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Title: Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP      
description:
DNA polymerase I, thermostable (E.C.2.7.7.7)/DNA complex
privacy:
not applicable
aggregation:
instance of dataset
ID:
PDB:3T3F
refinement:
curated
keywords:
TRANSFERASE/DNA
DNA polymerase
Abasic site
Translesion synthesis
A-rule
base stacking
dNITP
Nitroindol triphosphate
base analogue
TRANSFERASE-DNA complex
creators:
Obeid, S.
Welte, W.
Diederichs, K.
Marx, A.
availability:
available
types:
structure
strain:
BL21 DE3
name:
Thermus aquaticus
ID:
ncbitax:271
name:
Escherichia coli
ID:
ncbitax:562
authors:
Obeid, S.
Welte, W.
Diederichs, K.
Marx, A.
alternateID:
doi:10.1074/jbc.M111.334904
year:
2012
ID: pmid:22318723
title:
Amino acid templating mechanisms in selection of nucleotides opposite abasic sites by a family a DNA polymerase.
formula:
C3 H7 N O2
name:
ALANINE
roles:
chemical component
formula:
C6 H13 N O2
name:
LEUCINE
roles:
chemical component
formula:
C5 H9 N O4
name:
GLUTAMIC ACID
roles:
chemical component
formula:
C5 H9 N O2
name:
PROLINE
roles:
chemical component
formula:
C11 H12 N2 O2
name:
TRYPTOPHAN
roles:
chemical component
formula:
C2 H5 N O2
name:
GLYCINE
roles:
chemical component
formula:
C9 H11 N O2
name:
PHENYLALANINE
roles:
chemical component
formula:
C5 H11 N O2
name:
VALINE
roles:
chemical component
formula:
C3 H7 N O3
name:
SERINE
roles:
chemical component
formula:
C6 H15 N4 O2 1
name:
ARGININE
roles:
chemical component
formula:
C6 H15 N2 O2 1
name:
LYSINE
roles:
chemical component
formula:
C5 H11 N O2 S
name:
METHIONINE
roles:
chemical component
formula:
C4 H7 N O4
name:
ASPARTIC ACID
roles:
chemical component
formula:
C6 H10 N3 O2 1
name:
HISTIDINE
roles:
chemical component
formula:
C9 H11 N O3
name:
TYROSINE
roles:
chemical component
formula:
C4 H8 N2 O3
name:
ASPARAGINE
roles:
chemical component
formula:
C4 H9 N O3
name:
THREONINE
roles:
chemical component
formula:
C6 H13 N O2
name:
ISOLEUCINE
roles:
chemical component
formula:
C5 H10 N2 O3
name:
GLUTAMINE
roles:
chemical component
formula:
C10 H14 N5 O7 P
name:
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H14 N5 O6 P
name:
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H14 N3 O7 P
name:
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H14 N3 O6 P
name:
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C5 H11 O6 P
name:
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O8 P
name:
THYMIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C3 H8 O3
name:
GLYCEROL
roles:
chemical component
formula:
MG 2
name:
MAGNESIUM ION
roles:
chemical component
formula:
NA 1
name:
SODIUM ION
roles:
chemical component
formula:
C13 H17 N2 O14 P3
name:
1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE
roles:
chemical component
formula:
C H2 O2
name:
FORMIC ACID
roles:
chemical component
formula:
H2 O
name:
WATER
roles:
chemical component
name:
pol I, pol1, polA
name:
X-RAY DIFFRACTION
ID:
pdb:3T3F
ID:
ndb:NA1235
ID:
rcsb:RCSB066987
accessURL: https://files.rcsb.org/download/3T3F.xml.gz
storedIn:
Protein Data Bank
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Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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accessURL: https://files.rcsb.org/download/3T3F.cif.gz
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Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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storedIn:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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storedIn:
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Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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storedIn:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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storedIn:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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abbreviation:
wwPDB
homePage: http://www.wwpdb.org
ID:
SCR:006555
name:
Worldwide Protein Data Bank
abbreviation:
PDB
homePage: http://www.rcsb.org/pdb/
ID:
SCR:012820
name:
Protein Data Bank