biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | Structure of AMPK in complex with Br2-A769662core activator and STAUROSPORINE inhibitor
|
| description: |
5'-AMP-activated protein kinase catalytic subunit alpha-1 (E.C.2.7.11.1, 2.7.11.27, 2.7.11.31, 2.7.11.26), 5'-AMP-activated protein kinase subunit beta-1, 5'-AMP-activated protein kinase subunit gamma-1
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| privacy: |
not applicable
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| aggregation: |
instance of dataset
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| ID: |
PDB:4QFS
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| refinement: |
curated
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| keywords: |
signaling protein/inhibitor/activator
CBM
Kinase
AMPK
signaling protein-inhibitor-activator complex
|
| creators: |
Calabrese, M.F.
Rajamohan, F.
Harris, M.S.
Caspers, N.L.
Magyar, R.
Withka, J.M.
Wang, H.
Borzilleri, K.A.
Sahasrabudhe, P.V.
Hoth, L.R.
Geoghegan, K.F.
Han, S.
Brown, J.
Subashi, T.A.
Reyes, A.R.
Frisbie, R.K.
Ward, J.
Miller, R.A.
Landro, J.A.
Londregan, A.T.
Carpino, P.A.
Cabral, S.
Smith, A.C.
Conn, E.L.
Cameron, K.O.
Qiu, X.
Kurumbail, R.G.
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| availability: |
available
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| types: |
structure
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| name: |
Rattus norvegicus
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| ID: |
ncbitax:10116
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| name: |
Rattus norvegicus
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| ID: |
ncbitax:10116
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| name: |
Rattus norvegicus
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| ID: |
ncbitax:10116
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| name: |
Escherichia coli
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| ID: |
ncbitax:562
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| name: |
Escherichia coli
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| ID: |
ncbitax:562
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| name: |
Escherichia coli
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| ID: |
ncbitax:562
|
| authors: |
Calabrese, M.F.
Rajamohan, F.
Harris, M.S.
Caspers, N.L.
Magyar, R.
Withka, J.M.
Wang, H.
Borzilleri, K.A.
Sahasrabudhe, P.V.
Hoth, L.R.
Geoghegan, K.F.
Han, S.
Brown, J.
Subashi, T.A.
Reyes, A.R.
Frisbie, R.K.
Ward, J.
Miller, R.A.
Landro, J.A.
Londregan, A.T.
Carpino, P.A.
Cabral, S.
Smith, A.C.
Conn, E.L.
Cameron, K.O.
Qiu, X.
Kurumbail, R.G.
|
| alternateID: |
doi:10.1016/j.str.2014.06.009
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| year: |
2014
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| ID: | pmid:25066137 |
| title: |
Structural Basis for AMPK Activation: Natural and Synthetic Ligands Regulate Kinase Activity from Opposite Poles by Different Molecular Mechanisms.
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| formula: |
C2 H5 N O2
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| name: |
GLYCINE
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| roles: |
chemical component
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| formula: |
C6 H15 N4 O2 1
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| name: |
ARGININE
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| roles: |
chemical component
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| formula: |
C5 H11 N O2
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| name: |
VALINE
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| roles: |
chemical component
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| formula: |
C6 H15 N2 O2 1
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| name: |
LYSINE
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| roles: |
chemical component
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| formula: |
C6 H13 N O2
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| name: |
ISOLEUCINE
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| roles: |
chemical component
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| formula: |
C6 H10 N3 O2 1
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| name: |
HISTIDINE
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| roles: |
chemical component
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| formula: |
C9 H11 N O3
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| name: |
TYROSINE
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| roles: |
chemical component
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| formula: |
C6 H13 N O2
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| name: |
LEUCINE
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| roles: |
chemical component
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| formula: |
C4 H7 N O4
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| name: |
ASPARTIC ACID
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| roles: |
chemical component
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| formula: |
C4 H9 N O3
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| name: |
THREONINE
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| roles: |
chemical component
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| formula: |
C9 H11 N O2
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| name: |
PHENYLALANINE
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| roles: |
chemical component
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| formula: |
C5 H9 N O4
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| name: |
GLUTAMIC ACID
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| roles: |
chemical component
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| formula: |
C3 H7 N O2
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| name: |
ALANINE
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| roles: |
chemical component
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| formula: |
C4 H8 N2 O3
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| name: |
ASPARAGINE
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| roles: |
chemical component
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| formula: |
C5 H10 N2 O3
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| name: |
GLUTAMINE
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| roles: |
chemical component
|
| formula: |
C3 H7 N O3
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| name: |
SERINE
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| roles: |
chemical component
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| formula: |
C5 H9 N O2
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| name: |
PROLINE
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| roles: |
chemical component
|
| formula: |
C5 H11 N O2 S
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| name: |
METHIONINE
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| roles: |
chemical component
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| formula: |
C3 H7 N O2 S
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| name: |
CYSTEINE
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| roles: |
chemical component
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| formula: |
C4 H10 N O6 P
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| name: |
PHOSPHOTHREONINE
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| roles: |
chemical component
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| formula: |
C11 H12 N2 O2
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| name: |
TRYPTOPHAN
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| roles: |
chemical component
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| formula: |
C28 H26 N4 O3
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| name: |
STAUROSPORINE
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| roles: |
chemical component
|
| formula: |
C14 H6 BR2 N2 O2 S
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| name: |
2-BROMO-3-(4-BROMOPHENYL)-4-HYDROXY-6-OXO-6,7-DIHYDROTHIENO[2,3-B]PYRIDINE-5-CARBONITRILE
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| roles: |
chemical component
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| formula: |
CL -1
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| name: |
CHLORIDE ION
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| roles: |
chemical component
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| formula: |
C10 H14 N5 O7 P
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| name: |
ADENOSINE MONOPHOSPHATE
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| roles: |
chemical component
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| formula: |
O4 S -2
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| name: |
SULFATE ION
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| roles: |
chemical component
|
| name: |
Ampk1, Prkaa1
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| name: |
Prkab1
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| name: |
Prkag1
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| name: |
X-RAY DIFFRACTION
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| ID: |
pdb:4QFS
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| ID: |
rcsb:RCSB085999
|
| accessURL: | https://files.rcsb.org/download/4QFS.xml.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBML/XML
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4QFS.pdb.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4QFS.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBx/mmCIF
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=4QFS |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
FASTA
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4QFS-sf.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
CIF
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4QFS.pdb1.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format (A)
|
| accessType: |
download
|
| authentication: |
none
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| authorization: |
none
|
| accessURL: | http://www.rcsb.org/pdb/explore/jmol.do?structureId=4QFS&bionumber=1 |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
JSmol
|
| accessType: |
view
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| authentication: |
none
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| authorization: |
none
|
| abbreviation: |
wwPDB
|
| homePage: | http://www.wwpdb.org |
| ID: |
SCR:006555
|
| name: |
Worldwide Protein Data Bank
|
| abbreviation: |
PDB
|
| homePage: | http://www.rcsb.org/pdb/ |
| ID: |
SCR:012820
|
| name: |
Protein Data Bank
|
Structure of AMPK in complex with Cl-A769662 activator and STAUROSPORINE in...
Structure of AMPK in complex with STAUROSPORINE inhibitor and in the absenc...
Structure of AMPK bound to activator...
AMPK bound to allosteric activator...
Structure of full length human AMPK in complex with a small molecule activa...
Crystal structure of the phosphorylated human alpha1 beta2 gamma1 holo-AMPK...