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Title: C. elegans RNA Sequence for viral discovery      
dateReleased:
12-19-2016
privacy:
information not avaiable
aggregation:
instance of dataset
dateCreated:
06-12-2014
refinement:
curated
ID:
doi:10.7272/Q65Q4T1R
availability:
available
types:
other
description:
Nucleic acid from two nematode species, C. elegans JU1580 (isolated from a rotting apple in Orsay, France) and C. briggsae JU1264 (isolated from a snail on a rotting grape in Santeuil, France) were prepared and pyrosequenced on the Roche Titanium Genome Sequencer. Raw sequence reads were filtered for quality and repetitive sequences as described in "Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses" by F?©lix et al (http://www.ncbi.nlm.nih.gov/pubmed/21283608). Two novel members of the Nodaviridae viral family, Orsay nodavirus and Santeuil nodavirus, were discovered in the the 15933 and 20,787 reads, respectively. 1046 Orsay nodavirus reads were found in the C. elegans samples while 2492 Santeuil nodavirus reads were identified in in the C. briggsae sample. The data are provided in FASTA format.
accessURL: https://doi.org/10.7272/Q65Q4T1R
storedIn:
University of California, San Francisco
qualifier:
not compressed
format:
HTML
accessType:
landing page
authentication:
none
authorization:
none
abbreviation:
UCSF
homePage: http://www.ucsf.edu/
ID:
SCR:010605
name:
University of California at San Francisco
abbreviation:
UCSF-CTSI
homePage: https://ctsi.ucsf.edu/
ID:
SCR:014711
name:
UCSF Clinical & Translational Science Institute