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Dataset Title Keywords Date Released Description
Epigenomic Evolution of Diffuse Large B-cell Relapse methylation profiling by high throughput sequencing 08-19-2015 Here we characterize an association between disease progression and DNA methylation in Diffuse Large...
Comprehensive genomic analysis of relapse neuroblastoma [methylation] methylation profiling by array 06-27-2015 Relapse neuroblastoma were characterized by sequencing, gene expression, arrayCGH and genome-wide me...
TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer RNA-seq of coding RNA
methylation profiling by high throughput sequencing
12-12-2015 5-hydroxymethylcytosine (5-mC) and gene expression profiling of T84 cell differentiation; 5-hmC prof...
Childhood Atopic Asthma methylation profiling by array
transcription profiling by array
12-03-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue methylation profiling by array 12-08-2015 Genome wide DNA methylation profiling of clear cell renal cell carcinoma (ccRCC) tissue versus match...
Trans-effects of chromosome aneuploidies on DNA methylation patterns: DNA methylation analysis of Down syndrome in human brain tissues and cells methylation profiling by array 12-08-2015 Background: Trisomy 21 causes Down syndrome (DS), but the mechanisms by which the extra chromosome l...
Tet1 is a tumor suppressor of hematopoietic malignancy methylation profiling by high throughput sequencing 08-19-2015 Epigenetic pathways that regulate DNA methylation and chromatin modifications are frequently found t...
Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. methylation profiling by high throughput sequencing 08-19-2015 We performed WGBS analyses on 6 human fetal samples at 53-137 days of development, 4 female and 2 ma...
Symmetrical dose-dependent DNA methylation profiles in children with deletion or duplication of chromosome 7q11.23 methylation profiling by array 08-19-2015 Genome wide DNA methylation in blood derived DNA from individuals with deletion or duplication of 7q...
Genome-wide analysis of DNA methylation and gene expression patterns in purified, uncultured human liver cells and activated hepatic stellate cells methylation profiling by array 12-26-2015 The human liver contains multiple cell types whose epigenetic patterns are undetermined. We examined...
Epo-Induced Erythroid Maturation Is Dependent on Plcγ1 Signaling methylation profiling by high throughput sequencing 01-11-2016 Erythropoiesis is a tightly regulated process. Development of red blood cells occurs through differe...
A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [T-cells] methylation profiling by high throughput sequencing 01-10-2016 To characterize the largely unknown functions of oxidised methylcytosines (oxi-mC; 5hmC/5fC/5caC) in...
Methylome study in Nasopharyngeal Carcinoma (NPC) methylation profiling by array 01-10-2016 Aberrant methylation at the promoter region of tumor suppressors is frequently reported in NPC; howe...
Evaluation of Inter-Batch Differences in Stem-Cell Derived Neurons methylation profiling by array 12-19-2015 Genome wide DNA methylation profiling of Neurons derived from human induced pluripotent stem cells (...
Parallel single-cell bisulfite- and RNA-sequencing link transcriptional and epigenetic heterogeneity RNA-seq of coding RNA
methylation profiling by high throughput sequencing
12-26-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Genome-wide DNA methylation profiling in the superior temporal gyrus reveals epigenetic signatures associated with Alzheimer's disease methylation profiling by array 12-27-2015 Recent work has identified roles for environmental, genetic and epigenetic factors in AD risk. Motiv...
Whole-genome saliva and blood DNA methylation patterns in individuals with a respiratory allergy methylation profiling by array 01-09-2016 It has been suggested that the etiology of respiratory allergies (RA) can be partly explained by DNA...
Global DNA methylation landscape reveals roles of DNA methylation involved in the regulation of drug metabolizing enzyme [II] methylation profiling by array 06-21-2015 In order to elucidate the role of DNA methylation in the DME gene regulation, global DNA methylation...
Association of DNA Methylation with Acute Mania and Inflammatory Markers methylation profiling by array 06-27-2015 Genome wide DNA methylation profiling of serum samples from 20 individuals hospitalized with acute m...
Methylation microarray studies highlight PDGFA expression as a factor in biliary atresia methylation profiling by array 06-19-2015 Biliary atresia (BA) is a progressive fibro-inflammatory disorder that is the leading indication for...
Transcription and Imprinting Dynamics in Developing Postnatal Male Germline Stem Cells RNA-seq of coding RNA
ChIP-seq
methylation profiling by high throughput sequencing
12-01-2015 Paternal imprinting initiates in primordial germ cells (PGCs), and is considered largely completed a...
Epigenetic profiling in CD4 and CD8 T cells from Graves’ disease patients reveals changes in genes associated with T cell receptor signaling [methylation] methylation profiling by array 12-01-2015 In Graves’ disease (GD), a combination of genetic, epigenetic and environmental factors causes an ...
Methyl-CpG-binding domain (MBD) sequencing of neuroblastoma tumors methylation profiling by high throughput sequencing 11-30-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development RNA-seq of coding RNA
ChIP-seq
methylation profiling by high throughput sequencing
12-01-2015 Early mouse development is accompanied by dynamic changes in chromatin modifications, including G9a-...
Dexamethasone-stimulated DNA methylation of the epigenetic clock CpGs in peripheral blood methylation profiling by array 12-02-2015 Whole-genome DNA methylation (baseline and following GR-stimulation with 1.5 mg dexamethasone p.o.) ...
