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Title: Co-activator function of RIP140 for NF?B/p65-dependent cytokine gene      
keywords:
Transcriptome or Gene expression
ID:
PRJNA108129
description:
High- and low-grade inflammatory responses represent a hallmark of numerous pathologies such as sepsis and bacterial infection or insulin resistance and obesity, respectively. Here we describe an unexpected co-activator function of receptor interacting protein (RIP) 140 for nuclear factor (NF) kB, a master transcriptional regulator of inflammation in multiple tissues. Genetic as well as acute deficiency of RIP140, which has been characterized as a co-repressor of various nuclear receptors on metabolic target genes, led to the inhibition of the proinflammatory program in macrophages, mediated by RIP140’s direct impact on cytokine gene promoter activity. Intriguingly, RIP140’s co-activator function in this setting was found to rely on direct protein-protein interactions with the NF?B subunit p65 and histone acetylase CREB-binding protein (CBP). RIP140-dependent control of proinflammatory gene expression via p65/CBP may, therefore, represent a molecular rational for the cellular integration of metabolic and inflammatory pathways. Keywords: expression profiling Overall design: Gene expression profiling was done for macrophages from RIP140 knockout or wild-type mice. RNA isolation, cDNA and cRNA synthesis, and hybridization to arrays of type Mouse Genome 430 2.0 from Affymetrix (Santa Clara, CA, USA) were performed according to manufacturer’s recommendations. 3 arrays per genotype were hybridized. Microarray data were analysed based on ANOVA using a commercial software package (Micro Array Solution, version 1.0, SAS Institute, Cary, NC, USA). Standard settings were used, except the following specifications: log-linear mixed models were fitted for values of perfect-matches, with genotype considered to be constant and the array-id random. Custom CDF with Unigene based gene/transcript definitions was used to annotate the arrays.
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landingpage: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA108129
authentication:
none
authorization:
none
ID:
pmid:18469200
dateReleased:
03-31-2008
name:
Mus musculus
ncbiID:
ncbitax:10090
abbreviation:
NCBI
homePage: http://www.ncbi.nlm.nih.gov
ID:
SCR:006472
name:
National Center for Biotechnology Information
homePage: http://www.ncbi.nlm.nih.gov/bioproject
ID:
SCR:004801
name:
NCBI BioProject