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Dataset Title Keywords Date Released Description
The forkhead transcription factor FOXP1 profile in B-cells and B-cell lymphoma cell lines ChIP-seq 08-19-2015 Expression of the forkhead transcription factor FOXP1 is essential for early B cell development, whe...
Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage RNA-seq of coding RNA
ChIP-seq
08-19-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
GATA4 represses an ileal program of gene expression in the proximal small intestine by inhibiting the acetylation of histone H3, lysine 27. ChIP-seq 08-19-2015 GATA4 is expressed in the proximal 85% of small intestine where it promotes a proximal intestinal ('...
Genome-wide chromatin-immunoprecipitation studies of purified SAN cells reveals critical direct targets of ISL1 and suggests potential co-factor families for ISL1 action in SAN cells ChIP-seq 08-19-2015 Understanding factors that drive development and function of the sinoatrial node (SAN) is crucial to...
Transcription factor Runx1 cooperates with MyoD and c-Jun to regulate the balance of myoblast proliferation/differentiation [ChIP-seq] ChIP-seq 08-19-2015 Runx1 is expressed in regenerating muscle, specifically in the muscle adult stem cells- the satellit...
Brg1 Modulates Enhancer Activation and Polycomb-mediated Repression in Mesoderm Differentiation [ChIP-exo] ChIP-seq 08-19-2015 We investigated the genome-wide occupancy changes in normal and Brg1-deleted mesoderm differentiatio...
RGA binding sites in Arabidopsis thaliana seedlings ChIP-seq 08-19-2015 DELLA proteins act as hubs that relay environmental information to the multiple transcriptional circ...
Androgen Receptor (AR) targets in a cell line from the mouse proximal caput epididymus ChIP-seq 08-19-2015 Sequence data represent a profile of AR network targets in proliferating and non-proliferating P17 c...
Selection for improved energy efficiency and drought tolerance in canola results in distinct transcriptome and epigenome changes [ChIP-Seq] ChIP-seq 08-19-2015 Integrated breeding strategies are used to increase both the yield potential and stability of crops....
MeCP2 binds to mCH as neurons mature, influencing transcription and onset of Rett syndrome [ChIP-Seq] ChIP-seq 08-19-2015 The postnatal neurodevelopmental disorder Rett syndrome (RTT) is caused by mutations in the gene enc...
Genome-wide mapping of Collier in vivo binding sites highlights its hierarchical position in different transcription regulatory networks ChIP-seq 08-19-2015 Collier, the single Drosophila COE (Collier/EBF/Olf-1) transcription factor, is required in several ...
Salt augments macrophage-driven host defense in the skin ChIP-seq 02-24-2015 Immune cells regulate a hypertonic microenvironment in the skin; however, possible functions of incr...
An anti-silencer- and SATB1-dependent chromatin hub regulates Rag1 and Rag2 gene expression during thymocyte development ChIP-seq 02-27-2015 Rag1 and Rag2 gene expression in CD4+CD8+ double positive (DP) thymocytes depends on the activity of...
PARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription ChIP-seq 09-06-2015 Transcriptionally active and inactive chromatin domains tend to segregate into separate sub-nuclear ...
Environmentally Induced Epigenetic Transgenerational Inheritance of Altered SRY Genomic Binding During Gonadal Sex Determination ChIP-chip by tiling array 09-06-2015 A critical transcription factor required for mammalian male sex determination is SRY (sex determinin...
piRNA-guided slicing of transposon transcripts enforces their transcriptional silencing via specifying the nuclear piRNA repertoire RNA-seq of coding RNA
ChIP-seq
RNA-seq of non coding RNA
09-06-2015 PIWI-clade Argonaute proteins silence transposon expression in animal gonads. Their target specifici...
BCL6 is required for the initiation and maintenance of chronic myeloid leukemia ChIP-seq 09-10-2015 We identified the BCL6 protooncogene as a critical downstream effector of FoxO3A in self-renewal sig...
Rif1 binds to G-quadruplexes and suppresses replication over a long distances ChIP-seq 09-11-2015 Rif1 regulates replication timing and repair of double-stranded DNA breaks. Using Chromatin-immunopr...
Bcl3 target genes in mESCs ChIP-seq 08-20-2015 Bcl3 is expressed in mESCs. ChIP-seq was used to identify its binding pattern and target genes. ChIP...
Complete hematologic response of early-T-cell progenitor acute lymphoblastic leukemia to the gamma-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case other
RNA-seq of coding RNA
ChIP-seq
08-20-2015 Notch pathway antagonists such as gamma-secretase inhibitors (GSI) are being tested in diverse cance...