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Title: Structure of the bromodomain of human ATPase family AAA domain-containing protein 2 (ATAD2) complexed with Histone H4-K(ac)12      
description:
ATPase family AAA domain-containing protein 2 (E.C.3.6.1.3), Histone H4
privacy:
not applicable
aggregation:
instance of dataset
ID:
PDB:4QUT
refinement:
curated
keywords:
SIGNALING PROTEIN
Structural Genomics
Structural Genomics Consortium
SGC
bromodomain
actyl-lysine binding
ATPase family AAA domain-containing protein 2
epigenetics
histone
bromodomain-histone
Structural Genomics Consortium (SGC)
creators:
Morozumi, Y.
Boussouar, F.
Tan, M.
Chaikuad, A.
Jamshidikia, M.
Colak, G.
He, H.
Nie, L.
Petosa, C.
de Dieuleveult, M.
Curtet, S.
Vitte, A.L.
Rabatel, C.
Debernardi, A.
Cosset, F.L.
Verhoeyen, E.
Emadali, A.
Schweifer, N.
Gianni, D.
Gut, M.
Guardiola, P.
Rousseaux, S.
Gerard, M.
Knapp, S.
Zhao, Y.
Khochbin, S.
availability:
available
types:
structure
strain:
BL21-R3-pRARE2
name:
Homo sapiens
ID:
ncbitax:9606
name:
Escherichia coli
ID:
ncbitax:562
authors:
Morozumi, Y.
Boussouar, F.
Tan, M.
Chaikuad, A.
Jamshidikia, M.
Colak, G.
He, H.
Nie, L.
Petosa, C.
de Dieuleveult, M.
Curtet, S.
Vitte, A.L.
Rabatel, C.
Debernardi, A.
Cosset, F.L.
Verhoeyen, E.
Emadali, A.
Schweifer, N.
Gianni, D.
Gut, M.
Guardiola, P.
Rousseaux, S.
Gerard, M.
Knapp, S.
Zhao, Y.
Khochbin, S.
alternateID:
doi:10.1093/jmcb/mjv060
year:
2015
ID: pmid:26459632
title:
Atad2 is a generalist facilitator of chromatin dynamics in embryonic stem cells.
formula:
C3 H7 N O3
name:
SERINE
roles:
chemical component
formula:
C5 H11 N O2 S
name:
METHIONINE
roles:
chemical component
formula:
C5 H10 N2 O3
name:
GLUTAMINE
roles:
chemical component
formula:
C5 H9 N O4
name:
GLUTAMIC ACID
roles:
chemical component
formula:
C4 H7 N O4
name:
ASPARTIC ACID
roles:
chemical component
formula:
C4 H9 N O3
name:
THREONINE
roles:
chemical component
formula:
C9 H11 N O2
name:
PHENYLALANINE
roles:
chemical component
formula:
C6 H15 N4 O2 1
name:
ARGININE
roles:
chemical component
formula:
C6 H13 N O2
name:
LEUCINE
roles:
chemical component
formula:
C6 H13 N O2
name:
ISOLEUCINE
roles:
chemical component
formula:
C4 H8 N2 O3
name:
ASPARAGINE
roles:
chemical component
formula:
C5 H11 N O2
name:
VALINE
roles:
chemical component
formula:
C6 H10 N3 O2 1
name:
HISTIDINE
roles:
chemical component
formula:
C3 H7 N O2
name:
ALANINE
roles:
chemical component
formula:
C6 H15 N2 O2 1
name:
LYSINE
roles:
chemical component
formula:
C5 H9 N O2
name:
PROLINE
roles:
chemical component
formula:
C9 H11 N O3
name:
TYROSINE
roles:
chemical component
formula:
C3 H7 N O2 S
name:
CYSTEINE
roles:
chemical component
formula:
C2 H5 N O2
name:
GLYCINE
roles:
chemical component
formula:
C8 H16 N2 O3
name:
N(6)-ACETYLLYSINE
roles:
chemical component
formula:
O4 S -2
name:
SULFATE ION
roles:
chemical component
formula:
C2 H6 O2
name:
1,2-ETHANEDIOL
roles:
chemical component
formula:
H2 O
name:
WATER
roles:
chemical component
name:
ATAD2, L16, PRO2000
name:
X-RAY DIFFRACTION
ID:
pdb:4QUT
ID:
rcsb:RCSB086540
accessURL: https://files.rcsb.org/download/4QUT.xml.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/4QUT.pdb.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDB Format
accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/4QUT.cif.gz
storedIn:
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qualifier:
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license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDBx/mmCIF
accessType:
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authentication:
none
authorization:
none
accessURL: http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=4QUT
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
FASTA
accessType:
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authentication:
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authorization:
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accessURL: https://files.rcsb.org/download/4QUT-sf.cif.gz
storedIn:
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qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
CIF
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/4QUT.pdb1.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
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accessType:
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authentication:
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authorization:
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accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=4QUT&bionumber=1
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
JSmol
accessType:
view
authentication:
none
authorization:
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abbreviation:
wwPDB
homePage: http://www.wwpdb.org
ID:
SCR:006555
name:
Worldwide Protein Data Bank
abbreviation:
PDB
homePage: http://www.rcsb.org/pdb/
ID:
SCR:012820
name:
Protein Data Bank