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Title: The mouse nucleosome structure containing H3.1      
dateReleased:
02-15-2017
creators:
Ueda, J.
Harada, A.
Urahama, T.
Machida, S.
Maehara, K.
Hada, M.
Makino, Y.
Nogami, J.
Horikoshi, N.
Osakabe, A.
Taguchi, H.
Tanaka, H.
Tachiwana, H.
Yao, T.
Yamada, M.
Iwamoto, T.
Isotani, A.
Ikawa, M.
Tachibana, T.
Okada, Y.
Kimura, H.
Ohkawa, Y.
Kurumizaka, H.
Yamagata, K.
description:
Histone H3.1, Histone H4, Histone H2A type 1, Histone H2B type 3-A/DNA Complex
privacy:
not applicable
aggregation:
instance of dataset
ID:
PDB:5B1M
refinement:
curated
keywords:
STRUCTURAL PROTEIN/DNA
chromatin
DNA binding
histone-fold
STRUCTURAL PROTEIN-DNA complex
dateCreated:
12-08-2015
availability:
available
types:
structure
strain:
BL21(DE3)
name:
Mus musculus
ID:
ncbitax:10090
strain:
JM109(DE3)
name:
Mus musculus
ID:
ncbitax:10090
strain:
BL21(DE3)
name:
Mus musculus
ID:
ncbitax:10090
strain:
BL21(DE3)
name:
Mus musculus
ID:
ncbitax:10090
strain:
DH5[alpha]
name:
Homo sapiens
ID:
ncbitax:9606
name:
Escherichia coli BL21(DE3)
ID:
ncbitax:469008
name:
Escherichia coli
ID:
ncbitax:562
name:
Escherichia coli BL21(DE3)
ID:
ncbitax:469008
name:
Escherichia coli BL21(DE3)
ID:
ncbitax:469008
name:
Escherichia coli DH5[alpha]
ID:
ncbitax:668369
authors:
Ueda, J.
Harada, A.
Urahama, T.
Machida, S.
Maehara, K.
Hada, M.
Makino, Y.
Nogami, J.
Horikoshi, N.
Osakabe, A.
Taguchi, H.
Tanaka, H.
Tachiwana, H.
Yao, T.
Yamada, M.
Iwamoto, T.
Isotani, A.
Ikawa, M.
Tachibana, T.
Okada, Y.
Kimura, H.
Ohkawa, Y.
Kurumizaka, H.
Yamagata, K.
alternateID:
doi:10.1016/j.celrep.2016.12.065
year:
2017
ID: pmid:28099840
title:
Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis
formula:
C3 H7 N O2
name:
ALANINE
roles:
chemical component
formula:
C6 H15 N4 O2 1
name:
ARGININE
roles:
chemical component
formula:
C4 H8 N2 O3
name:
ASPARAGINE
roles:
chemical component
formula:
C4 H7 N O4
name:
ASPARTIC ACID
roles:
chemical component
formula:
C3 H7 N O2 S
name:
CYSTEINE
roles:
chemical component
formula:
C10 H14 N5 O6 P
name:
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C9 H14 N3 O7 P
name:
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H14 N5 O7 P
name:
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C10 H15 N2 O8 P
name:
THYMIDINE-5'-MONOPHOSPHATE
roles:
chemical component
formula:
C5 H10 N2 O3
name:
GLUTAMINE
roles:
chemical component
formula:
C5 H9 N O4
name:
GLUTAMIC ACID
roles:
chemical component
formula:
C2 H5 N O2
name:
GLYCINE
roles:
chemical component
formula:
C6 H10 N3 O2 1
name:
HISTIDINE
roles:
chemical component
formula:
H2 O
name:
WATER
roles:
chemical component
formula:
C6 H13 N O2
name:
ISOLEUCINE
roles:
chemical component
formula:
C6 H13 N O2
name:
LEUCINE
roles:
chemical component
formula:
C6 H15 N2 O2 1
name:
LYSINE
roles:
chemical component
formula:
C5 H11 N O2 S
name:
METHIONINE
roles:
chemical component
formula:
C9 H11 N O2
name:
PHENYLALANINE
roles:
chemical component
formula:
C5 H9 N O2
name:
PROLINE
roles:
chemical component
formula:
C3 H7 N O3
name:
SERINE
roles:
chemical component
formula:
C4 H9 N O3
name:
THREONINE
roles:
chemical component
formula:
C9 H11 N O3
name:
TYROSINE
roles:
chemical component
formula:
C5 H11 N O2
name:
VALINE
roles:
chemical component
name:
Hist1h3a, H3a, Hist1h3g, H3.1-221, H3g, Hist1h3h, H3.1-291, H3h, Hist1h3i, H3.1-I, H3i
name:
Hist1h4a, Hist1h4b, H4-53, Hist1h4c, H4-12, Hist1h4d, Hist1h4f, Hist1h4h, Hist1h4i, Hist1h4j, Hist1h4k, Hist1h4m, Hist2h4a, Hist2h4, Hist4h4
name:
Hist1h2ab, Hist1h2ac, Hist1h2ad, Hist1h2ae, Hist1h2ag, Hist1h2ai, Hist1h2an, Hist1h2ao
name:
Hist3h2ba
name:
X-RAY DIFFRACTION
ID:
pdb:5B1M
ID:
wwpdb:D_1300000367
accessURL: https://files.rcsb.org/download/5B1M.xml.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDBML/XML
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/5B1M.pdb.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDB Format
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/5B1M.cif.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDBx/mmCIF
accessType:
download
authentication:
none
authorization:
none
accessURL: http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=5B1M
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
FASTA
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/5B1M-sf.cif.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
CIF
accessType:
download
authentication:
none
authorization:
none
accessURL: https://files.rcsb.org/download/5B1M.pdb1.gz
storedIn:
Protein Data Bank
qualifier:
gzip compressed
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
PDB Format (A)
accessType:
download
authentication:
none
authorization:
none
accessURL: http://www.rcsb.org/pdb/explore/jmol.do?structureId=5B1M&bionumber=1
storedIn:
Protein Data Bank
license:
Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice.
format:
JSmol
accessType:
view
authentication:
none
authorization:
none
abbreviation:
wwPDB
homePage: http://www.wwpdb.org
ID:
SCR:006555
name:
Worldwide Protein Data Bank
abbreviation:
PDB
homePage: http://www.rcsb.org/pdb/
ID:
SCR:012820
name:
Protein Data Bank