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Title: Crystal structure of R-6'-Me-3'-fluoro hexitol nucleic acid      
dateReleased:
02-08-2012
creators:
Pallan, P.S.
Yu, J.
Allerson, C.R.
Swayze, E.E.
Seth, P.
Egli, M.
description:
5'-D(*GP*CP*GP*TP*AP*(F6H)P*AP*CP*GP*C)-3'
privacy:
not applicable
aggregation:
instance of dataset
ID:
PDB:3V07
refinement:
curated
keywords:
DNA
A-form DNA
3'-fluoro hexitol nucleic acid
FHNA
R-6'-Me-FHNA
antisense oligonucleotides
dateCreated:
12-07-2011
availability:
available
types:
structure
authors:
Pallan, P.S.
Yu, J.
Allerson, C.R.
Swayze, E.E.
Seth, P.
Egli, M.
alternateID:
doi:10.1021/bi201810r
year:
2012
ID: pmid:22229409
title:
Insights from crystal structures into the opposite effects on RNA affinity caused by the s- and R-6'-methyl backbone modifications of 3'-fluoro hexitol nucleic Acid.
formula:
C10 H14 N5 O7 P
name:
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H14 N3 O7 P
name:
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O8 P
name:
THYMIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H14 N5 O6 P
name:
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C12 H18 F N2 O8 P
name:
3,7-ANHYDRO-1,5,6-TRIDEOXY-5-FLUORO-6-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-2-O-PHOSPHONO-D-GLYCERO-L-ALLO-HEPTITOL
roles:
chemical component
formula:
H2 O
name:
WATER
roles:
chemical component
name:
X-RAY DIFFRACTION
ID:
pdb:3V07
ID:
ndb:NA1503
ID:
rcsb:RCSB069429
accessURL: https://files.rcsb.org/download/3V07.xml.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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accessURL: https://files.rcsb.org/download/3V07.pdb.gz
storedIn:
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qualifier:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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accessURL: https://files.rcsb.org/download/3V07.cif.gz
storedIn:
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qualifier:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
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accessURL: https://files.rcsb.org/download/3V07-sf.cif.gz
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessURL: https://files.rcsb.org/download/3V07.pdb1.gz
storedIn:
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qualifier:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=3V07&bionumber=1
storedIn:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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abbreviation:
wwPDB
homePage: http://www.wwpdb.org
ID:
SCR:006555
name:
Worldwide Protein Data Bank
abbreviation:
PDB
homePage: http://www.rcsb.org/pdb/
ID:
SCR:012820
name:
Protein Data Bank