Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: All trans-retinoic acid (ATRA) effect on triple negative (TNBC) and luminal (LumA/LumB) primary breast tumors      
dateReleased:
03-31-2015
description:
We performed whole genome gene expression microarrays on short-term cultures of mammary tumors deriving from diagnostic Tru-cut procedures of 16 patients in order to evaluate transcriptional response to the retinoid. Tissue slices were challenged with vehicle (DMSO) or ATRA 0.1åµm for 48 hours. The panel consisted of 11 luminal (7xLumA / 4xLumB) and 5 triple negative (TN) primary tumors. All the LumA and LumB tumors were characterized by >70% ER+ cells.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-MTAB-3313
refinement:
raw
dateSubmitted:
12-31-2014
keywords:
functional genomics
dateModified:
02-11-2015
creators:
MARCO BOLIS
availability:
available
types:
gene expression
name:
Homo sapiens
name:
compound treatment design
ID:
A-MEXP-2320
name:
Agilent SurePrint G3 Human Gene Expression array v2, 8x60k, 384 rows x 164 cols
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3313/E-MTAB-3313.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-MTAB-3313/E-MTAB-3313.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

Feedback?

If you are having problems using our tools, or if you would just like to send us some feedback, please post your questions on GitHub.