DNA methylation data from cell lines originating from patients with multiple myeloma methylation profiling by array 08-19-2015 We performed genome-wide DNA methylation profiling of KMS11, MM.1S, and RPMI8226 multiple myeloma ce...
DNA methylation data from 11 normal and 9 chronic periodontitis patients from site USC methylation profiling by array 08-19-2015 Microarray methylation (Infinium®HumanMethylation 450 BeadChip from Illumina) was performed on 11 n...
Gene expression and epigenetic sexual dimorphism in two jewel wasp species Nasonia vitripennis and Nasonia giraulti [Bisulfite-Seq] methylation profiling by high throughput sequencing 06-13-2015 The extraordinary range in the degree of sexual dimorphism (SD) among animal species is widely perce...
Cerebellum Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects methylation profiling by array 06-13-2015 Genome wide DNA methylation profiles of cerebellum from HIV positive and HIV negative human subjects...
DNA methylation levels of various brain regions from HIV+ and HIV- subjects methylation profiling by array 06-13-2015 Genome wide DNA methylation profiles of various human brain regions (cerebellum, occipital lobe, etc...
Lead exposure induces changes in 5-hydroxymethylcytosine clusters in CpG islands in human embryonic stem cells and umbilical cord blood methylation profiling by array 06-13-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Active Demethylation of Both Maternal and Paternal Genomes in Mouse Zygotes methylation profiling by high throughput sequencing 09-12-2016 The epigenomes of mammalian sperm and oocytes, characterized by gamete-specific 5-methylcytosine (5m...
An epigenetic memory of pregnancy in the mouse mammary gland methylation profiling by high throughput sequencing 08-19-2015 Pregnancy is the major modulator of mammary gland activity. It induces a tremendous expansion of the...
Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-TAB-seq methylation profiling by high throughput sequencing 08-19-2015 N4-methylcytosine is a major DNA modification integral to restriction-modification (R-M) systems in ...
Wnt inhibitory factor 1 (WIF1) is a marker of osteoblastic differentiation stage and is not silenced by DNA methylation in osteosarcoma methylation profiling by array
transcription profiling by array
08-19-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
DNA methylation changes in fetal germ cells exposed to endocrine disruptors and in the next generation [methylation set 1] methylation profiling by array 02-21-2015 According to recent reports, exposure to environmental endocrine disrupting chemicals (EDs) during p...
Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos (MRE-seq) methylation profiling by high throughput sequencing 02-21-2015 DNA methylation undergoes dynamic changes during development and cell differentiation. Recent genome...
MIWI2 and MILI have differential effects on piRNA biogenesis and DNA methylation RNA-seq of coding RNA
methylation profiling by high throughput sequencing
RNA-seq of non coding RNA
08-20-2015 In developing male germ cells, prospermatogonia, two Piwi proteins, MILI and MIWI2, use piRNA guides...
Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells methylation profiling by array
methylation profiling by high throughput sequencing
transcription profiling by array
08-26-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Arterial endothelial methylome: Differential DNA methylation methylation profiling by high throughput sequencing 04-15-2015 Atherosclerosis preferentially develops in arterial regions where hemodynamic disturbed flow and oxi...
DNA methylation of matched primary-metastases medulloblastomas methylation profiling by array 04-04-2015 DNA methylation was generated from 11 pairs of matched primary-metastases medulloblastoma samples us...
ALK-dependent transcription factor networks are associated with epigenomic alterations of DNA methylation in ALCL methylation profiling by array 04-04-2015 Aberrant DNA methylation patterns of malignant cells allow for the study of the tumor phenotype and ...
Genome-wide Scan for Methylation Profiles in Breast Cancer methylation profiling by array 03-15-2015 Genome wide DNA methylation profiling of normal and breast cancer samples. The Illumina Infinium 450...
Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera) RNA-seq of coding RNA
methylation profiling by high throughput sequencing
04-02-2015 Here, we examined the transcriptional and epigenetic (DNA methylation) responses to viral infection ...
Identification of a DNA methylation signature in blood from subjects affected by Down syndrome methylation profiling by array 03-09-2015 Down syndrome is characterized by a wide spectrum of clinical signs, which include cognitive and end...
Direct but No Transgenerational Effects of Decitabine and Vorinostat on Male Fertility methylation profiling by high throughput sequencing 03-12-2015 Epigenetic drugs actively altering the epigenome of tumours have been developed for use in anti-canc...
Haploinsufficiency, but not defective paternal 5mC oxidation, accounts for the developmental defects of maternal Tet3 knockouts methylation profiling by high throughput sequencing 03-12-2015 DNA demethylation of paternal genome in zygotes takes place in various mammals including mice and hu...
Transcriptome analysis and Genome-wide DNA methylation maps in chronic lymphocytic leukemia cells determined by next-generation sequencing RNA-seq of coding RNA
methylation profiling by high throughput sequencing
03-01-2015 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
Treatment with GC/RA and combination with AZA/SAHA in MYC amplified and BRG1 mutant lung cancer cell lines methylation profiling by array
transcription profiling by array
09-12-2016 This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
An integrated genetic-epigenetic analysis of schizophrenia: Evidence for co-localization of genetic associations and differential DNA methylation methylation profiling by array 08-06-2016 Background: Schizophrenia is a severe, highly heritable, neuropsychiatric disorder characterized by ...