Mountain View
biomedical and healthCAre Data Discovery Index Ecosystem
help Advanced Search
Title: Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)      
description:
PROTEIN/RNA Complex
privacy:
not applicable
aggregation:
instance of dataset
ID:
PDB:4V6N
refinement:
curated
keywords:
RIBOSOME
cryoelectron microscopy
molecular dynamics flexible fitting
ratchet-like rotation
creators:
Agirrezabala, X.
Liao, H.Y.
Schreiner, E.
Fu, J.
Ortiz-Meoz, R.F.
Schulten, K.
Green, R.
Frank, J.
availability:
available
types:
structure
authors:
Agirrezabala, X.
Liao, H.Y.
Schreiner, E.
Fu, J.
Ortiz-Meoz, R.F.
Schulten, K.
Green, R.
Frank, J.
alternateID:
doi:10.1073/pnas.1201288109
year:
2012
ID: pmid:22467828
title:
Structural characterization of mRNA-tRNA translocation intermediates.
formula:
C11 H16 N5 O8 P
name:
1N-METHYLGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C11 H16 N5 O7 P
name:
2-METHYLADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C11 H16 N5 O8 P
name:
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O9 P
name:
(1S)-1,4-anhydro-1-(3-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol
roles:
chemical component
formula:
C11 H18 N3 O8 P
name:
4N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H13 N2 O8 P S
name:
4-THIOURIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H16 N3 O8 P
name:
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O9 P
name:
5-METHYLURIDINE 5'-MONOPHOSPHATE
roles:
chemical component
formula:
C11 H16 N5 O7 P
name:
N6-METHYLADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C11 H18 N5 O8 P
name:
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H14 N5 O7 P
name:
ADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C3 H7 N O2
name:
ALANINE
roles:
chemical component
formula:
C6 H15 N4 O2 1
name:
ARGININE
roles:
chemical component
formula:
C4 H8 N2 O3
name:
ASPARAGINE
roles:
chemical component
formula:
C4 H7 N O4
name:
ASPARTIC ACID
roles:
chemical component
formula:
C9 H14 N3 O8 P
name:
CYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H15 N3 O8 P 1
name:
N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C3 H7 N O2 S
name:
CYSTEINE
roles:
chemical component
formula:
C6 H11 N O3 S
name:
N-FORMYLMETHIONINE
roles:
chemical component
formula:
C10 H14 N5 O8 P
name:
GUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C5 H10 N2 O3
name:
GLUTAMINE
roles:
chemical component
formula:
C5 H9 N O4
name:
GLUTAMIC ACID
roles:
chemical component
formula:
C2 H5 N O2
name:
GLYCINE
roles:
chemical component
formula:
C9 H15 N2 O9 P
name:
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C6 H10 N3 O2 1
name:
HISTIDINE
roles:
chemical component
formula:
C6 H13 N O2
name:
ISOLEUCINE
roles:
chemical component
formula:
C6 H13 N O2
name:
LEUCINE
roles:
chemical component
formula:
C6 H15 N2 O2 1
name:
LYSINE
roles:
chemical component
formula:
C12 H18 N5 O7 P
name:
6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
roles:
chemical component
formula:
C5 H11 N O2 S
name:
METHIONINE
roles:
chemical component
formula:
C16 H26 N5 O7 P S
name:
2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H16 N3 O8 P
name:
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C11 H16 N5 O8 P
name:
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O9 P
name:
O2'-METHYLURIDINE 5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H11 N O2
name:
PHENYLALANINE
roles:
chemical component
formula:
C5 H9 N O2
name:
PROLINE
roles:
chemical component
formula:
C9 H13 N2 O9 P
name:
PSEUDOURIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C3 H7 N O3
name:
SERINE
roles:
chemical component
formula:
C4 H9 N O3
name:
THREONINE
roles:
chemical component
formula:
C11 H12 N2 O2
name:
TRYPTOPHAN
roles:
chemical component
formula:
C9 H11 N O3
name:
TYROSINE
roles:
chemical component
formula:
C9 H13 N2 O9 P
name:
URIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O9 P
name:
3-METHYLURIDINE-5'-MONOPHOSHATE
roles:
chemical component
formula:
C5 H11 N O2
name:
VALINE
roles:
chemical component
name:
ELECTRON MICROSCOPY
ID:
pdb:4V6N
accessURL: https://files.rcsb.org/download/4V6N.xml.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDBML/XML
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/4V6N.pdb.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDB Format
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/4V6N.cif.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDBx/mmCIF
accessType:
download
authentication:
none
authorization:
none
accessURL: http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=4V6N
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
FASTA
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/4V6N-sf.cif.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
CIF
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/4V6N.pdb1.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDB Format (A)
accessType:
download
authentication:
none
authorization:
none
accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=4V6N&bionumber=1
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
JSmol
accessType:
view
authentication:
none
authorization:
none
abbreviation:
wwPDB
homePage: http://www.wwpdb.org
ID:
SCR:006555
name:
Worldwide Protein Data Bank
abbreviation:
PDB
homePage: http://www.rcsb.org/pdb/
ID:
SCR:012820
name:
Protein Data Bank