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Dataset Title Keywords Date Released Description
Cytokine-independent detection of antigen-specific germinal center T follicular helper (Tfh) cells in immunized non-human primates using a live cell Activation Induced Marker (AIM) technique RNA-seq of coding RNA 09-12-2016 A range of current candidate AIDS vaccine regimens are focused on generating protective HIV neutrali...
Impact of bariatric surgery on RNA-seq gene expression profiles of peripheral monocytes in humans RNA-seq of coding RNA 08-19-2015 Genome-wide expression profiles in peripheral monocytes (PM) from 19 obese women before and 3 months...
Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development RNA-seq of coding RNA 08-19-2015 Alternative splicing (AS) generates vast transcriptomic complexity in the vertebrate nervous system....
Bulk RNA-seq analysis of Type 5 retinal bipolar cells from the Htr3a-GFP line RNA-seq of coding RNA 09-12-2016 15,000 GFP+ cells were collected from two replicates of the Htr3a GFP line into RNAlater (ThermoFish...
Steinernema carpocapsae Breton small RNA sequencing insect in vitro simulation system, from "The genome, transcriptome, and proteome of the nematode Steinernema carpocapsae: evolutionary signatures of a pathogenic lifestyle" RNA-seq of non coding RNA 09-12-2016 We report small RNA sequencing of the entomopathogenic nematode Steinernema carpocapsae. The nematod...
Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage RNA-seq of coding RNA
ChIP-seq
08-19-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Transcriptomic changes in aquaporin PIP1;2 deficient Arabodposis plants RNA-seq of coding RNA 08-19-2015 The leaf transcriptome of the Arabidopsis thaliana aquaporin gene PIP1;2 T-DNA insertion line was co...
RNA-Seq of cKIT+ sorted cells from 53-137 day old fetal testes and ovaries and RNA-Seq of TRA-1-81+ H1 and UCLA1 hESCs. RNA-seq of coding RNA 08-19-2015 We performed RNA-Seq analyses on 15 human fetal samples at 53-137 days of development, 9 female and ...
Identification and characterization of wilt and salt stress-responsive microRNAs from chickpea by high-throughput sequencing. RNA-seq of non coding RNA 08-19-2015 Purpose: To identify Fusarium wilt and salt-responsive miRNAs at genome wide level in Chickpea. Resu...
Functional and Transcriptomic Characterization of iPSC-derived Macrophages and their Application in Modeling Mendelian Disease RNA-seq of coding RNA 08-19-2015 Using RNA-Seq, we reported novel findings in the comparison of transcriptome profiles of isogenic HM...
Characterizing the interactions between a naturally-primed IgA and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice [RNA-Seq] RNA-seq of coding RNA 08-19-2015 We report the mid-log phase transcriptional profile of the human gut symbiont Bacteroides thetaiotao...
Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure RNA-seq of non coding RNA 08-19-2015 High-throughput sequencing (HTS) has become a powerful tool for the detection of and sequence charac...
A food deprivation affects the miRNome in the lactating goat mammary gland RNA-seq of non coding RNA 08-19-2015 Nutrition affects milk composition influencing its nutritional properties. Nutrition also modifies t...
Distinct regulatory programs for Sox9 in transcriptional regulation of the developing mammalian chondrocyte [RNA-seq] RNA-seq of coding RNA 08-19-2015 We compared Sox9-association at chondrocyte targets to a broad catalogue of regulatory indicators of...
Drop-Seq analysis of ERCC spike in capture other
RNA-seq of coding RNA
08-19-2015 A bead supsension and a solution of ERCC spike-ins at a concentration of ~100,000 molecules per drop...
Transcriptomics and Metabolomics of 10 - 28 day post anthesis cotton fiber from Gossypium hirsutum and Gossypium barbadense RNA-seq of coding RNA 08-19-2015 Purpose: The goal of this experiment was to use RNA-seq to compare the two commercial cotton species...
Optimal codons in Tremella fuciformis end in C/G, a strong difference with known Tremella species RNA-seq of coding RNA 08-19-2015 Tremella fuciformis is a popular edible fungus with fruiting bodies that can be produced in large qu...
RNA sequencing analysis of miR-603 overexpression RNA-seq of coding RNA 08-19-2015 Alzheimer’s disease (AD) is a serious neurodegenerative disease in which miRNAs have been linked t...
Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury RNA-seq of coding RNA 08-19-2015 Heterogeneous pools of adult neural stem cells (NSCs) contribute to brain maintenance and regenerati...
Omic Personality: The Longitudinal Consistency of Transcriptional, Epigenetic and Clinical Profiles [miRNA-Seq] RNA-seq of non coding RNA 08-19-2015 Background: Personalized medicine is predicated on the notion that individual biochemical and geno...