biomedical and healthCAre Data Discovery Index Ecosystem
biomedical and healthCAre Data Discovery Index Ecosystem
| Title: | Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
|
| description: |
PROTEIN/RNA Complex
|
| privacy: |
not applicable
|
| aggregation: |
instance of dataset
|
| ID: |
PDB:4V6Q
|
| refinement: |
curated
|
| keywords: |
RIBOSOME
cryoelectron microscopy
molecular dynamics flexible fitting
ratchet-like rotation
|
| creators: |
Agirrezabala, X.
Liao, H.Y.
Schreiner, E.
Fu, J.
Ortiz-Meoz, R.F.
Schulten, K.
Green, R.
Frank, J.
|
| availability: |
available
|
| types: |
structure
|
| authors: |
Agirrezabala, X.
Liao, H.Y.
Schreiner, E.
Fu, J.
Ortiz-Meoz, R.F.
Schulten, K.
Green, R.
Frank, J.
|
| alternateID: |
doi:10.1073/pnas.1201288109
|
| year: |
2012
|
| ID: | pmid:22467828 |
| title: |
Structural characterization of mRNA-tRNA translocation intermediates.
|
| formula: |
C11 H16 N5 O8 P
|
| name: |
1N-METHYLGUANOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C11 H16 N5 O7 P
|
| name: |
2-METHYLADENOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C11 H16 N5 O8 P
|
| name: |
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H15 N2 O9 P
|
| name: |
(1S)-1,4-anhydro-1-(3-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol
|
| roles: |
chemical component
|
| formula: |
C11 H18 N3 O8 P
|
| name: |
4N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C9 H13 N2 O8 P S
|
| name: |
4-THIOURIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H16 N3 O8 P
|
| name: |
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H15 N2 O9 P
|
| name: |
5-METHYLURIDINE 5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C11 H16 N5 O7 P
|
| name: |
N6-METHYLADENOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C11 H18 N5 O8 P
|
| name: |
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H14 N5 O7 P
|
| name: |
ADENOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C3 H7 N O2
|
| name: |
ALANINE
|
| roles: |
chemical component
|
| formula: |
C6 H15 N4 O2 1
|
| name: |
ARGININE
|
| roles: |
chemical component
|
| formula: |
C4 H8 N2 O3
|
| name: |
ASPARAGINE
|
| roles: |
chemical component
|
| formula: |
C4 H7 N O4
|
| name: |
ASPARTIC ACID
|
| roles: |
chemical component
|
| formula: |
C9 H14 N3 O8 P
|
| name: |
CYTIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C9 H15 N3 O8 P 1
|
| name: |
N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C3 H7 N O2 S
|
| name: |
CYSTEINE
|
| roles: |
chemical component
|
| formula: |
C6 H11 N O3 S
|
| name: |
N-FORMYLMETHIONINE
|
| roles: |
chemical component
|
| formula: |
C10 H14 N5 O8 P
|
| name: |
GUANOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C5 H10 N2 O3
|
| name: |
GLUTAMINE
|
| roles: |
chemical component
|
| formula: |
C5 H9 N O4
|
| name: |
GLUTAMIC ACID
|
| roles: |
chemical component
|
| formula: |
C2 H5 N O2
|
| name: |
GLYCINE
|
| roles: |
chemical component
|
| formula: |
C9 H15 N2 O9 P
|
| name: |
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C6 H10 N3 O2 1
|
| name: |
HISTIDINE
|
| roles: |
chemical component
|
| formula: |
C6 H13 N O2
|
| name: |
ISOLEUCINE
|
| roles: |
chemical component
|
| formula: |
C6 H13 N O2
|
| name: |
LEUCINE
|
| roles: |
chemical component
|
| formula: |
C6 H15 N2 O2 1
|
| name: |
LYSINE
|
| roles: |
chemical component
|
| formula: |
C12 H18 N5 O7 P
|
| name: |
6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
|
| roles: |
chemical component
|
| formula: |
C5 H11 N O2 S
|
| name: |
METHIONINE
|
| roles: |
chemical component
|
| formula: |
C16 H26 N5 O7 P S
|
| name: |
2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H16 N3 O8 P
|
| name: |
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C11 H16 N5 O8 P
|
| name: |
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H15 N2 O9 P
|
| name: |
O2'-METHYLURIDINE 5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C9 H11 N O2
|
| name: |
PHENYLALANINE
|
| roles: |
chemical component
|
| formula: |
C5 H9 N O2
|
| name: |
PROLINE
|
| roles: |
chemical component
|
| formula: |
C9 H13 N2 O9 P
|
| name: |
PSEUDOURIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C3 H7 N O3
|
| name: |
SERINE
|
| roles: |
chemical component
|
| formula: |
C4 H9 N O3
|
| name: |
THREONINE
|
| roles: |
chemical component
|
| formula: |
C11 H12 N2 O2
|
| name: |
TRYPTOPHAN
|
| roles: |
chemical component
|
| formula: |
C9 H11 N O3
|
| name: |
TYROSINE
|
| roles: |
chemical component
|
| formula: |
C9 H13 N2 O9 P
|
| name: |
URIDINE-5'-MONOPHOSPHATE
|
| roles: |
chemical component
|
| formula: |
C10 H15 N2 O9 P
|
| name: |
3-METHYLURIDINE-5'-MONOPHOSHATE
|
| roles: |
chemical component
|
| formula: |
C5 H11 N O2
|
| name: |
VALINE
|
| roles: |
chemical component
|
| name: |
ELECTRON MICROSCOPY
|
| ID: |
pdb:4V6Q
|
| accessURL: | https://files.rcsb.org/download/4V6Q.xml.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBML/XML
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4V6Q.pdb.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4V6Q.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDBx/mmCIF
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=4V6Q |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
FASTA
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4V6Q-sf.cif.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
CIF
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | https://files.rcsb.org/download/4V6Q.pdb1.gz |
| storedIn: |
Protein Data Bank
|
| qualifier: |
gzip compressed
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
PDB Format (A)
|
| accessType: |
download
|
| authentication: |
none
|
| authorization: |
none
|
| accessURL: | http://www.rcsb.org/pdb/explore/jmol.do?structureId=4V6Q&bionumber=1 |
| storedIn: |
Protein Data Bank
|
| license: |
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
|
| format: |
JSmol
|
| accessType: |
view
|
| authentication: |
none
|
| authorization: |
none
|
| abbreviation: |
wwPDB
|
| homePage: | http://www.wwpdb.org |
| ID: |
SCR:006555
|
| name: |
Worldwide Protein Data Bank
|
| abbreviation: |
PDB
|
| homePage: | http://www.rcsb.org/pdb/ |
| ID: |
SCR:012820
|
| name: |
Protein Data Bank
|
Structural characterization of mRNA-tRNA translocation intermediates (class...
Structural characterization of mRNA-tRNA translocation intermediates (class...
Structural characterization of mRNA-tRNA translocation intermediates (class...
Structural characterization of mRNA-tRNA translocation intermediates (50S r...
Structural characterization of mRNA-tRNA translocation intermediates (class...
Structural insights into cognate vs. near-cognate discrimination during dec...