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Title: LuxS/AI-2 quorum sensing microarray comparison in Yersinia pestis at 30°C      
dateReleased:
07-03-2016
description:
The AI-2 quorum-sensing system has been linked to diverse phenotypes and regulatory changes in pathogenic bacteria. In strain CO92, the AI-2 signal is produced in a luxS-dependent manner, reaching maximal levels of 2.5 μM in late logarithmic growth, and both wild type and pigmentation mutant strains made equivalent levels of AI-2. Y. pestis CO92 possesses a chromosomal lsr locus encoding factors involved in the binding and import of AI-2, and confirming this assignment, an lsr deletion increased extracellular pools of AI-2. To assess the functional role of AI-2 sensing in Y. pestis, microarray study was conducted comparing the ∆Pgm strain R88 to a ∆Pgm ∆luxS mutant at 30°C to mimic the flea gut. Six independent RNA samples from Y. pestis CO92 ΔPgm cultures were paired with six independent RNA samples from ΔPgm ΔluxS cultures for hybridization to six two-color microarrays. A dye-swap design was used to remove the Cy5 and Cy3 dye bias.
privacy:
not applicable
aggregation:
instance of dataset
ID:
E-GEOD-30108
refinement:
raw
alternateIdentifiers:
30108
keywords:
functional genomics
dateModified:
12-28-2016
availability:
available
types:
gene expression
name:
Yersinia pestis
ID:
A-GEOD-10017
name:
WUSTL Yersinia pestis 15K array
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30108/E-GEOD-30108.raw.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ebi.ac.uk/arrayexpress/files/E-GEOD-30108/E-GEOD-30108.processed.1.zip
storedIn:
ArrayExpress
qualifier:
gzip compressed
format:
TXT
accessType:
download
authentication:
none
authorization:
none
accessURL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30108
storedIn:
Gene Expression Omnibus
qualifier:
not compressed
format:
HTML
accessType:
landing page
primary:
true
authentication:
none
authorization:
none
abbreviation:
EBI
homePage: http://www.ebi.ac.uk/
ID:
SCR:004727
name:
European Bioinformatics Institute
homePage: https://www.ebi.ac.uk/arrayexpress/
ID:
SCR:002964
name:
ArrayExpress

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