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Title Description Data Acquisition Date Released
GitHub repository gitter-lab/pria_lifechem software archive Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library. N/A 06-01-2018
genome-analysis-workflows CWL workflow definitions for executing MGI analysis pipelines CWL and docker based pipelines for analysis of high-throughput sequence data on local or cloud compu... N/A
Cerebral Cortex cloud platform example code Example code that to demonstrate the capabilities of the Cerebral Cortex Kernel N/A
DEEPEST-Fusion This is a statistical fusion detection algorithm particularly engineered for screening big RNA seque... N/A
Tools and workflow to produce VCF files from BAM files using Google Cloud Pipelines Although Google Cloud Genomics and Sentieon pipelines support robust tools to obtain high quality VC... N/A 08-29-2018
Processed ATAC-seq from dorsolateral-prefrontal cortex in adult brain Processed data ATAC-seq data from 341 samples from dorsolateral-prefrontal cortex samples of individ... N/A
iTextMine iTextMine is an Integrated Text Mining System for Large Scale Knowledge Extraction from Literature. ... N/A
OpenNeuro-processed OpenNeuro dataset processed with various neuroimaging tools and pipelines N/A
Regtools software Source code for the regtools application N/A 02-22-2019
Protein Ontology (PRO) Protein Ontology (PRO) provides an ontological representation of protein-related entities by explici... N/A
GTEx exon-exon-junction-level expression summary for Snaptron GTEx exon-exon-junction-level expression summary from the Snaptron collection. Format is a tab-sepa... N/A 02-25-2019
PIRSitePredict PIRSitePredict is a prediction tool for the position specific annotations based on PIR site rules. I... N/A
Docker Image for Oracle Database with NHANES dataset Oracle Database is pre-populated with the CDC NHANES public dataset (41,474 patients with ~1,300 var... N/A 07-08-2018
ADHD200-processed ADHD200 dataset processed with various neuroimaging tools and pipelines N/A
Pipeline to detect retroCNVs in the human genome Collection of source code and reference files necessary and sufficient to detect retroCNVs in the hu... N/A
Regtools annotated TCGA exon-exon junctions Exon-exon junction coordinates and annotations with splicing features for all TCGA cases with RNA-se... N/A 02-22-2019
ParaView Glance An in-browser visualization application for viewing multiple types of 3D data N/A 07-19-2018
GTEx gene-level expression summary for Snaptron GTEx gene-level expression summary from the Snaptron collection. Format is a tab-separated text fil... N/A 02-25-2019
CIViC web application front-end cancer variant curation interface Web application front-end providing a sophisticated curation, browse and search interface for clinic... N/A 01-31-2017
Streaming Sepsis Prediction System for Intensive Care Units Code accompanying: Henry JR, Lynch D, Mals J, Shashikumar SP, Holder A, Sharma A, Nemati S. A FHIR-E... N/A