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Dataset Title Keywords Date Released Description
HSB-2 cells stably expressing LDB1 or mutant LDB1 proteins RNA-seq of coding RNA 12-19-2015 LMO2 is a component of multisubunit DNA-binding transcription factor complexes that regulate gene ex...
Trophoblast stem cells (TSC) global transcriptome in stemness and differentiation conditions after treatment with PF1-3 RNA-seq of coding RNA 12-18-2015 Here we report a potent, acetyl-lysine competitive and cell active inhibitor, PFI-3, that tightly bi...
NSD3-short is an adaptor protein that couples BRD4 to the CHD8 chromatin remodeler RNA-seq of coding RNA
ChIP-seq
12-18-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
AKT Inhibition Promotes Non-autonomous Cancer Cell Survival [RNA-Seq] RNA-seq of coding RNA 12-12-2015 Small-molecule inhibitors of AKT signaling are being in evaluated in patients with various cancer ty...
Human Embryoid Body Transcriptomes Reveal Maturation Differences Influenced by Size and Formation in Custom Microarrays RNA-seq of coding RNA 12-12-2015 Stem cell differentiation strategies and optimization for generating lineage-specific cells and tiss...
RNA-sequencing analysis of 5' capped RNAs identifies novel differentially expressed genes in sessile serrated colon polyps (SSPs) RNA-seq of coding RNA 12-18-2015 RNA-sequencing of SSP RNA from patients with serrated polyposis syndrome identifies VSIG1 and MUC17 ...
Aedes aegypti Cry11Aa intoxication curve transcriptome RNA-seq of coding RNA 12-19-2015 Transcriptomic analysis of mosquito larvae exposed to LC50 of Cry11Aa toxin from Bti at different ti...
Gene expression analysis to identify Klf2 target genes in B-cell progenitors [Klf2_KO] RNA-seq of coding RNA 12-19-2015 The sequential activation of distinct developmental gene networks governs the ultimate identity of a...
Identification of MEF2B, EBF1, and IL6R as chromosome bound targets of EBNA1 essential for EBV infected B-lymphocyte survival RNA-seq of coding RNA
ChIP-seq
12-19-2015 EBNA1 is the EBV-encoded nuclear antigen required for viral episome maintenance during latency. EBN...
BMP signaling in mouse embryonic stem cells (ESCs) in the naïve and primed pluripotent states [RNA-Seq] RNA-seq of coding RNA 12-12-2015 Carrying out both RNA-seq and Smad1/5 genome-wide chromatin immunoprecipitation and sequencing (ChIP...
Limiting cholesterol biosynthetic flux engages type I IFN signaling in a STING-dependent manner RNA-seq of coding RNA 12-20-2015 Cellular lipid requirements are achieved through a combination of biosynthesis and import programs. ...
A XEN-like state bridges somatic cells to pluripotency during chemical reprogramming RNA-seq of coding RNA 12-20-2015 Pluripotent stem cells can be generated from somatic cells by using pure chemicals.However, the cell...
The life history of retrocopies illuminates the evolution of new mammalian genes RNA-seq of coding RNA 12-19-2015 New genes contribute substantially to adaptive evolutionary innovation, but the functional evolution...
Somatosensory Neuron Types Identified by High-Coverage Single-Cell RNA-Sequencing and Functional Heterogeneity RNA-seq of coding RNA 12-20-2015 Sensory neurons are distinguished by distinct signaling networks and receptive characteristics. Thus...
Parallel single-cell bisulfite- and RNA-sequencing link transcriptional and epigenetic heterogeneity RNA-seq of coding RNA
methylation profiling by high throughput sequencing
12-26-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Identifying transcription start sites and active enhancer elements using BruUV-seq RNA-seq of coding RNA 12-26-2015 BruUV-seq utilizes UV light to introduce transcription-blocking DNA lesions randomly in the genome p...
Identification and characterization of MCF01A circular RNAs [RNA-seq] RNA-seq of coding RNA 12-27-2015 Circular RNAs (circRNAs) are widespread circular forms of non-coding RNAs with largely unknown funct...
Response to different types of stress converge in mitochondrial metabolism RNA-seq of coding RNA 12-27-2015 The budding yeast Saccharomyces cerevisiae was used to study 9 different stress conditions in chemos...
A serum microRNA panel as potential biomarkers for hepatocellular carcinoma related with hepatitis B virus RNA-seq of non coding RNA 12-27-2015 Background: The identification of new high sensitivity and specificity markers for HCC are essential...
Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase (BrdU) other
RNA-seq of coding RNA
12-27-2015 The S. cerevisiae Forkhead Box (FOX) proteins, Fkh1 and Fkh2, regulate diverse cellular processes in...