biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
|
| description: |
CCAAT/ENHANCER BINDING PROTEIN BETA, RUNT-RELATED TRANSCRIPTION FACTOR 1
|
| privacy: |
not applicable
|
| aggregation: |
instance of dataset
|
| ID: |
PDB:1HJB
|
| refinement: |
curated
|
| keywords: |
TRANSCRIPTION/DNA
PROTEIN-DNA COMPLEX
TRANSCRIPTION FACTOR
BZIP
RUNX
RUNT
C/EBP
CBF
CORE BINDING FACTOR
AML1
AML
TRANSCRIPTION-DNA complex
|
| creators: |
Tahirov, T.H.
Inoue-Bungo, T.
Morii, H.
Fujikawa, A.
Sasaki, M.
Kimura, K.
Shiina, M.
Sato, K.
Kumasaka, T.
Yamamoto, M.
Ishii, S.
Ogata, K.
|
| availability: |
available
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| types: |
structure
|
| strain: |
BL21(DE3)
|
| name: |
HOMO SAPIENS
|
| ID: |
ncbitax:9606
|
| strain: |
BL21(DE3)
|
| name: |
MUS MUSCULUS
|
| ID: |
ncbitax:10090
|
| name: |
ESCHERICHIA COLI
|
| ID: |
ncbitax:469008
|
| name: |
ESCHERICHIA COLI
|
| ID: |
ncbitax:469008
|
| authors: |
Tahirov, T.H.
Inoue-Bungo, T.
Morii, H.
Fujikawa, A.
Sasaki, M.
Kimura, K.
Shiina, M.
Sato, K.
Kumasaka, T.
Yamamoto, M.
Ishii, S.
Ogata, K.
|
| alternateID: |
doi:10.1016/S0092-8674(01)00271-9
|
| year: |
2001
|
| ID: | pmid:11257229 |
| title: |
Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta
|
| formula: |
C4 H7 N O4
|
| name: |
ASPARTIC ACID
|
| roles: |
chemical component
|
| formula: |
C6 H15 N2 O2 1
|
| name: |
LYSINE
|
| roles: |
chemical component
|
| formula: |
C6 H10 N3 O2 1
|
| name: |
HISTIDINE
|
| roles: |
chemical component
|
| formula: |
C3 H7 N O3
|
| name: |
SERINE
|
| roles: |
chemical component
|
| formula: |
C5 H9 N O4
|
| name: |
GLUTAMIC ACID
|
| roles: |
chemical component
|
| formula: |
C9 H11 N O3
|
| name: |
TYROSINE
|
| roles: |
chemical component
|
| formula: |
C6 H13 N O2
|
| name: |
ISOLEUCINE
|
| roles: |
chemical component
|
| formula: |
C6 H15 N4 O2 1
|
| name: |
ARGININE
|
| roles: |
chemical component
|
| formula: |
C4 H8 N2 O3
|
| name: |
ASPARAGINE
|
| roles: |
chemical component
|
| formula: |
C3 H7 N O2
|
| name: |
ALANINE
|
| roles: |
chemical component
|
| formula: |
C5 H11 N O2
|
| name: |
VALINE
|
| roles: |
chemical component
|
| formula: |
C5 H11 N O2 S
|
| name: |
METHIONINE
|
| roles: |
chemical component
|
| formula: |
C6 H13 N O2
|
| name: |
LEUCINE
|
| roles: |
chemical component
|
| formula: |
C4 H9 N O3
|
| name: |
THREONINE
|
| roles: |
chemical component
|
| formula: |
C5 H10 N2 O3
|
| name: |
GLUTAMINE
|
| roles: |
chemical component
|
| formula: |
C9 H11 N O2
|
| name: |
PHENYLALANINE
|
| roles: |
chemical component
|
| formula: |
C2 H5 N O2
|
| name: |
GLYCINE
|
| roles: |
chemical component
|
| formula: |
C5 H9 N O2
|
| name: |
PROLINE
|
| roles: |
chemical component
|
| formula: |
C3 H7 N O2 S
|
| name: |
CYSTEINE
|
| roles: |
chemical component
|
| formula: |
C11 H12 N2 O2
|
| name: |
TRYPTOPHAN
|
| roles: |
chemical component
|
| formula: |
C10 H14 N5 O7 P
|
| name: |
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H14 N5 O6 P
|
| name: |
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H15 N2 O8 P
|
| name: |
THYMIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C9 H14 N3 O7 P
|
| name: |
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| name: |
X-RAY DIFFRACTION
|
| ID: |
pdb:1HJB
|
| ID: |
ndb:1HJB
|
| ID: |
pdbe:EBI-5785
|
| accessURL: | https://files.rcsb.org/download/1HJB.xml.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBML/XML
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/1HJB.pdb.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/1HJB.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBx/mmCIF
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=1HJB |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
FASTA
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/1HJB-sf.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
CIF
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
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|
| accessURL: | https://files.rcsb.org/download/1HJB.pdb1.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format (A)
|
| accessType: |
download
|
| authentication: |
none
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| authorization: |
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|
| accessURL: | http://www.rcsb.org/pdb/explore/jmol.do?structureId=1HJB&bionumber=1 |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
JSmol
|
| accessType: |
view
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| authentication: |
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| authorization: |
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|
| abbreviation: |
wwPDB
|
| homePage: | http://www.wwpdb.org |
| ID: |
SCR:006555
|
| name: |
Worldwide Protein Data Bank
|
| abbreviation: |
PDB
|
| homePage: | http://www.rcsb.org/pdb/ |
| ID: |
SCR:012820
|
| name: |
Protein Data Bank
|
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN BOUND TO A DNA FRAGME...
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN H...
Crystal structure of the complex comprised of ETS1 (V170A), RUNX1, CBFBETA,...
Crystal structure of the complex comprised of ETS1(G333P), RUNX1, CBFBETA, ...
crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from ...
Crystal structure of the complex comprised of ETS1(K167A), RUNX1, CBFBETA, ...