biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | Crystal structure of the third PDZ domain of human ligand-of-numb protein-X (LNX1) in complex with the C-terminal peptide from the coxsackievirus and adenovirus receptor
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| description: |
E3 ubiquitin-protein ligase LNX (E.C.6.3.2.-)
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| privacy: |
not applicable
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| aggregation: |
instance of dataset
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| ID: |
PDB:3B76
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| refinement: |
curated
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| keywords: |
LIGASE
PDZ
bound ligand
Structural Genomics
Structural Genomics Consortium
SGC
Ligase
Metal-binding
Ubl conjugation pathway
Zinc-finger
UNKNOWN FUNCTION
|
| creators: |
Ugochukwu, E.
Burgess-Brown, N.
Berridge, G.
Elkins, J.
Bunkoczi, G.
Pike, A.C.W.
Sundstrom, M.
Arrowsmith, C.H.
Weigelt, J.
Edwards, A.M.
Gileadi, O.
von Delft, F.
Doyle, D.
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| availability: |
available
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| types: |
structure
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| strain: |
BL21(DE3)-R3-Rosetta
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| name: |
Homo sapiens
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| ID: |
ncbitax:9606
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| name: |
Escherichia coli
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| ID: |
ncbitax:562
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| authors: |
Ugochukwu, E.
Burgess-Brown, N.
Berridge, G.
Elkins, J.
Bunkoczi, G.
Pike, A.C.W.
Sundstrom, M.
Arrowsmith, C.H.
Weigelt, J.
Edwards, A.M.
Gileadi, O.
von Delft, F.
Doyle, D.
|
| title: |
Crystal structure of the third PDZ domain of human ligand-of-numb protein-X (LNX1) in complex with the C-terminal peptide from the coxsackievirus and adenovirus receptor.
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| formula: |
C6 H13 N O2
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| name: |
LEUCINE
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| roles: |
chemical component
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| formula: |
C9 H11 N O3
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| name: |
TYROSINE
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| roles: |
chemical component
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| formula: |
C9 H11 N O2
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| name: |
PHENYLALANINE
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| roles: |
chemical component
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| formula: |
C5 H10 N2 O3
|
| name: |
GLUTAMINE
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| roles: |
chemical component
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| formula: |
C3 H7 N O3
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| name: |
SERINE
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| roles: |
chemical component
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| formula: |
C5 H11 N O2 S
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| name: |
METHIONINE
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| roles: |
chemical component
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| formula: |
C6 H10 N3 O2 1
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| name: |
HISTIDINE
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| roles: |
chemical component
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| formula: |
C5 H9 N O4
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| name: |
GLUTAMIC ACID
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| roles: |
chemical component
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| formula: |
C6 H15 N2 O2 1
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| name: |
LYSINE
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| roles: |
chemical component
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| formula: |
C5 H11 N O2
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| name: |
VALINE
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| roles: |
chemical component
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| formula: |
C4 H8 N2 O3
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| name: |
ASPARAGINE
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| roles: |
chemical component
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| formula: |
C6 H13 N O2
|
| name: |
ISOLEUCINE
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| roles: |
chemical component
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| formula: |
C4 H7 N O4
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| name: |
ASPARTIC ACID
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| roles: |
chemical component
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| formula: |
C5 H9 N O2
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| name: |
PROLINE
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| roles: |
chemical component
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| formula: |
C2 H5 N O2
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| name: |
GLYCINE
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| roles: |
chemical component
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| formula: |
C4 H9 N O3
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| name: |
THREONINE
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| roles: |
chemical component
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| formula: |
C3 H7 N O2
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| name: |
ALANINE
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| roles: |
chemical component
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| formula: |
C6 H15 N4 O2 1
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| name: |
ARGININE
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| roles: |
chemical component
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| formula: |
C11 H12 N2 O2
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| name: |
TRYPTOPHAN
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| roles: |
chemical component
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| formula: |
NA 1
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| name: |
SODIUM ION
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| roles: |
chemical component
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| formula: |
C2 H6 O2
|
| name: |
1,2-ETHANEDIOL
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| roles: |
chemical component
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| formula: |
H2 O
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| name: |
WATER
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| roles: |
chemical component
|
| name: |
LNX1, LNX
|
| name: |
X-RAY DIFFRACTION
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| ID: |
pdb:3B76
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| ID: |
rcsb:RCSB045163
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| accessURL: | https://files.rcsb.org/download/3B76.xml.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBML/XML
|
| accessType: |
download
|
| authentication: |
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| authorization: |
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|
| accessURL: | https://files.rcsb.org/download/3B76.pdb.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format
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| accessType: |
download
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| authentication: |
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| authorization: |
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| accessURL: | https://files.rcsb.org/download/3B76.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBx/mmCIF
|
| accessType: |
download
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| authentication: |
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| authorization: |
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| accessURL: | http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=3B76 |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
FASTA
|
| accessType: |
download
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| authentication: |
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| authorization: |
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| accessURL: | https://files.rcsb.org/download/3B76-sf.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
CIF
|
| accessType: |
download
|
| authentication: |
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| authorization: |
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|
| accessURL: | https://files.rcsb.org/download/3B76.pdb1.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format (A)
|
| accessType: |
download
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| authentication: |
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| authorization: |
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| accessURL: | http://www.rcsb.org/pdb/explore/jmol.do?structureId=3B76&bionumber=1 |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
JSmol
|
| accessType: |
view
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| authentication: |
none
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| authorization: |
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|
| abbreviation: |
wwPDB
|
| homePage: | http://www.wwpdb.org |
| ID: |
SCR:006555
|
| name: |
Worldwide Protein Data Bank
|
| abbreviation: |
PDB
|
| homePage: | http://www.rcsb.org/pdb/ |
| ID: |
SCR:012820
|
| name: |
Protein Data Bank
|
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