNA-seq of multigenerational lineages RNA-seq of coding RNA 12-26-2015 We introduce a microfluidic platform that enables off-chip single-cell RNA-seq after multigeneration...
The role of antigen presenting cells in the induction of HIV-1 latency in resting CD4+ T-cells RNA-seq of coding RNA 12-26-2015 BACKGROUND: Combination antiretroviral therapy (cART) is able to control HIV-1 viral replication, ho...
Dual RNA-seq – sRNA profiling in various cell types RNA-seq of coding RNA 12-20-2015 Bacteria possess many small noncoding RNAs whose regulatory roles in pathogenesis are little underst...
Long non-coding RNAs display higher natural expression variability than protein-coding genes in healthy humans RNA-seq of coding RNA 01-09-2016 Background: Long non-coding RNAs (lncRNAs) are increasingly implicated as gene regulators and may ul...
Transcriptome-wide regulation of pre-mRNA splicing and expression by the RNA-binding protein Quaking during monocyte to macrophage differentiation [RNA-Seq] RNA-seq of coding RNA 01-09-2016 Expression levels of the RNA-binding protein Quaking (QKI) are low in monocytes of early, human athe...
Multiple waves of transcriptome changes during extended hypoxic induction in human pulmonary microvascular endothelial cells RNA-seq of coding RNA 01-02-2016 We profile the expression pattern of human pulmonary microvascular endothelial cells (HPMECs) at dif...
Transcription profiling by high throughput sequencing of somatic and reproductive tissues of Brassica rapa plants following heat shock stress exposure. RNA-seq of coding RNA 01-07-2016 In the current study we have profiled changes in the transcriptome of somatic and reproductive tissu...
Transcription profiling by high throughput sequencing of a maize IBM (Intermated B73×Mo17) RIL population derived from the cross of the inbred lines B73 and Mo17 RNA-seq of coding RNA 01-08-2016 Gene transcription is an essential step of gene function and transcriptome variation is of agronomic...
A conserved factor Dhp1/Rat1/Xrn2 triggers premature transcription termination and nucleates heterochromatin to promote gene silencing ChIP-chip by tiling array
RNA-seq of non coding RNA
01-09-2016 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
The chicken erythrocyte epigenome other
RNA-seq of coding RNA
ChIP-seq
01-10-2016 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Transcription profiling by high throughput sequencing of Arabidospsis ref8-1, med5a/5b, and med5a/5b ref8-1 mutants RNA-seq of coding RNA 01-07-2016 Mutation of the lignin biosynthetic gene REF8, which encodes p-coumaroylshikimate 3'-hydroxylase, ca...
Transcription profiling by RNA-seq of fetal liver from poly(C) binding protein 2 (Pcbp2) knockout mice RNA-seq of coding RNA 01-08-2016 RNA-binding proteins participate in a complex array of post-transcriptional controls essential to ce...
Ubiquitin-dependent turnover of MYC promotes loading of the PAF complex on RNA Polymerase II to drive transcriptional elongation RNA-seq of coding RNA
ChIP-seq
01-09-2016 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Adult mouse cortical cell taxonomy by single cell transcriptomics RNA-seq of coding RNA 01-09-2016 Nervous systems are composed of numerous cell types, but the extent of cell type diversity is poorly...
MAGE-A1 Promotes Proliferation, Migration and Invasion of Human Melanoma Cells through RNA-SEQ Analysis via Affecting C-JUN-IL8-ARHGAP29 Network RNA-seq of coding RNA 01-09-2016 To define the role of MAGE-A1 in melanoma growth and metastasis, we performed RNA-seq analysis on MA...
Transcription profiling by high throughput sequencing of maize third node in la1-ref mutant plants RNA-seq of coding RNA 01-05-2016 The classical maize mutant lazy1 (la1), displayed prostrate growth with reduced shoot gravitropism. ...
SIRT6 regulates redox homeostasis in human mesenchymal stem cells by the transactivation of NRF2 RNA-seq of coding RNA
ChIP-seq
01-09-2016 We investigated the effect of SIRT6-knockout on gene expression and H3K4me3 modification profile in ...